disease resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 1 - 42 | 1.2e-08 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 69 - 134 | 2.4e-14 | GAG-pre-integrase domain |
| rve | PF00665 | 154 - 247 | 2e-11 | Integrase core domain |
| SH3_retrovirus | PF25597 | 324 - 385 | 1.1e-21 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 530 - 653 | 1.6e-41 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1071 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 409 |
| Acc36I | ACCTGC | 1 cut(s) | 1532 |
| AccI | GTMKAC | 1 cut(s) | 177 |
| AclI | AACGTT | 1 cut(s) | 60 |
| AclWI | GGATC | 2 cut(s) | 29, 1493 |
| AcsI | RAATTY | 3 cut(s) | 371, 1357, 1588 |
| AcuI | CTGAAG | 3 cut(s) | 636, 852, 1584 |
| AcyI | GRCGYC | 1 cut(s) | 1518 |
| AfaI | GTAC | 4 cut(s) | 106, 256, 453, 1983 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 114, 957, 1349 |
| AflII | CTTAAG | 1 cut(s) | 955 |
| AflIII | ACRYGT | 1 cut(s) | 207 |
| AgeI | ACCGGT | 1 cut(s) | 937 |
| AgsI | TTSAA | 7 cut(s) | 418, 601, 907, 1031, 1390, 1782, 1910 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 173 |
| AjnI | CCWGG | 1 cut(s) | 73 |
| Alw21I | GWGCWC | 2 cut(s) | 153, 1480 |
| Alw26I | GTCTC | 2 cut(s) | 1029, 1107 |
| AlwI | GGATC | 2 cut(s) | 29, 1493 |
| AoxI | GGCC | 1 cut(s) | 482 |
| ApeKI | GCWGC | 7 cut(s) | 245, 362, 426, 429, 1638, 1805, 1891 |
| ApoI | RAATTY | 3 cut(s) | 371, 1357, 1588 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1106, 1138 |
| AseI | ATTAAT | 1 cut(s) | 900 |
| AsiGI | ACCGGT | 1 cut(s) | 937 |
| AspS9I | GGNCC | 2 cut(s) | 482, 1864 |
| AsuHPI | GGTGA | 5 cut(s) | 583, 683, 876, 1114, 1960 |
| AsuII | TTCGAA | 1 cut(s) | 1452 |
| AvaII | GGWCC | 1 cut(s) | 1864 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1973, 2006 |
| BanII | GRGCYC | 1 cut(s) | 1960 |
| BbsI | GAAGAC | 6 cut(s) | 270, 578, 749, 1521, 1850, 1881 |
| Bbv12I | GWGCWC | 2 cut(s) | 153, 1480 |
| BbvI | GCAGC | 7 cut(s) | 257, 374, 438, 441, 1625, 1817, 1903 |
| BccI | CCATC | 7 cut(s) | 29, 341, 493, 1171, 1231, 1564, 1828 |
| BciT130I | CCWGG | 1 cut(s) | 75 |
| BclI | TGATCA | 1 cut(s) | 1104 |
| BcoDI | GTCTC | 2 cut(s) | 1029, 1107 |
| BfaI | CTAG | 1 cut(s) | 891 |
| BfrI | CTTAAG | 1 cut(s) | 955 |
| BfuAI | ACCTGC | 1 cut(s) | 1532 |
| BisI | GCNGC | 7 cut(s) | 246, 363, 427, 430, 1639, 1806, 1892 |
| BlsI | GCNGC | 7 cut(s) | 247, 364, 428, 431, 1640, 1807, 1893 |
| BmcAI | AGTACT | 1 cut(s) | 453 |
| Bme1390I | CCNGG | 1 cut(s) | 75 |
| Bme18I | GGWCC | 1 cut(s) | 1864 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 173 |
| BmgT120I | GGNCC | 2 cut(s) | 482, 1864 |
| BmiI | GGNNCC | 6 cut(s) | 483, 511, 1017, 1293, 1608, 1865 |
| BmrFI | CCNGG | 1 cut(s) | 75 |
| BmsI | GCATC | 3 cut(s) | 726, 1309, 1672 |
| BpiI | GAAGAC | 6 cut(s) | 270, 578, 749, 1521, 1850, 1881 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1462, 1494, 1742, 1774 |
| BpmI | CTGGAG | 1 cut(s) | 1746 |
| Bpu10I | CCTNAGC | 3 cut(s) | 293, 1245, 1326 |
| Bpu14I | TTCGAA | 1 cut(s) | 1452 |
| BpuEI | CTTGAG | 4 cut(s) | 529, 1400, 1944, 1960 |
| BsaHI | GRCGYC | 1 cut(s) | 1518 |
| BsaJI | CCNNGG | 3 cut(s) | 73, 108, 1971 |
| BsaWI | WCCGGW | 2 cut(s) | 937, 1456 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 911, 941 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 114, 957, 1349 |
| Bse118I | RCCGGY | 1 cut(s) | 937 |
| Bse1I | ACTGG | 2 cut(s) | 459, 1763 |
| BseBI | CCWGG | 1 cut(s) | 75 |
| BseDI | CCNNGG | 3 cut(s) | 73, 108, 1971 |
| BseGI | GGATG | 2 cut(s) | 780, 1843 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 114, 957, 1349 |
| BseMII | CTCAG | 5 cut(s) | 264, 1259, 1340, 1472, 1823 |
| BseNI | ACTGG | 2 cut(s) | 459, 1763 |
| BseRI | GAGGAG | 1 cut(s) | 932 |
| BseXI | GCAGC | 7 cut(s) | 257, 374, 438, 441, 1625, 1817, 1903 |
| BseYI | CCCAGC | 1 cut(s) | 52 |
| BsgI | GTGCAG | 3 cut(s) | 381, 933, 1560 |
| BshFI | GGCC | 1 cut(s) | 484 |
| BshTI | ACCGGT | 1 cut(s) | 937 |
| BsiHKAI | GWGCWC | 2 cut(s) | 153, 1480 |
| BsiSI | CCGG | 2 cut(s) | 938, 1457 |
| BslFI | GGGAC | 2 cut(s) | 180, 1877 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 114, 957, 1349 |
| BsmAI | GTCTC | 2 cut(s) | 1029, 1107 |
| BsmBI | CGTCTC | 1 cut(s) | 1107 |
| BsmFI | GGGAC | 2 cut(s) | 180, 1877 |
| BsmI | GAATGC | 2 cut(s) | 33, 1037 |
| BsnI | GGCC | 1 cut(s) | 484 |
| Bsp119I | TTCGAA | 1 cut(s) | 1452 |
| Bsp1286I | GDGCHC | 3 cut(s) | 153, 1480, 1960 |
| Bsp143I | GATC | 4 cut(s) | 21, 881, 1104, 1498 |
| Bsp19I | CCATGG | 1 cut(s) | 108 |
| BspANI | GGCC | 1 cut(s) | 484 |
| BspCNI | CTCAG | 5 cut(s) | 265, 1258, 1339, 1473, 1822 |
| BspLI | GGNNCC | 6 cut(s) | 483, 511, 1017, 1293, 1608, 1865 |
| BspMI | ACCTGC | 1 cut(s) | 1532 |
| BspPI | GGATC | 2 cut(s) | 29, 1493 |
| BspT104I | TTCGAA | 1 cut(s) | 1452 |
| BspTI | CTTAAG | 1 cut(s) | 955 |
| BsrFI | RCCGGY | 1 cut(s) | 937 |
| BsrI | ACTGG | 2 cut(s) | 459, 1763 |
| BssAI | RCCGGY | 1 cut(s) | 937 |
| BssECI | CCNNGG | 3 cut(s) | 73, 108, 1971 |
| BssMI | GATC | 4 cut(s) | 21, 881, 1104, 1498 |
| BssNI | GRCGYC | 1 cut(s) | 1518 |
| BssT1I | CCWWGG | 2 cut(s) | 108, 1971 |
| Bst2UI | CCWGG | 1 cut(s) | 75 |
| Bst4CI | ACNGT | 5 cut(s) | 16, 342, 736, 761, 1318 |
| Bst6I | CTCTTC | 3 cut(s) | 179, 828, 1560 |
| BstACI | GRCGYC | 1 cut(s) | 1518 |
| BstAFI | CTTAAG | 1 cut(s) | 955 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 384 |
| BstBI | TTCGAA | 1 cut(s) | 1452 |
| BstDEI | CTNAG | 7 cut(s) | 273, 293, 1020, 1245, 1326, 1481, 1809 |
| BstDSI | CCRYGG | 1 cut(s) | 108 |
| BstF5I | GGATG | 2 cut(s) | 780, 1843 |
| BstKTI | GATC | 4 cut(s) | 24, 884, 1107, 1501 |
| BstMAI | GTCTC | 2 cut(s) | 1029, 1107 |
| BstMBI | GATC | 4 cut(s) | 21, 881, 1104, 1498 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 289, 384, 851, 860, 1261 |
| BstNI | CCWGG | 1 cut(s) | 75 |
| BstNSI | RCATGY | 3 cut(s) | 211, 867, 2006 |
| BstSCI | CCNGG | 1 cut(s) | 73 |
| BstV1I | GCAGC | 7 cut(s) | 257, 374, 438, 441, 1625, 1817, 1903 |
| BstV2I | GAAGAC | 6 cut(s) | 270, 578, 749, 1521, 1850, 1881 |
| BstX2I | RGATCY | 1 cut(s) | 1498 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1978 |
| BstYI | RGATCY | 1 cut(s) | 1498 |
| BsuRI | GGCC | 1 cut(s) | 484 |
| BtgI | CCRYGG | 1 cut(s) | 108 |
| BtsCI | GGATG | 2 cut(s) | 780, 1843 |
| BtsI | GCAGTG | 2 cut(s) | 979, 1983 |
| BtsIMutI | CAGTG | 2 cut(s) | 979, 1983 |
| BveI | ACCTGC | 1 cut(s) | 1532 |
| Cfr10I | RCCGGY | 1 cut(s) | 937 |
| Cfr13I | GGNCC | 2 cut(s) | 482, 1864 |
| CseI | GACGC | 1 cut(s) | 1526 |
| Csp6I | GTAC | 4 cut(s) | 105, 255, 452, 1982 |
| CspAI | ACCGGT | 1 cut(s) | 937 |
| CviQI | GTAC | 4 cut(s) | 105, 255, 452, 1982 |
| DdeI | CTNAG | 7 cut(s) | 273, 293, 1020, 1245, 1326, 1481, 1809 |
| DpnI | GATC | 4 cut(s) | 23, 883, 1106, 1500 |
| DpnII | GATC | 4 cut(s) | 21, 881, 1104, 1498 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 409 |
| DriI | GACNNNNNGTC | 1 cut(s) | 173 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 409 |
| Eam1104I | CTCTTC | 3 cut(s) | 179, 828, 1560 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 173 |
| EarI | CTCTTC | 3 cut(s) | 179, 828, 1560 |
| Eco130I | CCWWGG | 2 cut(s) | 108, 1971 |
| Eco24I | GRGCYC | 1 cut(s) | 1960 |
| Eco47I | GGWCC | 1 cut(s) | 1864 |
| Eco57I | CTGAAG | 3 cut(s) | 636, 852, 1584 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1864 |
| EcoRI | GAATTC | 2 cut(s) | 1357, 1588 |
| EcoRII | CCWGG | 1 cut(s) | 73 |
| EcoT14I | CCWWGG | 2 cut(s) | 108, 1971 |
| EcoT22I | ATGCAT | 3 cut(s) | 33, 865, 985 |
| EcoT38I | GRGCYC | 1 cut(s) | 1960 |
| ErhI | CCWWGG | 2 cut(s) | 108, 1971 |
| Esp3I | CGTCTC | 1 cut(s) | 1107 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 677, 709 |
| FaqI | GGGAC | 2 cut(s) | 180, 1877 |
| FauNDI | CATATG | 1 cut(s) | 1510 |
| FbaI | TGATCA | 1 cut(s) | 1104 |
| FblI | GTMKAC | 1 cut(s) | 177 |
| Fnu4HI | GCNGC | 7 cut(s) | 246, 363, 427, 430, 1639, 1806, 1892 |
| FokI | GGATG | 2 cut(s) | 787, 1850 |
| FriOI | GRGCYC | 1 cut(s) | 1960 |
| Fsp4HI | GCNGC | 7 cut(s) | 246, 363, 427, 430, 1639, 1806, 1892 |
| FspBI | CTAG | 1 cut(s) | 891 |
| GluI | GCNGC | 7 cut(s) | 246, 363, 427, 430, 1639, 1806, 1892 |
| GsaI | CCCAGC | 1 cut(s) | 56 |
| GsuI | CTGGAG | 1 cut(s) | 1746 |
| HaeIII | GGCC | 1 cut(s) | 484 |
| HapII | CCGG | 2 cut(s) | 938, 1457 |
| HgaI | GACGC | 1 cut(s) | 1526 |
| Hin1I | GRCGYC | 1 cut(s) | 1518 |
| HinfI | GANTC | 9 cut(s) | 6, 304, 1235, 1382, 1423, 1449, 1471, 1574, 1924 |
| HpaII | CCGG | 2 cut(s) | 938, 1457 |
| HphI | GGTGA | 5 cut(s) | 583, 683, 876, 1114, 1960 |
| Hpy166II | GTNNAC | 1 cut(s) | 178 |
| Hpy188I | TCNGA | 9 cut(s) | 11, 26, 47, 93, 141, 630, 1240, 1482, 1787 |
| Hpy188III | TCNNGA | 4 cut(s) | 556, 930, 1028, 1051 |
| Hpy8I | GTNNAC | 1 cut(s) | 178 |
| HpyAV | CCTTC | 9 cut(s) | 230, 282, 538, 544, 707, 897, 1162, 1184, 1727 |
| HpyCH4III | ACNGT | 5 cut(s) | 16, 342, 736, 761, 1318 |
| HpyCH4IV | ACGT | 3 cut(s) | 60, 1116, 1702 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 289, 384, 851, 860, 1261 |
| HpyF3I | CTNAG | 7 cut(s) | 273, 293, 1020, 1245, 1326, 1481, 1809 |
| HpySE526I | ACGT | 3 cut(s) | 60, 1116, 1702 |
| Hsp92I | GRCGYC | 1 cut(s) | 1518 |
| Ksp22I | TGATCA | 1 cut(s) | 1104 |
| Kzo9I | GATC | 4 cut(s) | 21, 881, 1104, 1498 |
| LmnI | GCTCC | 7 cut(s) | 242, 509, 657, 804, 1252, 1333, 1600 |
| Lsp1109I | GCAGC | 7 cut(s) | 257, 374, 438, 441, 1625, 1817, 1903 |
| LweI | GCATC | 3 cut(s) | 726, 1309, 1672 |
| MaeI | CTAG | 1 cut(s) | 891 |
| MaeII | ACGT | 3 cut(s) | 60, 1116, 1702 |
| MalI | GATC | 4 cut(s) | 23, 883, 1106, 1500 |
| MboI | GATC | 4 cut(s) | 21, 881, 1104, 1498 |
| MflI | RGATCY | 1 cut(s) | 1498 |
| MhlI | GDGCHC | 3 cut(s) | 153, 1480, 1960 |
| MluCI | AATT | 9 cut(s) | 249, 323, 371, 418, 901, 1257, 1357, 1434, 1588 |
| MlyI | GAGTC | 3 cut(s) | 313, 1391, 1480 |
| MmeI | TCCRAC | 4 cut(s) | 100, 975, 1526, 1526 |
| Mph1103I | ATGCAT | 3 cut(s) | 33, 865, 985 |
| MseI | TTAA | 7 cut(s) | 101, 653, 738, 876, 900, 956, 1145 |
| MslI | CAYNNNNRTG | 5 cut(s) | 333, 471, 1677, 1883, 2001 |
| MspA1I | CMGCKG | 1 cut(s) | 700 |
| MspCI | CTTAAG | 1 cut(s) | 955 |
| MspI | CCGG | 2 cut(s) | 938, 1457 |
| MspR9I | CCNGG | 1 cut(s) | 75 |
| Mva1269I | GAATGC | 2 cut(s) | 33, 1037 |
| MvaI | CCWGG | 1 cut(s) | 75 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 289, 384, 851, 860, 1261 |
| NcoI | CCATGG | 1 cut(s) | 108 |
| NdeI | CATATG | 1 cut(s) | 1510 |
| NdeII | GATC | 4 cut(s) | 21, 881, 1104, 1498 |
| NlaIV | GGNNCC | 6 cut(s) | 483, 511, 1017, 1293, 1608, 1865 |
| NsiI | ATGCAT | 3 cut(s) | 33, 865, 985 |
| NspI | RCATGY | 3 cut(s) | 211, 867, 2006 |
| NspV | TTCGAA | 1 cut(s) | 1452 |
| PciI | ACATGT | 1 cut(s) | 207 |
| PctI | GAATGC | 2 cut(s) | 33, 1037 |
| PfeI | GAWTC | 6 cut(s) | 6, 1235, 1423, 1449, 1574, 1924 |
| PflFI | GACNNNGTC | 1 cut(s) | 1118 |
| PinAI | ACCGGT | 1 cut(s) | 937 |
| PkrI | GCNGC | 7 cut(s) | 247, 364, 428, 431, 1640, 1807, 1893 |
| PleI | GAGTC | 3 cut(s) | 312, 1390, 1479 |
| PpsI | GAGTC | 3 cut(s) | 312, 1390, 1479 |
| PpuMI | RGGWCCY | 1 cut(s) | 1864 |
| PscI | ACATGT | 1 cut(s) | 207 |
| PshBI | ATTAAT | 1 cut(s) | 900 |
| PsiI | TTATAA | 1 cut(s) | 1071 |
| Psp1406I | AACGTT | 1 cut(s) | 60 |
| Psp5II | RGGWCCY | 1 cut(s) | 1864 |
| Psp6I | CCWGG | 1 cut(s) | 73 |
| PspFI | CCCAGC | 1 cut(s) | 52 |
| PspGI | CCWGG | 1 cut(s) | 73 |
| PspN4I | GGNNCC | 6 cut(s) | 483, 511, 1017, 1293, 1608, 1865 |
| PspPI | GGNCC | 2 cut(s) | 482, 1864 |
| PspPPI | RGGWCCY | 1 cut(s) | 1864 |
| PsuI | RGATCY | 1 cut(s) | 1498 |
| PsyI | GACNNNGTC | 1 cut(s) | 1118 |
| PvuII | CAGCTG | 1 cut(s) | 700 |
| RsaI | GTAC | 4 cut(s) | 106, 256, 453, 1983 |
| RsaNI | GTAC | 4 cut(s) | 105, 255, 452, 1982 |
| RseI | CAYNNNNRTG | 5 cut(s) | 333, 471, 1677, 1883, 2001 |
| SaqAI | TTAA | 7 cut(s) | 101, 653, 738, 876, 900, 956, 1145 |
| SatI | GCNGC | 7 cut(s) | 246, 363, 427, 430, 1639, 1806, 1892 |
| Sau3AI | GATC | 4 cut(s) | 21, 881, 1104, 1498 |
| Sau96I | GGNCC | 2 cut(s) | 482, 1864 |
| ScaI | AGTACT | 1 cut(s) | 453 |
| SchI | GAGTC | 3 cut(s) | 313, 1391, 1480 |
| ScrFI | CCNGG | 1 cut(s) | 75 |
| SduI | GDGCHC | 3 cut(s) | 153, 1480, 1960 |
| SfaNI | GCATC | 3 cut(s) | 726, 1309, 1672 |
| SfuI | TTCGAA | 1 cut(s) | 1452 |
| SinI | GGWCC | 1 cut(s) | 1864 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 333, 471, 1677, 1883, 2001 |
| SmlI | CTYRAG | 5 cut(s) | 544, 955, 1379, 1939, 1959 |
| SmoI | CTYRAG | 5 cut(s) | 544, 955, 1379, 1939, 1959 |
| Sse9I | AATT | 9 cut(s) | 249, 323, 371, 418, 901, 1257, 1357, 1434, 1588 |
| SspMI | CTAG | 1 cut(s) | 891 |
| StyD4I | CCNGG | 1 cut(s) | 73 |
| StyI | CCWWGG | 2 cut(s) | 108, 1971 |
| TaaI | ACNGT | 5 cut(s) | 16, 342, 736, 761, 1318 |
| TaiI | ACGT | 3 cut(s) | 63, 1119, 1705 |
| TaqI | TCGA | 5 cut(s) | 1050, 1426, 1452, 1869, 1993 |
| TasI | AATT | 9 cut(s) | 249, 323, 371, 418, 901, 1257, 1357, 1434, 1588 |
| TatI | WGTACW | 1 cut(s) | 451 |
| TfiI | GAWTC | 6 cut(s) | 6, 1235, 1423, 1449, 1574, 1924 |
| Tru1I | TTAA | 7 cut(s) | 101, 653, 738, 876, 900, 956, 1145 |
| Tru9I | TTAA | 7 cut(s) | 101, 653, 738, 876, 900, 956, 1145 |
| TscAI | CASTG | 2 cut(s) | 979, 1983 |
| TseI | GCWGC | 7 cut(s) | 245, 362, 426, 429, 1638, 1805, 1891 |
| TspGWI | ACGGA | 2 cut(s) | 272, 1582 |
| TspRI | CASTG | 2 cut(s) | 979, 1983 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1118 |
| Vha464I | CTTAAG | 1 cut(s) | 955 |
| VpaK11BI | GGWCC | 1 cut(s) | 1864 |
| VspI | ATTAAT | 1 cut(s) | 900 |
| XapI | RAATTY | 3 cut(s) | 371, 1357, 1588 |
| XceI | RCATGY | 3 cut(s) | 211, 867, 2006 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 451, 1528 |
| XmiI | GTMKAC | 1 cut(s) | 177 |
| XspI | CTAG | 1 cut(s) | 891 |
| ZrmI | AGTACT | 1 cut(s) | 453 |
| Zsp2I | ATGCAT | 3 cut(s) | 33, 865, 985 |