Rroxscaffold_1G00039280

guanylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000278
Physical Location & Seq
Forward (+)
56879279 .. 56881304
2026 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00039280.1

Sequence Viewer

Length: 375 bp
ATGAGCCAATCGAAGGAGAAGAGGTCAAGCGGAAGAGACTTCGGATGCAAATTGGACGAAGATGAACCGCAAAGTCATCGGTCATATCGTGAATGGGTGGATGATAGAGTATTCCACAATGTGTCCAATGAAACCAACACATATGAACTATGGCTGAAGTTTGAGTCTTTGTTCGAGAAGAAGACCGCTGCCATGAAAGCTTTTCAAATCAAAGAGGTTATAAATATGAAGTACAAAGATAGTGTTAGAGTGACCGAGCAACTCAACAACTTCCAAAGTACAATCAATCAATTGGCCACGATGGACATGAAGATTAATGACGAGTTGCAAGCTTTGTTATTGTTGCAAGCTCGATACGACCGTTGGAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 map04621
Pfam Domains
Protein Families
GBP GBP_C

Protein Analysis

124

Amino Acids

14.86

Weight (kDa)

7.81

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 33 - 116 8e-17 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AciI CCGC 3 cut(s) 30, 68, 186
AcoI YGGCCR 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 176
AdeI CACNNNGTG 1 cut(s) 121
AfaI GTAC 2 cut(s) 233, 280
AfiI CCNNNNNNNGG 1 cut(s) 13
AgsI TTSAA 1 cut(s) 206
AluBI AGCT 3 cut(s) 200, 332, 350
AluI AGCT 3 cut(s) 200, 332, 350
Alw26I GTCTC 1 cut(s) 30
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 188
AseI ATTAAT 1 cut(s) 315
BaeI ACNNNNGTAYC 1 cut(s) 346
BalI TGGCCA 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 295
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BcoDI GTCTC 1 cut(s) 30
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
BmsI GCATC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 13
BseGI GGATG 2 cut(s) 50, 106
BseLI CCNNNNNNNGG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 175
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 13
BsmAI GTCTC 1 cut(s) 30
BsnI GGCC 1 cut(s) 296
BspACI CCGC 3 cut(s) 30, 68, 186
BspANI GGCC 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 2 cut(s) 14, 28
BstC8I GCNNGC 2 cut(s) 330, 348
BstF5I GGATG 2 cut(s) 50, 106
BstMAI GTCTC 1 cut(s) 30
BstMCI CGRYCG 1 cut(s) 361
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 296
BtsCI GGATG 2 cut(s) 50, 106
Cac8I GCNNGC 2 cut(s) 330, 348
Csp6I GTAC 2 cut(s) 232, 279
CviAII CATG 2 cut(s) 193, 307
CviJI RGCY 6 cut(s) 6, 154, 200, 296, 332, 350
CviKI_1 RGCY 6 cut(s) 6, 154, 200, 296, 332, 350
CviQI GTAC 2 cut(s) 232, 279
DraIII CACNNNGTG 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 14, 28
EarI CTCTTC 2 cut(s) 14, 28
Eco57I CTGAAG 1 cut(s) 176
FaeI CATG 2 cut(s) 196, 310
FaiI YATR 8 cut(s) 85, 142, 144, 151, 194, 221, 227, 308
FatI CATG 2 cut(s) 192, 306
FauNDI CATATG 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 2 cut(s) 57, 113
Fsp4HI GCNGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 1 cut(s) 296
Hin1II CATG 2 cut(s) 196, 310
HindIII AAGCTT 2 cut(s) 198, 330
HinfI GANTC 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 2 cut(s) 89, 175
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4V TGCA 3 cut(s) 48, 328, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
Hsp92II CATG 2 cut(s) 196, 310
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 250
MboII GAAGA 6 cut(s) 31, 45, 71, 190, 193, 322
MfeI CAATTG 1 cut(s) 290
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 2 cut(s) 50, 290
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 344
MnlI CCTC 2 cut(s) 15, 208
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 188
MunI CAATTG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeI CATATG 1 cut(s) 142
NlaIII CATG 2 cut(s) 196, 310
NmuCI GTSAC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 2 cut(s) 85, 358
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PshBI ATTAAT 1 cut(s) 315
PsiI TTATAA 1 cut(s) 221
RsaI GTAC 2 cut(s) 233, 280
RsaNI GTAC 2 cut(s) 232, 279
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 1 cut(s) 189
SchI GAGTC 1 cut(s) 173
SetI ASST 5 cut(s) 26, 202, 219, 334, 352
SfaNI GCATC 1 cut(s) 35
Sse9I AATT 2 cut(s) 50, 290
SsiI CCGC 3 cut(s) 30, 68, 186
TaaI ACNGT 1 cut(s) 362
TaqI TCGA 3 cut(s) 11, 174, 352
TaqII GACCGA 2 cut(s) 69, 269
TasI AATT 2 cut(s) 50, 290
TatI WGTACW 2 cut(s) 231, 278
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 6 cut(s) 78, 144, 159, 209, 242, 323
VspI ATTAAT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.