FvH4_2g22611

LRR receptor-like serine threonine-protein kinase At4g08850

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000278
Physical Location & Seq
Reverse (-)
18559462 .. 18561081
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g22611.t1

Sequence Viewer

Length: 1161 bp
ATGCCGTTTAATGAAGTAAAGACAAGTGAGGTGAAGACGAAGACTGATGTTGGTGTTGTAGATGAAGCAACAGAAGTTCCTCTAACCAAAGAGATCATGGAAGAGACTCCAGCTCAGGTGGAGCAAATTGAGCAGGTGGAGCAAATTGAGCAGGTGGAGCATGATAAAGGGGTTATCGAGATAGAAGTCTTAGAGCGGCAACAACAGTCACTAATACAAGCTCAGGTGGAGCAATTAGCACTGCGAACCTACGACTCAGTTCGTCAGTCGCTTGAGCAGGAGTTCCAGAGAAGCATAGCATTGGACAAGTATGCTCTAAGTTTCAGTCCAGGAGATCCAACCACGAAAAGGGAAGAAATGCATGATAAGGAAGTCATGAGTTGCAAAGCTCGGGTATTGGCTAAGGAGTATGCGTATAAAGAAAAGGATGTGTCTAGAATTCCAAAGTTAAAGACACAACTAAGGAGGGAATTCGACATGAAGGGTCTAGAAGCTGCACAACAGATCCTAGAAGTGAAGGGGGGATCATCTACAGTTGAGTTAGATGAGATGATGCATGTGTCTTATGCAAGAGTAGTGGGATGTCTTATGGCTAGAATCTTCAAAAGACCAGGTTTAACTCAAGGATTGAGCATTGTGTCAAAGTATGTGGTGAATCCGGGTAGACGATACTGGCAAGCAGCAACGTGGATTCTGTATTACTTGAGAAACACAAAGGAACATGAATTTCTGTTTGAAAGACAACAAGAACAAGCATGCATTGCTGGTCATGAGAGGTCAGATTTGGCAGGAGACTTAGACAAAGGAAGATCTGCAACAAGTAATGTATTTACTTGCAGCAAAGGTTCAGGAAGTTGTAGAACAACTATGGAATCAGCTGAGATATTGTCTACCACTGAAGTAGATTGCATGGCAGTAACAGAAGCTTCCGCAGAGGCGTTATGGCTTAATGGGTTAACGAGTGAGTTTGAGATTCAACAAAAAACTGTGGTGAAGAATGGTGTCATCAATTTGACAAGGAATCAAGTGTTTCAAGCAGAGACGAAGCATGTTGATGTTCGTGGTCATCGCAGCAAAGGTTGGTGTCACAGCTTGCTGAGTTGTGGTGGAGCACCTCCTCACTTGAGGTGCGTTAAGGCAAGAGGAGTCTTGCCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Pkinase RVT_2

Protein Analysis

387

Amino Acids

43.59

Weight (kDa)

6.07

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 124, 142
Acc36I ACCTGC 2 cut(s) 124, 142
AccBSI CCGCTC 1 cut(s) 196
AccI GTMKAC 2 cut(s) 664, 890
AciI CCGC 2 cut(s) 196, 930
AclWI GGATC 3 cut(s) 329, 499, 532
AcsI RAATTY 3 cut(s) 438, 470, 725
AcuI CTGAAG 1 cut(s) 918
AfiI CCNNNNNNNGG 1 cut(s) 348
AgsI TTSAA 4 cut(s) 604, 737, 977, 1034
AjnI CCWGG 2 cut(s) 328, 610
AluBI AGCT 7 cut(s) 113, 221, 389, 494, 878, 926, 1092
AluI AGCT 7 cut(s) 113, 221, 389, 494, 878, 926, 1092
Alw21I GWGCWC 1 cut(s) 1114
Alw26I GTCTC 3 cut(s) 98, 786, 1034
AlwI GGATC 3 cut(s) 329, 499, 532
Ama87I CYCGRG 1 cut(s) 390
ApeKI GCWGC 4 cut(s) 494, 680, 837, 1071
ApoI RAATTY 3 cut(s) 438, 470, 725
AsuC2I CCSGG 1 cut(s) 660
AsuHPI GGTGA 3 cut(s) 43, 664, 1003
AvaI CYCGRG 1 cut(s) 390
BbsI GAAGAC 2 cut(s) 41, 47
Bbv12I GWGCWC 1 cut(s) 1114
BbvI GCAGC 4 cut(s) 481, 692, 849, 1083
BciT130I CCWGG 2 cut(s) 330, 612
BcnI CCSGG 1 cut(s) 660
BcoDI GTCTC 3 cut(s) 98, 786, 1034
BfaI CTAG 4 cut(s) 435, 488, 509, 594
BfmI CTRYAG 1 cut(s) 531
BfuAI ACCTGC 2 cut(s) 124, 142
BglII AGATCT 1 cut(s) 809
BisI GCNGC 5 cut(s) 197, 495, 681, 838, 1072
BlsI GCNGC 5 cut(s) 198, 496, 682, 839, 1073
Bme1390I CCNGG 3 cut(s) 330, 612, 660
BmeT110I CYCGRG 1 cut(s) 390
BmrFI CCNGG 3 cut(s) 330, 612, 660
BmsI GCATC 1 cut(s) 543
BpiI GAAGAC 2 cut(s) 41, 47
BpmI CTGGAG 1 cut(s) 93
Bpu10I CCTNAGC 3 cut(s) 114, 222, 402
BpuEI CTTGAG 4 cut(s) 293, 606, 724, 1144
BpuMI CCSGG 1 cut(s) 660
BsaJI CCNNGG 1 cut(s) 1154
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 677
Bse3DI GCAATG 1 cut(s) 759
BseBI CCWGG 2 cut(s) 330, 612
BseDI CCNNGG 1 cut(s) 1154
BseGI GGATG 2 cut(s) 433, 587
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMI GCAATG 1 cut(s) 759
BseMII CTCAG 5 cut(s) 128, 236, 270, 870, 1088
BseNI ACTGG 1 cut(s) 677
BseRI GAGGAG 2 cut(s) 1107, 1158
BseXI GCAGC 4 cut(s) 481, 692, 849, 1083
BsgI GTGCAG 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 1114
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 1 cut(s) 659
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 3 cut(s) 98, 786, 1034
BsmBI CGTCTC 1 cut(s) 1034
BsoBI CYCGRG 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 1114
Bsp143I GATC 5 cut(s) 93, 334, 504, 524, 809
BspACI CCGC 2 cut(s) 196, 930
BspCNI CTCAG 5 cut(s) 127, 235, 269, 871, 1089
BspHI TCATGA 2 cut(s) 375, 769
BspMI ACCTGC 2 cut(s) 124, 142
BspPI GGATC 3 cut(s) 329, 499, 532
BsrBI CCGCTC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 759
BsrI ACTGG 1 cut(s) 677
BssECI CCNNGG 1 cut(s) 1154
BssMI GATC 5 cut(s) 93, 334, 504, 524, 809
BssT1I CCWWGG 1 cut(s) 1154
Bst2UI CCWGG 2 cut(s) 330, 612
Bst4CI ACNGT 3 cut(s) 207, 535, 988
Bst6I CTCTTC 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 761
BstC8I GCNNGC 3 cut(s) 678, 757, 1094
BstF5I GGATG 2 cut(s) 433, 587
BstKTI GATC 5 cut(s) 96, 337, 507, 527, 812
BstMAI GTCTC 3 cut(s) 98, 786, 1034
BstMBI GATC 5 cut(s) 93, 334, 504, 524, 809
BstMWI GCNNNNNNNGC 5 cut(s) 130, 139, 148, 157, 761
BstNI CCWGG 2 cut(s) 330, 612
BstNSI RCATGY 3 cut(s) 560, 759, 1052
BstSCI CCNGG 3 cut(s) 328, 610, 658
BstSFI CTRYAG 1 cut(s) 531
BstV1I GCAGC 4 cut(s) 481, 692, 849, 1083
BstV2I GAAGAC 2 cut(s) 41, 47
BstX2I RGATCY 3 cut(s) 334, 504, 809
BstYI RGATCY 3 cut(s) 334, 504, 809
BtgZI GCGATG 1 cut(s) 1052
BtsCI GGATG 2 cut(s) 433, 587
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 2 cut(s) 239, 894
BveI ACCTGC 2 cut(s) 124, 142
Cac8I GCNNGC 3 cut(s) 678, 757, 1094
CciI TCATGA 2 cut(s) 375, 769
CsiI ACCWGGT 1 cut(s) 610
CspCI CAANNNNNGTGG 4 cut(s) 558, 593, 630, 665
DpnI GATC 5 cut(s) 95, 336, 506, 526, 811
DpnII GATC 5 cut(s) 93, 334, 504, 524, 809
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 1154
Eco57I CTGAAG 1 cut(s) 918
Eco88I CYCGRG 1 cut(s) 390
EcoRI GAATTC 2 cut(s) 438, 470
EcoRII CCWGG 2 cut(s) 328, 610
EcoT14I CCWWGG 1 cut(s) 1154
EcoT22I ATGCAT 3 cut(s) 363, 558, 761
ErhI CCWWGG 1 cut(s) 1154
Esp3I CGTCTC 1 cut(s) 1034
FblI GTMKAC 2 cut(s) 664, 890
Fnu4HI GCNGC 5 cut(s) 197, 495, 681, 838, 1072
FokI GGATG 2 cut(s) 440, 594
Fsp4HI GCNGC 5 cut(s) 197, 495, 681, 838, 1072
FspBI CTAG 4 cut(s) 435, 488, 509, 594
GluI GCNGC 5 cut(s) 197, 495, 681, 838, 1072
GsuI CTGGAG 1 cut(s) 93
HapII CCGG 1 cut(s) 659
HincII GTYRAC 1 cut(s) 957
HindII GTYRAC 1 cut(s) 957
HindIII AAGCTT 1 cut(s) 924
HinfI GANTC 9 cut(s) 106, 254, 597, 655, 691, 872, 973, 1021, 1146
HpaI GTTAAC 1 cut(s) 957
HpaII CCGG 1 cut(s) 659
HphI GGTGA 3 cut(s) 43, 664, 1003
Hpy166II GTNNAC 3 cut(s) 665, 891, 957
Hpy188I TCNGA 1 cut(s) 781
Hpy188III TCNNGA 7 cut(s) 178, 286, 376, 435, 488, 770, 849
Hpy8I GTNNAC 3 cut(s) 665, 891, 957
HpyAV CCTTC 2 cut(s) 475, 511
HpyCH4III ACNGT 3 cut(s) 207, 535, 988
HpyCH4IV ACGT 1 cut(s) 686
HpyCH4V TGCA 9 cut(s) 361, 384, 497, 556, 569, 759, 815, 837, 909
HpyF10VI GCNNNNNNNGC 5 cut(s) 130, 139, 148, 157, 761
HpySE526I ACGT 1 cut(s) 686
KspAI GTTAAC 1 cut(s) 957
Kzo9I GATC 5 cut(s) 93, 334, 504, 524, 809
LmnI GCTCC 5 cut(s) 121, 139, 157, 229, 1109
Lsp1109I GCAGC 4 cut(s) 481, 692, 849, 1083
LweI GCATC 1 cut(s) 543
MabI ACCWGGT 1 cut(s) 610
MaeI CTAG 4 cut(s) 435, 488, 509, 594
MaeII ACGT 1 cut(s) 686
MaeIII GTNAC 3 cut(s) 207, 916, 1085
MalI GATC 5 cut(s) 95, 336, 506, 526, 811
MbiI CCGCTC 1 cut(s) 196
MboI GATC 5 cut(s) 93, 334, 504, 524, 809
MboII GAAGA 7 cut(s) 46, 52, 113, 365, 592, 819, 1006
MflI RGATCY 3 cut(s) 334, 504, 809
MhlI GDGCHC 1 cut(s) 1114
MluCI AATT 7 cut(s) 126, 144, 233, 438, 470, 725, 1009
MlyI GAGTC 3 cut(s) 100, 248, 1155
MmeI TCCRAC 1 cut(s) 362
MnlI CCTC 9 cut(s) 22, 90, 459, 768, 928, 1119, 1125, 1128, 1136
Mph1103I ATGCAT 3 cut(s) 363, 558, 761
MseI TTAA 6 cut(s) 9, 449, 617, 948, 956, 1134
MslI CAYNNNNRTG 1 cut(s) 1053
MspA1I CMGCKG 1 cut(s) 878
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 3 cut(s) 330, 612, 660
MvaI CCWGG 2 cut(s) 330, 612
MwoI GCNNNNNNNGC 5 cut(s) 130, 139, 148, 157, 761
NciI CCSGG 1 cut(s) 660
NdeII GATC 5 cut(s) 93, 334, 504, 524, 809
NmuCI GTSAC 2 cut(s) 207, 1085
NsiI ATGCAT 3 cut(s) 363, 558, 761
NspI RCATGY 3 cut(s) 560, 759, 1052
PaeI GCATGC 1 cut(s) 759
PagI TCATGA 2 cut(s) 375, 769
PaqCI CACCTGC 2 cut(s) 124, 142
PfeI GAWTC 6 cut(s) 597, 655, 691, 872, 973, 1021
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 5 cut(s) 198, 496, 682, 839, 1073
PleI GAGTC 3 cut(s) 100, 248, 1154
PpsI GAGTC 3 cut(s) 100, 248, 1154
Psp6I CCWGG 2 cut(s) 328, 610
PspGI CCWGG 2 cut(s) 328, 610
PsuI RGATCY 3 cut(s) 334, 504, 809
PvuII CAGCTG 1 cut(s) 878
RseI CAYNNNNRTG 1 cut(s) 1053
SaqAI TTAA 6 cut(s) 9, 449, 617, 948, 956, 1134
SatI GCNGC 5 cut(s) 197, 495, 681, 838, 1072
Sau3AI GATC 5 cut(s) 93, 334, 504, 524, 809
SchI GAGTC 3 cut(s) 100, 248, 1155
ScrFI CCNGG 3 cut(s) 330, 612, 660
SduI GDGCHC 1 cut(s) 1114
SexAI ACCWGGT 1 cut(s) 610
SfaNI GCATC 1 cut(s) 543
SfcI CTRYAG 1 cut(s) 531
SmiMI CAYNNNNRTG 1 cut(s) 1053
SmlI CTYRAG 4 cut(s) 272, 621, 703, 1123
SmoI CTYRAG 4 cut(s) 272, 621, 703, 1123
SphI GCATGC 1 cut(s) 759
Sse9I AATT 7 cut(s) 126, 144, 233, 438, 470, 725, 1009
SsiI CCGC 2 cut(s) 196, 930
SspMI CTAG 4 cut(s) 435, 488, 509, 594
StyD4I CCNGG 3 cut(s) 328, 610, 658
StyI CCWWGG 1 cut(s) 1154
TaaI ACNGT 3 cut(s) 207, 535, 988
TaiI ACGT 1 cut(s) 689
TaqI TCGA 2 cut(s) 177, 474
TasI AATT 7 cut(s) 126, 144, 233, 438, 470, 725, 1009
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 6 cut(s) 597, 655, 691, 872, 973, 1021
Tru1I TTAA 6 cut(s) 9, 449, 617, 948, 956, 1134
Tru9I TTAA 6 cut(s) 9, 449, 617, 948, 956, 1134
TscAI CASTG 2 cut(s) 246, 901
TseFI GTSAC 2 cut(s) 207, 1085
TseI GCWGC 4 cut(s) 494, 680, 837, 1071
Tsp45I GTSAC 2 cut(s) 207, 1085
TspDTI ATGAA 4 cut(s) 27, 78, 494, 738
TspRI CASTG 2 cut(s) 246, 901
XapI RAATTY 3 cut(s) 438, 470, 725
XbaI TCTAGA 2 cut(s) 434, 487
XceI RCATGY 3 cut(s) 560, 759, 1052
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XmiI GTMKAC 2 cut(s) 664, 890
XspI CTAG 4 cut(s) 435, 488, 509, 594
Zsp2I ATGCAT 3 cut(s) 363, 558, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.