Rh5BG356100

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000278
Physical Location & Seq
Reverse (-)
55286784 .. 55289194
2411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG356100.1

Sequence Viewer

Length: 708 bp
ATGATGGAGTCGACTACGATGACTGACCATATCAACTCTCGTAACACCTTATTTTCACAGCTCACAGCAATGGGGCATAACATAGAGACGGGTGAACGTGCTGAAATTCTACTTCAAAGTCTACCTGATTTGTATGATAAACTCATCTTCAACTTAACCAACAATTTAGAAATATTAGTCTTCGATGATATTGCAGCTGCGGTTCTTGAAGAAAAAAGTCGGCGCAAGAGCAAAGAAGATAGATTGGGAGGCTCACAGCAGGTTGAAGCTTTGATGATAACGAGAGAGAGATCAATGGAACGTGGCCCCAGTGGGAGTCAAAATCAGAGTAGACCAAAATCAAGAAGTAAGAAGAGTGTCAAGTGTCATCACTGTGGCAAGAAAAGGCATTACAAAAGGGAGTGTTGGCATCTCAAGAAGAATGAAGAAGCCAAAGGAAAAGGTCCTGAATCGTCAAGAGCTCAAGGTTGTGTAGCAAGCACCTCAGATGATGGTGAAGTTTTATACAGGGAGGCAACAATAGTTACTGAAGGGAGGAGAAAATTTGCTGATATCTGGCTTATGGACTCAAGAGCAACATGGCATATGACCCATCGTAGAGAATGGTTCCACCAATATGAACTTAACTCAGGAGGATCTATGTTCATGGGAGATGATTATCCCTATGAGATTGCTGGTATTGGTACCTTCAAAGTGAAGATGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
rve

Protein Analysis

235

Amino Acids

27.03

Weight (kDa)

8.8

Isoelectric Point (pI)

61.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 1 - 79 1.4e-09 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 186 - 234 7.9e-12 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
Acc65I GGTACC 1 cut(s) 683
AccB1I GGYRCC 1 cut(s) 683
AccI GTMKAC 3 cut(s) 11, 121, 331
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 643
AcsI RAATTY 2 cut(s) 105, 542
AcuI CTGAAG 1 cut(s) 549
AfaI GTAC 1 cut(s) 685
AgsI TTSAA 5 cut(s) 116, 151, 209, 266, 691
AluBI AGCT 4 cut(s) 61, 197, 269, 461
AluI AGCT 4 cut(s) 61, 197, 269, 461
Alw21I GWGCWC 1 cut(s) 463
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 643
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 194, 197
ApoI RAATTY 2 cut(s) 105, 542
Asp718I GGTACC 1 cut(s) 683
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 2 cut(s) 305, 443
AsuHPI GGTGA 2 cut(s) 104, 506
AvaII GGWCC 1 cut(s) 443
BanI GGYRCC 1 cut(s) 683
BanII GRGCYC 1 cut(s) 463
BbsI GAAGAC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 463
BbvI GCAGC 2 cut(s) 184, 206
BccI CCATC 2 cut(s) 485, 600
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BcoDI GTCTC 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 250
BisI GCNGC 2 cut(s) 195, 198
BlsI GCNGC 2 cut(s) 196, 199
Bme18I GGWCC 1 cut(s) 443
BmgT120I GGNCC 2 cut(s) 305, 443
BmiI GGNNCC 3 cut(s) 307, 608, 685
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 418
BmuI ACTGGG 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 172
BpuEI CTTGAG 3 cut(s) 398, 447, 553
BsaBI GATNNNNATC 1 cut(s) 657
Bse1I ACTGG 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 657
BseJI GATNNNNATC 1 cut(s) 657
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 2 cut(s) 498, 642
BseNI ACTGG 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 550
BseXI GCAGC 2 cut(s) 184, 206
BshFI GGCC 1 cut(s) 306
BshNI GGYRCC 1 cut(s) 683
BsiHKAI GWGCWC 1 cut(s) 463
BsmAI GTCTC 1 cut(s) 80
BsmBI CGTCTC 1 cut(s) 80
BsnI GGCC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 2 cut(s) 290, 635
BspACI CCGC 1 cut(s) 200
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 2 cut(s) 497, 641
BspLI GGNNCC 3 cut(s) 307, 608, 685
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 1 cut(s) 643
BspT107I GGYRCC 1 cut(s) 683
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 309
BssMI GATC 2 cut(s) 290, 635
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 2 cut(s) 484, 628
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 2 cut(s) 293, 638
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 2 cut(s) 290, 635
BstV1I GCAGC 2 cut(s) 184, 206
BstV2I GAAGAC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 635
BstYI RGATCY 1 cut(s) 635
BsuRI GGCC 1 cut(s) 306
BtsIMutI CAGTG 2 cut(s) 316, 370
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 478
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 305, 443
Csp6I GTAC 1 cut(s) 684
CviAII CATG 2 cut(s) 579, 646
CviJI RGCY 8 cut(s) 61, 197, 252, 269, 306, 431, 461, 559
CviKI_1 RGCY 8 cut(s) 61, 197, 252, 269, 306, 431, 461, 559
CviQI GTAC 1 cut(s) 684
DdeI CTNAG 2 cut(s) 484, 628
DpnI GATC 2 cut(s) 292, 637
DpnII GATC 2 cut(s) 290, 635
Eam1104I CTCTTC 1 cut(s) 347
EarI CTCTTC 1 cut(s) 347
Ecl136II GAGCTC 1 cut(s) 461
Eco24I GRGCYC 1 cut(s) 463
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 443
Eco53kI GAGCTC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 549
EcoICRI GAGCTC 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 443
EcoRV GATATC 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 463
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 2 cut(s) 582, 649
FatI CATG 2 cut(s) 578, 645
FauNDI CATATG 1 cut(s) 585
FblI GTMKAC 3 cut(s) 11, 121, 331
Fnu4HI GCNGC 2 cut(s) 195, 198
FriOI GRGCYC 1 cut(s) 463
Fsp4HI GCNGC 2 cut(s) 195, 198
GlaI GCGC 1 cut(s) 224
GluI GCNGC 2 cut(s) 195, 198
HaeIII GGCC 1 cut(s) 306
HhaI GCGC 1 cut(s) 225
Hin1II CATG 2 cut(s) 582, 649
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 4 cut(s) 8, 316, 449, 566
HphI GGTGA 2 cut(s) 104, 506
Hpy166II GTNNAC 4 cut(s) 12, 95, 122, 332
Hpy188I TCNGA 2 cut(s) 327, 487
Hpy188III TCNNGA 7 cut(s) 206, 342, 415, 446, 456, 570, 630
Hpy8I GTNNAC 4 cut(s) 12, 95, 122, 332
HpyAV CCTTC 2 cut(s) 524, 697
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 2 cut(s) 97, 301
HpyCH4V TGCA 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 484, 628
HpySE526I ACGT 2 cut(s) 97, 301
Hsp92II CATG 2 cut(s) 582, 649
HspAI GCGC 1 cut(s) 223
KpnI GGTACC 1 cut(s) 687
Kzo9I GATC 2 cut(s) 290, 635
LpnPI CCDG 8 cut(s) 138, 245, 322, 459, 493, 541, 615, 660
Lsp1109I GCAGC 2 cut(s) 184, 206
LweI GCATC 1 cut(s) 418
MaeII ACGT 2 cut(s) 97, 301
MaeIII GTNAC 2 cut(s) 41, 523
MalI GATC 2 cut(s) 292, 637
MboI GATC 2 cut(s) 290, 635
MboII GAAGA 7 cut(s) 139, 172, 221, 248, 364, 430, 437
MflI RGATCY 1 cut(s) 635
MhlI GDGCHC 1 cut(s) 463
MluCI AATT 3 cut(s) 105, 163, 542
MlyI GAGTC 3 cut(s) 17, 325, 560
MnlI CCTC 5 cut(s) 242, 493, 505, 528, 626
MseI TTAA 2 cut(s) 155, 624
MslI CAYNNNNRTG 3 cut(s) 68, 372, 615
MspA1I CMGCKG 1 cut(s) 197
NdeI CATATG 1 cut(s) 585
NdeII GATC 2 cut(s) 290, 635
NlaIII CATG 2 cut(s) 582, 649
NlaIV GGNNCC 3 cut(s) 307, 608, 685
PfeI GAWTC 1 cut(s) 449
PkrI GCNGC 2 cut(s) 196, 199
PleI GAGTC 3 cut(s) 16, 324, 560
PpsI GAGTC 3 cut(s) 16, 324, 560
PpuMI RGGWCCY 1 cut(s) 443
Psp124BI GAGCTC 1 cut(s) 463
Psp5II RGGWCCY 1 cut(s) 443
PspN4I GGNNCC 3 cut(s) 307, 608, 685
PspPI GGNCC 2 cut(s) 305, 443
PspPPI RGGWCCY 1 cut(s) 443
PsuI RGATCY 1 cut(s) 635
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 685
RsaNI GTAC 1 cut(s) 684
RseI CAYNNNNRTG 3 cut(s) 68, 372, 615
SacI GAGCTC 1 cut(s) 463
SalI GTCGAC 1 cut(s) 10
SaqAI TTAA 2 cut(s) 155, 624
SatI GCNGC 2 cut(s) 195, 198
Sau3AI GATC 2 cut(s) 290, 635
Sau96I GGNCC 2 cut(s) 305, 443
SchI GAGTC 3 cut(s) 17, 325, 560
SduI GDGCHC 1 cut(s) 463
SfaNI GCATC 1 cut(s) 418
SinI GGWCC 1 cut(s) 443
SmiMI CAYNNNNRTG 3 cut(s) 68, 372, 615
SmlI CTYRAG 3 cut(s) 413, 462, 568
SmoI CTYRAG 3 cut(s) 413, 462, 568
Sse9I AATT 3 cut(s) 105, 163, 542
SsiI CCGC 1 cut(s) 200
SspI AATATT 1 cut(s) 174
SstI GAGCTC 1 cut(s) 463
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 2 cut(s) 100, 304
TaqI TCGA 2 cut(s) 11, 183
TasI AATT 3 cut(s) 105, 163, 542
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 2 cut(s) 155, 624
Tru9I TTAA 2 cut(s) 155, 624
TscAI CASTG 2 cut(s) 316, 377
TseI GCWGC 2 cut(s) 194, 197
TspDTI ATGAA 3 cut(s) 438, 633, 634
TspRI CASTG 2 cut(s) 316, 377
VpaK11BI GGWCC 1 cut(s) 443
XapI RAATTY 2 cut(s) 105, 542
XmiI GTMKAC 3 cut(s) 11, 121, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.