MD00G1179400.v1.1
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000278
Physical Location & Seq
Forward (+)
42097174 .. 42099147
1974 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1179400.v1.1.491

Sequence Viewer

Length: 261 bp
ATGAGGGAGACATTAGCAAGTGTGTTGTGGCAAAAATTGGAAGACAAGTATATAACGAAGAGTGCAGAGAACCGGCTACACTTGAAGAAAAAGCTTTACTGCTTCCAATACAAAGAAGAGATCCGAGAGGTGTGCACCAGAAAAACAAAGAAAAAAAGTAGAAGTGCTGAAGAGAAGAAAAATGTGCTTTCTCTTGAAGAGAAGAAAATTGTGTTTTCTCTTTGGTTAGTAATCATCCATCAAGGTTTGGTGCTATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

87

Amino Acids

10.31

Weight (kDa)

9.73

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 189
AgsI TTSAA 2 cut(s) 85, 197
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 2
Alw44I GTGCAC 1 cut(s) 133
AlwI GGATC 1 cut(s) 115
ApaLI GTGCAC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 137
BccI CCATC 1 cut(s) 246
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 48
Bse118I RCCGGY 1 cut(s) 72
BseGI GGATG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 2
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 1 cut(s) 120
BspPI GGATC 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssMI GATC 1 cut(s) 120
Bst6I CTCTTC 4 cut(s) 53, 111, 165, 192
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BtsCI GGATG 1 cut(s) 234
Cfr10I RCCGGY 1 cut(s) 72
CviJI RGCY 2 cut(s) 76, 94
CviKI_1 RGCY 2 cut(s) 76, 94
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eam1104I CTCTTC 4 cut(s) 53, 111, 165, 192
EarI CTCTTC 4 cut(s) 53, 111, 165, 192
Eco57I CTGAAG 1 cut(s) 189
FaiI YATR 2 cut(s) 51, 53
FokI GGATG 1 cut(s) 221
FspBI CTAG 1 cut(s) 259
HapII CCGG 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 92
HpaII CCGG 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 125
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 65, 135
Kzo9I GATC 1 cut(s) 120
LpnPI CCDG 2 cut(s) 86, 151
MaeI CTAG 1 cut(s) 259
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 8 cut(s) 53, 70, 97, 128, 182, 187, 209, 214
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 2 cut(s) 35, 207
MnlI CCTC 1 cut(s) 121
MspI CCGG 1 cut(s) 73
NdeII GATC 1 cut(s) 120
PsuI RGATCY 1 cut(s) 120
Sau3AI GATC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 137
SetI ASST 3 cut(s) 96, 132, 247
SgeI CNNG 8 cut(s) 30, 58, 85, 94, 137, 150, 206, 254
Sse9I AATT 2 cut(s) 35, 207
SspMI CTAG 1 cut(s) 259
TasI AATT 2 cut(s) 35, 207
VneI GTGCAC 1 cut(s) 133
XspI CTAG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.