RchiOBHm_Chr1g0333711

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000278
Physical Location & Seq
Forward (+)
25904023 .. 25905539
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56251

Sequence Viewer

Length: 1179 bp
ATGGCAGATGACAAGGAAGACGTAGGCAGCAATGTGATGCCCATTATGTTGAATGGGAAGGATAATTTCACATTATGGCAGAGGAAGATGAAAAGTGTCCTGATTCTACAAGGTCTGTACGAGGCTATTCTCGAGATAGAGAATAAGGCAGCTAATATGGCAGACAAGGTTTGGCAGAAGATGGACAAGAAGGCAAAGAGCTTTATAGAGCTCCATCTTGCTGATCATGTATTGGTTCATGTATTGGCTAGTGCCGGTGAGAATATGAACAGCAAAGAGACCTGGGATTATCTCGAGAAGGTTTACGCGGGTAGGGTTCATGTTGGTGAGAATATGGGCAGCAACAAGACATTGGACAATGTCAAAGAGGTTGACGCGGATAAACTCTTCTTGAAAGACGAACTGTATAGTCTTTGGATGGAAGAAGGCAGGGATCTGCAGGATCATCTGAATAAATTTCAGATATGTGTTGCTAATTTATCAAAGGTGGATGTGATGTATAAAGATGAAGAGAAAGCACTTATGTTGCTAAGATCTTTACCAGCTTCATTCGAGCACTTCATCACCAGACTCGTTTCCGGTAAGGATTCTCTCAAGTACGGTGAGATTACCGAAGCTATTCAATCTTATTTTAAGATGAGTAGGGAGACCGAAAGCTCTCAAGAAGGAGGCATTCATGTCAAGGGCAAGGAGACAAGTCAGTGGACGAGTAAGAAGGATATATCTGGTAACAAGGGTACATCAAAATCCAAGGAAAAATACAAGAAAGGTTGCTTCAAATGTGGTGCTACCGACCACTTGAAAAGAAACTGCAGAGAAGGGAAGATGAGAGCAGAGGCGATGGCAGGGAGTTCAAACACAGCCAATGTAGTCATCAAACTAGATAAAGATGACGGTGAACTCCTTGTGGTAGCAGCCAGCTCCAATGCTTTCAGAAATTGGATCTTGGATACCGGTTGTACATTCCACATGTGTGCAATTCGAGAATGGTTTGACACATTTGAGGACAGTAGCAGTGGAGAGGTTTTTAGGGGAGATGACTCATCATGTAGGATCCTAGGTATTGGATCTGTGAAAATCAGAATGCATGATGGAGTTGTTAGAACGCTGGAGAATGTCAGATATATTCCTAAGTTAAGGAAGAACTTGATATCTTTGGGTACTTTGGACAAGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC PAH

Protein Analysis

392

Amino Acids

44.27

Weight (kDa)

7.13

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 30 - 208 1.9e-20 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 314 - 391 2.6e-28 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 308, 377
AciI CCGC 2 cut(s) 308, 377
AclWI GGATC 6 cut(s) 441, 450, 950, 1048, 1061, 1075
AcsI RAATTY 1 cut(s) 455
AfaI GTAC 5 cut(s) 119, 599, 739, 961, 1162
AflIII ACRYGT 1 cut(s) 969
AgeI ACCGGT 1 cut(s) 953
AgsI TTSAA 6 cut(s) 52, 394, 623, 778, 802, 855
AjnI CCWGG 1 cut(s) 281
AleI CACNNNNGTG 1 cut(s) 972
AluBI AGCT 7 cut(s) 152, 201, 211, 545, 617, 657, 921
AluI AGCT 7 cut(s) 152, 201, 211, 545, 617, 657, 921
Alw21I GWGCWC 2 cut(s) 213, 558
Alw26I GTCTC 3 cut(s) 272, 641, 686
AlwI GGATC 6 cut(s) 441, 450, 950, 1048, 1061, 1075
Ama87I CYCGRG 2 cut(s) 131, 293
AoxI GGCC 1 cut(s) 1173
ApeKI GCWGC 4 cut(s) 27, 149, 339, 914
ApoI RAATTY 1 cut(s) 455
AsiGI ACCGGT 1 cut(s) 953
Asp700I GAANNNNTTC 1 cut(s) 618
AspA2I CCTAGG 1 cut(s) 1057
AsuHPI GGTGA 5 cut(s) 269, 338, 556, 614, 908
AvaI CYCGRG 2 cut(s) 131, 293
AvrII CCTAGG 1 cut(s) 1057
BamHI GGATCC 1 cut(s) 1053
BanII GRGCYC 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 2 cut(s) 213, 558
BbvI GCAGC 4 cut(s) 39, 161, 351, 926
BccI CCATC 5 cut(s) 175, 222, 412, 835, 1085
BciT130I CCWGG 1 cut(s) 283
BciVI GTATCC 1 cut(s) 943
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 3 cut(s) 272, 641, 686
BfaI CTAG 3 cut(s) 249, 881, 1058
BfmI CTRYAG 2 cut(s) 437, 811
BfuI GTATCC 1 cut(s) 943
BglII AGATCT 1 cut(s) 533
BisI GCNGC 4 cut(s) 28, 150, 340, 915
BlnI CCTAGG 1 cut(s) 1057
BlsI GCNGC 4 cut(s) 29, 151, 341, 916
Bme1390I CCNGG 1 cut(s) 283
BmeT110I CYCGRG 2 cut(s) 131, 293
BmiI GGNNCC 1 cut(s) 1055
BmrFI CCNGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 1130
BpuEI CTTGAG 2 cut(s) 578, 645
BsaI GGTCTC 2 cut(s) 272, 641
BsaJI CCNNGG 3 cut(s) 282, 750, 1057
BsaWI WCCGGW 2 cut(s) 578, 953
Bse118I RCCGGY 2 cut(s) 254, 953
Bse3DI GCAATG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 3 cut(s) 282, 750, 1057
BseGI GGATG 2 cut(s) 423, 496
BseMI GCAATG 1 cut(s) 37
BseXI GCAGC 4 cut(s) 39, 161, 351, 926
Bsh1236I CGCG 2 cut(s) 308, 377
BshFI GGCC 1 cut(s) 1175
BshTI ACCGGT 1 cut(s) 953
BsiHKAI GWGCWC 2 cut(s) 213, 558
BsiHKCI CYCGRG 2 cut(s) 131, 293
BsiSI CCGG 3 cut(s) 255, 579, 954
BsmAI GTCTC 3 cut(s) 272, 641, 686
BsmI GAATGC 2 cut(s) 672, 1089
BsnI GGCC 1 cut(s) 1175
Bso31I GGTCTC 2 cut(s) 272, 641
BsoBI CYCGRG 2 cut(s) 131, 293
Bsp1286I GDGCHC 2 cut(s) 213, 558
Bsp1407I TGTACA 1 cut(s) 959
Bsp143I GATC 7 cut(s) 223, 433, 442, 533, 942, 1053, 1067
BspACI CCGC 2 cut(s) 308, 377
BspANI GGCC 1 cut(s) 1175
BspFNI CGCG 2 cut(s) 308, 377
BspLI GGNNCC 1 cut(s) 1055
BspMAI CTGCAG 2 cut(s) 441, 815
BspPI GGATC 6 cut(s) 441, 450, 950, 1048, 1061, 1075
BspTNI GGTCTC 2 cut(s) 272, 641
BsrDI GCAATG 1 cut(s) 37
BsrFI RCCGGY 2 cut(s) 254, 953
BsrGI TGTACA 1 cut(s) 959
BssAI RCCGGY 2 cut(s) 254, 953
BssECI CCNNGG 3 cut(s) 282, 750, 1057
BssMI GATC 7 cut(s) 223, 433, 442, 533, 942, 1053, 1067
BssT1I CCWWGG 2 cut(s) 750, 1057
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 4 cut(s) 405, 602, 896, 1010
Bst6I CTCTTC 2 cut(s) 392, 504
BstAUI TGTACA 1 cut(s) 959
BstC8I GCNNGC 1 cut(s) 919
BstDEI CTNAG 2 cut(s) 530, 1131
BstF5I GGATG 2 cut(s) 423, 496
BstFNI CGCG 2 cut(s) 308, 377
BstKTI GATC 7 cut(s) 226, 436, 445, 536, 945, 1056, 1070
BstMAI GTCTC 3 cut(s) 272, 641, 686
BstMBI GATC 7 cut(s) 223, 433, 442, 533, 942, 1053, 1067
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 973
BstSCI CCNGG 1 cut(s) 281
BstSFI CTRYAG 2 cut(s) 437, 811
BstUI CGCG 2 cut(s) 308, 377
BstV1I GCAGC 4 cut(s) 39, 161, 351, 926
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 5 cut(s) 433, 533, 942, 1053, 1067
BstYI RGATCY 5 cut(s) 433, 533, 942, 1053, 1067
BsuI GTATCC 1 cut(s) 943
BsuRI GGCC 1 cut(s) 1175
BtgZI GCGATG 1 cut(s) 854
BtsCI GGATG 2 cut(s) 423, 496
BtsI GCAGTG 1 cut(s) 1021
BtsIMutI CAGTG 2 cut(s) 707, 1021
Cac8I GCNNGC 1 cut(s) 919
Cfr10I RCCGGY 2 cut(s) 254, 953
CseI GACGC 1 cut(s) 383
Csp6I GTAC 5 cut(s) 118, 598, 738, 960, 1161
CspAI ACCGGT 1 cut(s) 953
CviAII CATG 7 cut(s) 227, 239, 320, 677, 970, 1047, 1088
CviQI GTAC 5 cut(s) 118, 598, 738, 960, 1161
DdeI CTNAG 2 cut(s) 530, 1131
DpnI GATC 7 cut(s) 225, 435, 444, 535, 944, 1055, 1069
DpnII GATC 7 cut(s) 223, 433, 442, 533, 942, 1053, 1067
Eam1104I CTCTTC 2 cut(s) 392, 504
EarI CTCTTC 2 cut(s) 392, 504
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 750, 1057
Eco147I AGGCCT 1 cut(s) 1175
Eco24I GRGCYC 1 cut(s) 213
Eco31I GGTCTC 2 cut(s) 272, 641
Eco32I GATATC 1 cut(s) 1152
Eco53kI GAGCTC 1 cut(s) 211
Eco88I CYCGRG 2 cut(s) 131, 293
EcoICRI GAGCTC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 281
EcoRV GATATC 1 cut(s) 1152
EcoT14I CCWWGG 2 cut(s) 750, 1057
EcoT22I ATGCAT 1 cut(s) 1089
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 2 cut(s) 750, 1057
FaeI CATG 7 cut(s) 230, 242, 323, 680, 973, 1050, 1091
FatI CATG 7 cut(s) 226, 238, 319, 676, 969, 1046, 1087
FauI CCCGC 1 cut(s) 301
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 4 cut(s) 28, 150, 340, 915
FokI GGATG 2 cut(s) 430, 503
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 4 cut(s) 28, 150, 340, 915
FspBI CTAG 3 cut(s) 249, 881, 1058
GluI GCNGC 4 cut(s) 28, 150, 340, 915
GsuI CTGGAG 1 cut(s) 1130
HaeIII GGCC 1 cut(s) 1175
HapII CCGG 3 cut(s) 255, 579, 954
HgaI GACGC 1 cut(s) 383
Hin1II CATG 7 cut(s) 230, 242, 323, 680, 973, 1050, 1091
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 4 cut(s) 103, 570, 587, 1040
HpaII CCGG 3 cut(s) 255, 579, 954
HphI GGTGA 5 cut(s) 269, 338, 556, 614, 908
Hpy166II GTNNAC 4 cut(s) 304, 373, 705, 899
Hpy188I TCNGA 5 cut(s) 450, 462, 935, 1082, 1121
Hpy188III TCNNGA 8 cut(s) 100, 131, 133, 293, 295, 391, 662, 983
Hpy8I GTNNAC 4 cut(s) 304, 373, 705, 899
HpyAV CCTTC 7 cut(s) 52, 184, 292, 419, 659, 709, 812
HpyCH4III ACNGT 4 cut(s) 405, 602, 896, 1010
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 4 cut(s) 439, 813, 977, 1087
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 530, 1131
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 7 cut(s) 230, 242, 323, 680, 973, 1050, 1091
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 7 cut(s) 223, 433, 442, 533, 942, 1053, 1067
LmnI GCTCC 2 cut(s) 216, 926
Lsp1109I GCAGC 4 cut(s) 39, 161, 351, 926
LweI GCATC 1 cut(s) 27
MaeI CTAG 3 cut(s) 249, 881, 1058
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 728
MalI GATC 7 cut(s) 225, 435, 444, 535, 944, 1055, 1069
MboI GATC 7 cut(s) 223, 433, 442, 533, 942, 1053, 1067
MboII GAAGA 8 cut(s) 29, 97, 190, 379, 434, 521, 835, 1153
MflI RGATCY 5 cut(s) 433, 533, 942, 1053, 1067
MhlI GDGCHC 2 cut(s) 213, 558
MluCI AATT 5 cut(s) 64, 455, 475, 937, 978
MlyI GAGTC 2 cut(s) 564, 1034
MnlI CCTC 7 cut(s) 75, 115, 361, 662, 829, 997, 1015
Mph1103I ATGCAT 1 cut(s) 1089
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 2 cut(s) 633, 1136
MslI CAYNNNNRTG 2 cut(s) 324, 972
MspI CCGG 3 cut(s) 255, 579, 954
MspR9I CCNGG 1 cut(s) 283
Mva1269I GAATGC 2 cut(s) 672, 1089
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 2 cut(s) 308, 377
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 7 cut(s) 223, 433, 442, 533, 942, 1053, 1067
NlaIII CATG 7 cut(s) 230, 242, 323, 680, 973, 1050, 1091
NlaIV GGNNCC 1 cut(s) 1055
NsiI ATGCAT 1 cut(s) 1089
NspI RCATGY 1 cut(s) 973
OliI CACNNNNGTG 1 cut(s) 972
PaeR7I CTCGAG 2 cut(s) 131, 293
PceI AGGCCT 1 cut(s) 1175
PciI ACATGT 1 cut(s) 969
PctI GAATGC 2 cut(s) 672, 1089
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 2 cut(s) 103, 587
PflFI GACNNNGTC 1 cut(s) 359
PinAI ACCGGT 1 cut(s) 953
PkrI GCNGC 4 cut(s) 29, 151, 341, 916
PleI GAGTC 2 cut(s) 564, 1034
PpsI GAGTC 2 cut(s) 564, 1034
PscI ACATGT 1 cut(s) 969
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 1055
PstI CTGCAG 2 cut(s) 441, 815
PsuI RGATCY 5 cut(s) 433, 533, 942, 1053, 1067
PsyI GACNNNGTC 1 cut(s) 359
RsaI GTAC 5 cut(s) 119, 599, 739, 961, 1162
RsaNI GTAC 5 cut(s) 118, 598, 738, 960, 1161
RseI CAYNNNNRTG 2 cut(s) 324, 972
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 633, 1136
SatI GCNGC 4 cut(s) 28, 150, 340, 915
Sau3AI GATC 7 cut(s) 223, 433, 442, 533, 942, 1053, 1067
SchI GAGTC 2 cut(s) 564, 1034
ScrFI CCNGG 1 cut(s) 283
SduI GDGCHC 2 cut(s) 213, 558
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 2 cut(s) 437, 811
Sfr274I CTCGAG 2 cut(s) 131, 293
SlaI CTCGAG 2 cut(s) 131, 293
SmiMI CAYNNNNRTG 2 cut(s) 324, 972
SmlI CTYRAG 4 cut(s) 131, 293, 593, 660
SmoI CTYRAG 4 cut(s) 131, 293, 593, 660
Sse9I AATT 5 cut(s) 64, 455, 475, 937, 978
SseBI AGGCCT 1 cut(s) 1175
SsiI CCGC 2 cut(s) 308, 377
SspMI CTAG 3 cut(s) 249, 881, 1058
SstI GAGCTC 1 cut(s) 213
StuI AGGCCT 1 cut(s) 1175
StyD4I CCNGG 1 cut(s) 281
StyI CCWWGG 2 cut(s) 750, 1057
TaaI ACNGT 4 cut(s) 405, 602, 896, 1010
TaiI ACGT 1 cut(s) 24
TaqI TCGA 4 cut(s) 132, 294, 552, 982
TaqII GACCGA 1 cut(s) 665
TasI AATT 5 cut(s) 64, 455, 475, 937, 978
TatI WGTACW 1 cut(s) 959
TfiI GAWTC 2 cut(s) 103, 587
Tru1I TTAA 2 cut(s) 633, 1136
Tru9I TTAA 2 cut(s) 633, 1136
TscAI CASTG 2 cut(s) 707, 1021
TseI GCWGC 4 cut(s) 27, 149, 339, 914
TspDTI ATGAA 8 cut(s) 104, 227, 281, 308, 522, 537, 550, 665
TspRI CASTG 2 cut(s) 707, 1021
Tth111I GACNNNGTC 1 cut(s) 359
XapI RAATTY 1 cut(s) 455
XceI RCATGY 1 cut(s) 973
XhoI CTCGAG 2 cut(s) 131, 293
XmaJI CCTAGG 1 cut(s) 1057
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 3 cut(s) 249, 881, 1058
Zsp2I ATGCAT 1 cut(s) 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.