FvH4_5g07492

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000278
Physical Location & Seq
Forward (+)
4380513 .. 4381541
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07492.t1

Sequence Viewer

Length: 1029 bp
ATGGAAGACAATCATGATGTCGAGATTAATCCTTTTGGTGGAGGTGGAGCTCGAATGGCAAGAACAACAGTGCAGAATGCAAAGTTTGAAGTGGAAAAATTTGATGGAACAAATAATTTCGGTATGTGGCAATGTGAAGTCAGAGATGTCTTGGCTCAGCAGGACTTGGATATGACTTTAGAGGATATGCCTGAAGATATGGATGAAGCAGAATGGATAAGGTTGAATCGGGTTGCTTGCTCGTCGATTCGGTTGTGTCTCGCTAAAGCCCAGAAGTATTCTGTGATGAGAGAGACGTCGGCGAAGATGTTATGGCAGAAACTGGAAGATAAGTATATGACAAAGAGCATAGAGAATCGTCTACACTTGAAGAAGAAGTTGTATCGGTTCCAGTTTAAAGGTACAAAGATGATTCAACACCTTGATGCTTTTAACAAGTTAATTGCTGATTTGTTAAACTTGGATGAAGAAATCAAGGATGAAGATAAAGCTTTACTGTTGTTGAATTCTTTGCCTGATGCATATGACCATTTAGCTACTACTTTGTTGTATGGTAAAGACACTATCAAGTTTGATGAAGTGTCTAATGCATTGATGAATTATGAGGTGAGGCATAAGGATAAATATGATAGTACTTCTAGTACTTTAGAGGCTTTGGTTGTGAGAGGTAGATCACTTGAAAGGAAAAGATTTGGTGGCAGGAAGAAATCTGGTTCAAGAGGAACTTCGAAGGACAAGAAGAGATTAGGAAGAGATGAATGTGCCTTTTGCCATAATAAAGGACATTGGAAGAATGATTGTCCAAAGCTTCGAAACAAGGGTGCAAGTTCTAGTGCTAATGTGGTACTTGCTGAGAATGAACCTGATTATGCTTTGTGTGTGTCTCCCATCAATGACAAAGACAAGTGGATAATGGATTGTGCTTGTACTGAGCATATGACTCCAAGAAAGGACTGGTTTACCACTTTGGATACAAATGTGAGTGGAAATGTTATAACATGTGATGATTATGGCTTGGAGAGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

343

Amino Acids

39.31

Weight (kDa)

6.72

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 64 - 208 2.6e-26 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 303 - 335 6.7e-07 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 995
AatII GACGTC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 361
AcsI RAATTY 2 cut(s) 98, 505
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 296
AfaI GTAC 5 cut(s) 403, 634, 643, 846, 928
AfiI CCNNNNNNNGG 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 998
AgsI TTSAA 7 cut(s) 89, 226, 370, 416, 505, 680, 717
AluBI AGCT 4 cut(s) 50, 491, 536, 808
AluI AGCT 4 cut(s) 50, 491, 536, 808
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 3 cut(s) 263, 287, 888
AlwNI CAGNNNCTG 1 cut(s) 322
ApoI RAATTY 2 cut(s) 98, 505
AseI ATTAAT 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 619
AsuII TTCGAA 2 cut(s) 728, 811
BaeI ACNNNNGTAYC 2 cut(s) 963, 996
BanII GRGCYC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 52
BccI CCATC 2 cut(s) 98, 896
BciVI GTATCC 1 cut(s) 964
BcoDI GTCTC 3 cut(s) 263, 287, 888
BfaI CTAG 2 cut(s) 639, 831
BfuI GTATCC 1 cut(s) 964
BlpI GCTNAGC 1 cut(s) 156
BmcAI AGTACT 2 cut(s) 634, 643
BmiI GGNNCC 1 cut(s) 389
BmsI GCATC 2 cut(s) 415, 508
BpiI GAAGAC 1 cut(s) 12
Bpu1102I GCTNAGC 1 cut(s) 156
Bpu14I TTCGAA 2 cut(s) 728, 811
BsaHI GRCGYC 1 cut(s) 296
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 3 cut(s) 327, 391, 959
Bse3DI GCAATG 1 cut(s) 137
BseGI GGATG 3 cut(s) 208, 469, 484
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 137
BseMII CTCAG 3 cut(s) 170, 843, 921
BseNI ACTGG 3 cut(s) 327, 391, 959
BsgI GTGCAG 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 3 cut(s) 263, 287, 888
BsmBI CGTCTC 1 cut(s) 287
BsmI GAATGC 1 cut(s) 82
Bsp119I TTCGAA 2 cut(s) 728, 811
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 671
Bsp1720I GCTNAGC 1 cut(s) 156
BspCNI CTCAG 3 cut(s) 169, 844, 922
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 389
BspT104I TTCGAA 2 cut(s) 728, 811
BsrDI GCAATG 1 cut(s) 137
BsrI ACTGG 3 cut(s) 327, 391, 959
BssMI GATC 1 cut(s) 671
BssNI GRCGYC 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 70, 498
Bst6I CTCTTC 2 cut(s) 734, 745
BstACI GRCGYC 1 cut(s) 296
BstBI TTCGAA 2 cut(s) 728, 811
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 3 cut(s) 156, 852, 930
BstF5I GGATG 3 cut(s) 208, 469, 484
BstKTI GATC 1 cut(s) 674
BstMAI GTCTC 3 cut(s) 263, 287, 888
BstMBI GATC 1 cut(s) 671
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 1002
BstV2I GAAGAC 1 cut(s) 12
BsuI GTATCC 1 cut(s) 964
BtsCI GGATG 3 cut(s) 208, 469, 484
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 238
CaiI CAGNNNCTG 1 cut(s) 322
CciI TCATGA 1 cut(s) 13
Csp6I GTAC 5 cut(s) 402, 633, 642, 845, 927
CviAII CATG 2 cut(s) 14, 999
CviJI RGCY 8 cut(s) 50, 155, 269, 491, 536, 653, 808, 1014
CviKI_1 RGCY 8 cut(s) 50, 155, 269, 491, 536, 653, 808, 1014
CviQI GTAC 5 cut(s) 402, 633, 642, 845, 927
DdeI CTNAG 3 cut(s) 156, 852, 930
DpnI GATC 1 cut(s) 673
DpnII GATC 1 cut(s) 671
DraI TTTAAA 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 734, 745
EarI CTCTTC 2 cut(s) 734, 745
Ecl136II GAGCTC 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 505
EcoT22I ATGCAT 2 cut(s) 523, 592
EcoT38I GRGCYC 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 287
FaeI CATG 2 cut(s) 17, 1002
FalI AAGNNNNNCTT 2 cut(s) 709, 741
FatI CATG 2 cut(s) 13, 998
FauNDI CATATG 2 cut(s) 523, 936
FblI GTMKAC 1 cut(s) 361
FokI GGATG 3 cut(s) 215, 476, 491
FriOI GRGCYC 1 cut(s) 52
FspBI CTAG 2 cut(s) 639, 831
Hin1I GRCGYC 1 cut(s) 296
Hin1II CATG 2 cut(s) 17, 1002
HindIII AAGCTT 2 cut(s) 489, 806
HinfI GANTC 5 cut(s) 226, 247, 355, 412, 940
HphI GGTGA 1 cut(s) 619
Hpy166II GTNNAC 2 cut(s) 362, 960
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 3 cut(s) 14, 22, 717
Hpy8I GTNNAC 2 cut(s) 362, 960
Hpy99I CGWCG 2 cut(s) 247, 301
HpyAV CCTTC 1 cut(s) 724
HpyCH4III ACNGT 2 cut(s) 70, 498
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 5 cut(s) 73, 80, 521, 590, 824
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 3 cut(s) 156, 852, 930
HpySE526I ACGT 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 296
Hsp92II CATG 2 cut(s) 17, 1002
Kzo9I GATC 1 cut(s) 671
LmnI GCTCC 1 cut(s) 47
LweI GCATC 2 cut(s) 415, 508
MaeI CTAG 2 cut(s) 639, 831
MaeII ACGT 1 cut(s) 296
MalI GATC 1 cut(s) 673
MboI GATC 1 cut(s) 671
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 5 cut(s) 98, 115, 441, 505, 598
MlyI GAGTC 1 cut(s) 934
MnlI CCTC 8 cut(s) 35, 175, 598, 603, 643, 659, 713, 1014
Mph1103I ATGCAT 2 cut(s) 523, 592
MseI TTAA 5 cut(s) 27, 396, 432, 440, 455
MslI CAYNNNNRTG 1 cut(s) 423
Mva1269I GAATGC 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeI CATATG 2 cut(s) 523, 936
NdeII GATC 1 cut(s) 671
NlaIII CATG 2 cut(s) 17, 1002
NlaIV GGNNCC 1 cut(s) 389
NsiI ATGCAT 2 cut(s) 523, 592
NspI RCATGY 1 cut(s) 1002
NspV TTCGAA 2 cut(s) 728, 811
PagI TCATGA 1 cut(s) 13
PciI ACATGT 1 cut(s) 998
PctI GAATGC 1 cut(s) 82
PfeI GAWTC 4 cut(s) 226, 247, 355, 412
PleI GAGTC 1 cut(s) 934
PpsI GAGTC 1 cut(s) 934
PscI ACATGT 1 cut(s) 998
PshBI ATTAAT 1 cut(s) 27
PsiI TTATAA 1 cut(s) 995
Psp124BI GAGCTC 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 389
PstNI CAGNNNCTG 1 cut(s) 322
RsaI GTAC 5 cut(s) 403, 634, 643, 846, 928
RsaNI GTAC 5 cut(s) 402, 633, 642, 845, 927
RseI CAYNNNNRTG 1 cut(s) 423
SacI GAGCTC 1 cut(s) 52
SaqAI TTAA 5 cut(s) 27, 396, 432, 440, 455
Sau3AI GATC 1 cut(s) 671
ScaI AGTACT 2 cut(s) 634, 643
SchI GAGTC 1 cut(s) 934
SduI GDGCHC 1 cut(s) 52
SfaNI GCATC 2 cut(s) 415, 508
SfuI TTCGAA 2 cut(s) 728, 811
SmiMI CAYNNNNRTG 1 cut(s) 423
Sse9I AATT 5 cut(s) 98, 115, 441, 505, 598
SspMI CTAG 2 cut(s) 639, 831
SstI GAGCTC 1 cut(s) 52
TaaI ACNGT 2 cut(s) 70, 498
TaiI ACGT 1 cut(s) 299
TaqI TCGA 5 cut(s) 21, 52, 245, 728, 811
TasI AATT 5 cut(s) 98, 115, 441, 505, 598
TatI WGTACW 3 cut(s) 632, 641, 926
TfiI GAWTC 4 cut(s) 226, 247, 355, 412
Tru1I TTAA 5 cut(s) 27, 396, 432, 440, 455
Tru9I TTAA 5 cut(s) 27, 396, 432, 440, 455
TscAI CASTG 1 cut(s) 75
TspDTI ATGAA 7 cut(s) 219, 480, 495, 591, 611, 771, 873
TspRI CASTG 1 cut(s) 75
VspI ATTAAT 1 cut(s) 27
XapI RAATTY 2 cut(s) 98, 505
XceI RCATGY 1 cut(s) 1002
XcmI CCANNNNNNNNNTGG 1 cut(s) 951
XmiI GTMKAC 1 cut(s) 361
XspI CTAG 2 cut(s) 639, 831
ZraI GACGTC 1 cut(s) 297
ZrmI AGTACT 2 cut(s) 634, 643
Zsp2I ATGCAT 2 cut(s) 523, 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.