Rroxscaffold_2G00107510

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000278
Physical Location & Seq
Reverse (-)
31479314 .. 31480226
913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00107510.1

Sequence Viewer

Length: 801 bp
ATGGTGGACGAGAAAAAGAAAGGGACTGAGTCTTCAGGTTCTTCGCGTTGGTCGACTTCCAGGCCATCGATTGGTAATGCCAAATTTGAAGTTGAAAAGTTTAATGGCACCAACAATTTTGGCATGTGGCAGTGTGAGATGATGGATGTCTTGTGTCAACAAGAATTGGATATAGCTTTGGAAGATAAACCTGCAGACATAGATGATGTAGAGTGGGCGAGAATTAACAAGTGGGCTTGTGGTTCTACCAGAATGTGTCTTGCTAAAGATCAGAAATTCTTTGTCATGAAAGAAACTTCTGCAAAAGCATTGTGGAAGAAATTAGAAGACCAATATATGATCAAGAGTGCTGAAAATCGGTTTCACTCGAAGAGGTGGCTTTTTCGATTTAATTATCGACGGGGTGTTTACGTGTCCGAACACATCGGTGATTTCAATAAGATACTTGCAGATTTGGCTAATTTGGATTTGAAAATTAGTGATGAGGATAAAGCGTTGTGTTTGCTAAATTCTCTTCCCGATGAGTATGAGCATTTGATTACAACTTTGTTGCATGGAAAGAATGATGTGAAATTTGATGATGTATGTAATTCATTGATAAATAATGAGTGCAGAAAGAAAGAGAAACAACTTCAGAATGTTTCAGGTGAAGCACTTGTAGTAAGGGGCAGATCGATGAGAGAAAACCTACTAGAAAAAGAGGTAAATCTCGTTCCAAGTCAAGAAGTAAATTTCCTGCAAAAGATGAGTGTGCTTTTTGTCGCAACAAAGGTCATTGGAAGAAAGATTGTCCTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203
Pfam Domains
Protein Families
ANAPC4_WD40 WD40

Protein Analysis

266

Amino Acids

30.69

Weight (kDa)

7.55

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 68 - 209 1.2e-24 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 107
AccB7I CCANNNNNTGG 1 cut(s) 71
AccI GTMKAC 1 cut(s) 53
AccII CGCG 1 cut(s) 46
AcsI RAATTY 5 cut(s) 83, 275, 508, 572, 730
AcuI CTGAAG 2 cut(s) 18, 617
AfiI CCNNNNNNNGG 1 cut(s) 71
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 4 cut(s) 89, 95, 436, 472
AjnI CCWGG 1 cut(s) 59
AleI CACNNNNGTG 1 cut(s) 426
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
AoxI GGCC 1 cut(s) 62
ApoI RAATTY 5 cut(s) 83, 275, 508, 572, 730
AsuHPI GGTGA 2 cut(s) 440, 659
BanI GGYRCC 1 cut(s) 107
BbsI GAAGAC 2 cut(s) 24, 333
BccI CCATC 2 cut(s) 73, 136
BciT130I CCWGG 1 cut(s) 61
BclI TGATCA 1 cut(s) 339
BfaI CTAG 1 cut(s) 692
BfmI CTRYAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 61
BpiI GAAGAC 2 cut(s) 24, 333
Bsa29I ATCGAT 2 cut(s) 68, 674
BsaAI YACGTR 1 cut(s) 412
Bsc4I CCNNNNNNNGG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 61
BseCI ATCGAT 2 cut(s) 68, 674
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 18
BsgI GTGCAG 1 cut(s) 631
Bsh1236I CGCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 64
BshNI GGYRCC 1 cut(s) 107
BshVI ATCGAT 2 cut(s) 68, 674
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 1 cut(s) 64
Bsp143I GATC 3 cut(s) 268, 339, 671
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 19
BspDI ATCGAT 2 cut(s) 68, 674
BspFNI CGCG 1 cut(s) 46
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 109
BspMAI CTGCAG 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 107
BssMI GATC 3 cut(s) 268, 339, 671
Bst2UI CCWGG 1 cut(s) 61
Bst6I CTCTTC 2 cut(s) 365, 519
BstBAI YACGTR 1 cut(s) 412
BstDEI CTNAG 2 cut(s) 27, 794
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 46
BstKTI GATC 3 cut(s) 271, 342, 674
BstMBI GATC 3 cut(s) 268, 339, 671
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNI CCWGG 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 192
BstUI CGCG 1 cut(s) 46
BstV2I GAAGAC 2 cut(s) 24, 333
Bsu15I ATCGAT 2 cut(s) 68, 674
BsuRI GGCC 1 cut(s) 64
BsuTUI ATCGAT 2 cut(s) 68, 674
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 137
BveI ACCTGC 1 cut(s) 199
CciI TCATGA 1 cut(s) 285
ClaI ATCGAT 2 cut(s) 68, 674
CviAII CATG 3 cut(s) 124, 286, 554
CviJI RGCY 5 cut(s) 64, 176, 236, 379, 458
CviKI_1 RGCY 5 cut(s) 64, 176, 236, 379, 458
DdeI CTNAG 2 cut(s) 27, 794
DpnI GATC 3 cut(s) 270, 341, 673
DpnII GATC 3 cut(s) 268, 339, 671
Eam1104I CTCTTC 2 cut(s) 365, 519
EarI CTCTTC 2 cut(s) 365, 519
Eco57I CTGAAG 2 cut(s) 18, 617
EcoRII CCWGG 1 cut(s) 59
FaeI CATG 3 cut(s) 127, 289, 557
FaiI YATR 9 cut(s) 125, 173, 200, 287, 336, 338, 528, 555, 586
FaqI GGGAC 1 cut(s) 37
FatI CATG 3 cut(s) 123, 285, 553
FbaI TGATCA 1 cut(s) 339
FblI GTMKAC 1 cut(s) 53
FokI GGATG 1 cut(s) 158
FspBI CTAG 1 cut(s) 692
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 3 cut(s) 127, 289, 557
HincII GTYRAC 2 cut(s) 54, 158
HindII GTYRAC 2 cut(s) 54, 158
HinfI GANTC 1 cut(s) 29
HphI GGTGA 2 cut(s) 440, 659
Hpy166II GTNNAC 4 cut(s) 7, 54, 158, 409
Hpy188I TCNGA 3 cut(s) 273, 418, 636
Hpy188III TCNNGA 4 cut(s) 286, 343, 518, 722
Hpy8I GTNNAC 4 cut(s) 7, 54, 158, 409
Hpy99I CGWCG 1 cut(s) 402
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 6 cut(s) 194, 302, 449, 553, 612, 739
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 2 cut(s) 27, 794
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 3 cut(s) 127, 289, 557
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 3 cut(s) 268, 339, 671
LpnPI CCDG 7 cut(s) 21, 46, 73, 204, 262, 630, 749
MaeI CTAG 1 cut(s) 692
MaeII ACGT 1 cut(s) 411
MalI GATC 3 cut(s) 270, 341, 673
MboI GATC 3 cut(s) 268, 339, 671
MboII GAAGA 8 cut(s) 24, 33, 194, 328, 338, 382, 506, 792
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 3 cut(s) 366, 478, 694
MseI TTAA 3 cut(s) 102, 225, 390
MslI CAYNNNNRTG 1 cut(s) 426
MspR9I CCNGG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 61
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 455
NdeII GATC 3 cut(s) 268, 339, 671
NlaIII CATG 3 cut(s) 127, 289, 557
NlaIV GGNNCC 1 cut(s) 109
NspI RCATGY 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 426
PagI TCATGA 1 cut(s) 285
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PflFI GACNNNGTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 71
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Ppu21I YACGTR 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 109
PsrI GAACNNNNNNTAC 2 cut(s) 696, 728
PstI CTGCAG 1 cut(s) 196
PsyI GACNNNGTC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 426
SalI GTCGAC 1 cut(s) 52
SaqAI TTAA 3 cut(s) 102, 225, 390
Sau3AI GATC 3 cut(s) 268, 339, 671
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 61
SetI ASST 9 cut(s) 40, 178, 193, 377, 414, 649, 690, 705, 774
SfcI CTRYAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 426
SspMI CTAG 1 cut(s) 692
StyD4I CCNGG 1 cut(s) 59
TaiI ACGT 1 cut(s) 414
TaqI TCGA 6 cut(s) 53, 68, 368, 385, 397, 674
Tru1I TTAA 3 cut(s) 102, 225, 390
Tru9I TTAA 3 cut(s) 102, 225, 390
TscAI CASTG 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 302, 582
TspRI CASTG 1 cut(s) 137
Tth111I GACNNNGTC 1 cut(s) 28
Van91I CCANNNNNTGG 1 cut(s) 71
XapI RAATTY 5 cut(s) 83, 275, 508, 572, 730
XceI RCATGY 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 53
XspI CTAG 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.