RchiOBHm_Chr6g0262311

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000278
Physical Location & Seq
Forward (+)
17006119 .. 17006578
460 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23523

Sequence Viewer

Length: 195 bp
ATGGATGAAACAAAAAGCACAATAATCAAACTCATCCACCCGAAGTGGGTGACGTGGAAGCAAAGAATGGAGGATATGCTTTATTGCATGGACTTGTATGAGCCTATTGAAGGTGTGGCTGCCAAATCAAACAATATGACAGTGGCAAAAGTTGAACCCGAAAGCCATTTGCATGATAAGACAATGGGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.51

Weight (kDa)

6.26

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 46, 110
AgsI TTSAA 2 cut(s) 110, 155
AjiI CACGTC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 61
BbvI GCAGC 1 cut(s) 106
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BmgBI CACGTC 1 cut(s) 54
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 110
BseGI GGATG 2 cut(s) 10, 33
BseLI CCNNNNNNNGG 2 cut(s) 46, 110
BseXI GCAGC 1 cut(s) 106
BslI CCNNNNNNNGG 2 cut(s) 46, 110
Bst4CI ACNGT 1 cut(s) 142
BstENI CCTNNNNNAGG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 10, 33
BstV1I GCAGC 1 cut(s) 106
BtrI CACGTC 1 cut(s) 54
BtsCI GGATG 2 cut(s) 10, 33
BtsIMutI CAGTG 1 cut(s) 147
CviAII CATG 2 cut(s) 88, 173
CviJI RGCY 3 cut(s) 103, 119, 165
CviKI_1 RGCY 3 cut(s) 103, 119, 165
EcoNI CCTNNNNNAGG 1 cut(s) 108
FaeI CATG 2 cut(s) 91, 176
FaiI YATR 5 cut(s) 77, 89, 99, 137, 174
FatI CATG 2 cut(s) 87, 172
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 17, 20
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
Hin1II CATG 2 cut(s) 91, 176
HphI GGTGA 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 87, 172
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 2 cut(s) 91, 176
Lsp1109I GCAGC 1 cut(s) 106
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 49
MnlI CCTC 1 cut(s) 64
MslI CAYNNNNRTG 1 cut(s) 171
NlaIII CATG 2 cut(s) 91, 176
NmuCI GTSAC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 171
SatI GCNGC 1 cut(s) 120
SetI ASST 2 cut(s) 56, 115
SgeI CNNG 6 cut(s) 52, 66, 100, 106, 170, 185
SmiMI CAYNNNNRTG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 56
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 21
TspRI CASTG 1 cut(s) 147
XagI CCTNNNNNAGG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.