Rroxscaffold_3G00255410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000278
Physical Location & Seq
Forward (+)
49664933 .. 49667048
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255410.1

Sequence Viewer

Length: 264 bp
ATGGCAAAGGAGAGTGAAAGACATCCTAGTTCAACGGGGCTTAGTAAAGTGTTGAAGGGGAAGGATGAGAAACCGGAGAAGACAACGGATAATGCAAGGAAAACTGTCGGGGATTTAGTGATCATAACGGGTCTAAATCCAGAGGCGGGGATGCTACAAGCCAGAGACGTCGTTGACAAGTTTCCAAGTTCAGATGATGGTGAGAAGGTAAATCCTGCTAGGGAAGAGGTCGAGTCGAGGTTCCTCTTCAGAGCCAACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.63

Weight (kDa)

6.59

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
AciI CCGC 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 232
AcyI GRCGYC 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 2 cut(s) 33, 55
Alw26I GTCTC 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 86
BccI CCATC 1 cut(s) 191
BclI TGATCA 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 2 cut(s) 27, 219
BmiI GGNNCC 1 cut(s) 242
BmsI GCATC 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 146
BseGI GGATG 3 cut(s) 22, 70, 156
BseLI CCNNNNNNNGG 1 cut(s) 146
BsiSI CCGG 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 159
BsmBI CGTCTC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 242
BssMI GATC 1 cut(s) 120
BssNI GRCGYC 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 219, 251
BstACI GRCGYC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 41
BstF5I GGATG 3 cut(s) 22, 70, 156
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 86
BtsCI GGATG 3 cut(s) 22, 70, 156
CviJI RGCY 3 cut(s) 40, 161, 254
CviKI_1 RGCY 3 cut(s) 40, 161, 254
DdeI CTNAG 1 cut(s) 41
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 219, 251
EarI CTCTTC 2 cut(s) 219, 251
Eco57I CTGAAG 1 cut(s) 232
Esp3I CGTCTC 1 cut(s) 159
FaiI YATR 1 cut(s) 125
FauI CCCGC 1 cut(s) 139
FbaI TGATCA 1 cut(s) 120
FokI GGATG 3 cut(s) 9, 77, 163
FspBI CTAG 2 cut(s) 27, 219
HapII CCGG 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 74
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 193, 251
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 3 cut(s) 49, 55, 199
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 168
Hsp92I GRCGYC 1 cut(s) 168
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 1 cut(s) 120
LpnPI CCDG 5 cut(s) 87, 153, 175, 228, 244
LweI GCATC 1 cut(s) 141
MaeI CTAG 2 cut(s) 27, 219
MaeII ACGT 1 cut(s) 168
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 3 cut(s) 91, 236, 238
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 4 cut(s) 136, 220, 231, 254
MspI CCGG 1 cut(s) 74
NdeII GATC 1 cut(s) 120
NlaIV GGNNCC 1 cut(s) 242
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 242
Sau3AI GATC 1 cut(s) 120
SchI GAGTC 1 cut(s) 242
SetI ASST 5 cut(s) 171, 210, 231, 242, 263
SfaNI GCATC 1 cut(s) 141
SsiI CCGC 1 cut(s) 146
SspMI CTAG 2 cut(s) 27, 219
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 171
TaqI TCGA 2 cut(s) 231, 236
TspGWI ACGGA 1 cut(s) 101
XspI CTAG 2 cut(s) 27, 219
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.