FvH4_7g14352

glutaminyl-tRNA aminoacylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000278
Physical Location & Seq
Reverse (-)
12712494 .. 12713090
597 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14352.t1

Sequence Viewer

Length: 597 bp
ATGTTCAATGAAGAAGCAAGGAGGAAGGAGCAAGGAATATCGACCGAGTCGGAAGCCCTCGTCACCGATAACCGTGGAAGCAGTCGAAAGTTCCACAACCGAGGCAAAGCAAAGGACTGGTCAAGGGGCAAGTCTAGCCCAAAGAAGAACATAAGATGTTATCATTGTGGCAATAAAGGTCACATGAGGAATGAGTGCAGAAGGCTCAAGGAAGAGCAAGCCGAGAAAGGTGGTGCCAAAGATACCGCCGCTACTACCTCATATGGAGACGAGGTAATCATCATTTGTGGAGATGGTCATGTTAATTTGACATCTCAAGATACATGTTGGATCGTCGATTCCGGCGCATCGTTTCATGTAACCTCACGAAGGGAGTTCTTCACATCCTACAATACCGGAAATTTCGGTAATGTTAGAATGGGAAATGATAAGCTGTCCAAGATCGTGGGAAGAGGAGATATTTCCCTTGAAACCAACACAGGTTGCTGCCTGGTTCTCAAGGATGTGAGACATGTTCCAGACATGCGTCTCAATTTGATCTCCACTGGGTTGCTTGATGATGAAGGCTACACAAATGTCTTTGGTGATGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

199

Amino Acids

22.02

Weight (kDa)

8.66

Isoelectric Point (pI)

29.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 110 - 190 5.5e-27 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AciI CCGC 2 cut(s) 246, 249
AclWI GGATC 1 cut(s) 338
AcsI RAATTY 1 cut(s) 400
AfiI CCNNNNNNNGG 1 cut(s) 369
AflIII ACRYGT 2 cut(s) 323, 511
AgsI TTSAA 2 cut(s) 7, 470
AjnI CCWGG 1 cut(s) 489
AluBI AGCT 1 cut(s) 433
AluI AGCT 1 cut(s) 433
Alw26I GTCTC 3 cut(s) 261, 502, 533
AlwI GGATC 1 cut(s) 338
ApeKI GCWGC 1 cut(s) 486
ApoI RAATTY 1 cut(s) 400
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AspLEI GCGC 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 55, 596
BanI GGYRCC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 473
BccI CCATC 2 cut(s) 287, 581
BciT130I CCWGG 1 cut(s) 491
BcoDI GTCTC 3 cut(s) 261, 502, 533
BfaI CTAG 1 cut(s) 135
BisI GCNGC 2 cut(s) 249, 487
BlsI GCNGC 2 cut(s) 250, 488
Bme1390I CCNGG 1 cut(s) 491
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 491
BmrI ACTGGG 1 cut(s) 555
BmsI GCATC 1 cut(s) 356
BmuI ACTGGG 1 cut(s) 555
BoxI GACNNNNGTC 1 cut(s) 525
BpuEI CTTGAG 3 cut(s) 191, 300, 482
BsaJI CCNNGG 2 cut(s) 73, 100
BsaWI WCCGGW 1 cut(s) 395
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 369
Bse1I ACTGG 2 cut(s) 122, 550
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 2 cut(s) 73, 100
BseGI GGATG 2 cut(s) 383, 508
BseLI CCNNNNNNNGG 1 cut(s) 369
BseNI ACTGG 2 cut(s) 122, 550
BseRI GAGGAG 1 cut(s) 468
BseXI GCAGC 1 cut(s) 473
BsgI GTGCAG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 233
BsiEI CGRYCG 1 cut(s) 45
BsiSI CCGG 2 cut(s) 342, 396
BslI CCNNNNNNNGG 1 cut(s) 369
BsmAI GTCTC 3 cut(s) 261, 502, 533
BsmBI CGTCTC 2 cut(s) 261, 533
Bsp143I GATC 3 cut(s) 330, 441, 537
BspACI CCGC 2 cut(s) 246, 249
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 1 cut(s) 338
BspQI GCTCTTC 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 233
BsrI ACTGG 2 cut(s) 122, 550
BssECI CCNNGG 2 cut(s) 73, 100
BssMI GATC 3 cut(s) 330, 441, 537
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 2 cut(s) 207, 445
BstC8I GCNNGC 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 73
BstENI CCTNNNNNAGG 1 cut(s) 367
BstF5I GGATG 2 cut(s) 383, 508
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 3 cut(s) 333, 444, 540
BstMAI GTCTC 3 cut(s) 261, 502, 533
BstMBI GATC 3 cut(s) 330, 441, 537
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 491
BstNSI RCATGY 3 cut(s) 327, 515, 526
BstPAI GACNNNNGTC 1 cut(s) 525
BstSCI CCNGG 1 cut(s) 489
BstV1I GCAGC 1 cut(s) 473
BstXI CCANNNNNNTGG 1 cut(s) 445
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 2 cut(s) 383, 508
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 1 cut(s) 219
CfoI GCGC 1 cut(s) 347
CseI GACGC 1 cut(s) 515
CviAII CATG 6 cut(s) 184, 299, 324, 356, 512, 523
CviJI RGCY 6 cut(s) 56, 138, 205, 221, 433, 567
CviKI_1 RGCY 6 cut(s) 56, 138, 205, 221, 433, 567
DpnI GATC 3 cut(s) 332, 443, 539
DpnII GATC 3 cut(s) 330, 441, 537
Eam1104I CTCTTC 2 cut(s) 207, 445
EarI CTCTTC 2 cut(s) 207, 445
EcoNI CCTNNNNNAGG 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 489
Esp3I CGTCTC 2 cut(s) 261, 533
FaeI CATG 6 cut(s) 187, 302, 327, 359, 515, 526
FaiI YATR 9 cut(s) 152, 185, 262, 264, 300, 325, 357, 513, 524
FatI CATG 6 cut(s) 183, 298, 323, 355, 511, 522
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 249, 487
FokI GGATG 2 cut(s) 370, 515
Fsp4HI GCNGC 2 cut(s) 249, 487
FspBI CTAG 1 cut(s) 135
GlaI GCGC 1 cut(s) 346
GluI GCNGC 2 cut(s) 249, 487
HapII CCGG 2 cut(s) 342, 396
HgaI GACGC 1 cut(s) 515
HhaI GCGC 1 cut(s) 347
Hin1II CATG 6 cut(s) 187, 302, 327, 359, 515, 526
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HinfI GANTC 2 cut(s) 47, 338
HpaII CCGG 2 cut(s) 342, 396
HphI GGTGA 2 cut(s) 55, 596
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 3 cut(s) 317, 366, 518
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 4 cut(s) 19, 195, 363, 557
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
Hsp92II CATG 6 cut(s) 187, 302, 327, 359, 515, 526
HspAI GCGC 1 cut(s) 345
Kzo9I GATC 3 cut(s) 330, 441, 537
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 8 cut(s) 103, 355, 409, 465, 476, 503, 531, 531
Lsp1109I GCAGC 1 cut(s) 473
LweI GCATC 1 cut(s) 356
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 3 cut(s) 61, 179, 358
MalI GATC 3 cut(s) 332, 443, 539
MboI GATC 3 cut(s) 330, 441, 537
MboII GAAGA 5 cut(s) 23, 157, 224, 370, 462
MluCI AATT 3 cut(s) 304, 400, 532
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 2 cut(s) 30, 308
MnlI CCTC 8 cut(s) 15, 68, 95, 180, 265, 268, 373, 446
MseI TTAA 1 cut(s) 303
MspI CCGG 2 cut(s) 342, 396
MspR9I CCNGG 1 cut(s) 491
MvaI CCWGG 1 cut(s) 491
MwoI GCNNNNNNNGC 1 cut(s) 135
NdeI CATATG 1 cut(s) 262
NdeII GATC 3 cut(s) 330, 441, 537
NlaIII CATG 6 cut(s) 187, 302, 327, 359, 515, 526
NlaIV GGNNCC 1 cut(s) 235
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 2 cut(s) 61, 179
NspI RCATGY 3 cut(s) 327, 515, 526
PciI ACATGT 2 cut(s) 323, 511
PciSI GCTCTTC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 338
PflFI GACNNNGTC 1 cut(s) 46
PkrI GCNGC 2 cut(s) 250, 488
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PscI ACATGT 2 cut(s) 323, 511
PshAI GACNNNNGTC 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 489
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 1 cut(s) 235
PsyI GACNNNGTC 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 2 cut(s) 249, 487
Sau3AI GATC 3 cut(s) 330, 441, 537
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 491
SetI ASST 7 cut(s) 181, 232, 260, 276, 365, 435, 484
SfaNI GCATC 1 cut(s) 356
SmlI CTYRAG 3 cut(s) 206, 315, 497
SmoI CTYRAG 3 cut(s) 206, 315, 497
Sse9I AATT 3 cut(s) 304, 400, 532
SsiI CCGC 2 cut(s) 246, 249
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 3 cut(s) 41, 85, 336
TaqII GACCGA 1 cut(s) 59
TasI AATT 3 cut(s) 304, 400, 532
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 2 cut(s) 61, 179
TseI GCWGC 1 cut(s) 486
Tsp45I GTSAC 2 cut(s) 61, 179
TspDTI ATGAA 3 cut(s) 24, 344, 576
TspRI CASTG 1 cut(s) 550
Tth111I GACNNNGTC 1 cut(s) 46
XagI CCTNNNNNAGG 1 cut(s) 367
XapI RAATTY 1 cut(s) 400
XceI RCATGY 3 cut(s) 327, 515, 526
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.