Cell division cycle
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 2 - 121 | 5e-31 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 342 |
| AclI | AACGTT | 1 cut(s) | 127 |
| AclWI | GGATC | 1 cut(s) | 246 |
| AcsI | RAATTY | 3 cut(s) | 283, 349, 382 |
| AcuI | CTGAAG | 1 cut(s) | 171 |
| AfaI | GTAC | 2 cut(s) | 134, 157 |
| AflII | CTTAAG | 1 cut(s) | 68 |
| AgsI | TTSAA | 6 cut(s) | 121, 167, 208, 349, 354, 388 |
| AluBI | AGCT | 1 cut(s) | 56 |
| AluI | AGCT | 1 cut(s) | 56 |
| AlwI | GGATC | 1 cut(s) | 246 |
| ApeKI | GCWGC | 1 cut(s) | 53 |
| ApoI | RAATTY | 3 cut(s) | 283, 349, 382 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 24 |
| AsuHPI | GGTGA | 1 cut(s) | 94 |
| BbvI | GCAGC | 1 cut(s) | 65 |
| BfmI | CTRYAG | 1 cut(s) | 51 |
| BfrI | CTTAAG | 1 cut(s) | 68 |
| BisI | GCNGC | 2 cut(s) | 54, 342 |
| BlsI | GCNGC | 2 cut(s) | 55, 343 |
| BsaBI | GATNNNNATC | 1 cut(s) | 237 |
| Bse8I | GATNNNNATC | 1 cut(s) | 237 |
| BseJI | GATNNNNATC | 1 cut(s) | 237 |
| BseMII | CTCAG | 1 cut(s) | 393 |
| BseXI | GCAGC | 1 cut(s) | 65 |
| Bsp1407I | TGTACA | 1 cut(s) | 132 |
| Bsp143I | GATC | 1 cut(s) | 238 |
| BspACI | CCGC | 1 cut(s) | 342 |
| BspCNI | CTCAG | 1 cut(s) | 394 |
| BspMAI | CTGCAG | 1 cut(s) | 55 |
| BspPI | GGATC | 1 cut(s) | 246 |
| BspTI | CTTAAG | 1 cut(s) | 68 |
| BsrGI | TGTACA | 1 cut(s) | 132 |
| BssMI | GATC | 1 cut(s) | 238 |
| BstAFI | CTTAAG | 1 cut(s) | 68 |
| BstAUI | TGTACA | 1 cut(s) | 132 |
| BstDEI | CTNAG | 1 cut(s) | 402 |
| BstKTI | GATC | 1 cut(s) | 241 |
| BstMBI | GATC | 1 cut(s) | 238 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 413 |
| BstSFI | CTRYAG | 1 cut(s) | 51 |
| BstV1I | GCAGC | 1 cut(s) | 65 |
| Csp6I | GTAC | 2 cut(s) | 133, 156 |
| CviJI | RGCY | 4 cut(s) | 56, 67, 341, 407 |
| CviKI_1 | RGCY | 4 cut(s) | 56, 67, 341, 407 |
| CviQI | GTAC | 2 cut(s) | 133, 156 |
| DdeI | CTNAG | 1 cut(s) | 402 |
| DpnI | GATC | 1 cut(s) | 240 |
| DpnII | GATC | 1 cut(s) | 238 |
| Eco57I | CTGAAG | 1 cut(s) | 171 |
| EcoRI | GAATTC | 1 cut(s) | 349 |
| Fnu4HI | GCNGC | 2 cut(s) | 54, 342 |
| Fsp4HI | GCNGC | 2 cut(s) | 54, 342 |
| GluI | GCNGC | 2 cut(s) | 54, 342 |
| HinfI | GANTC | 2 cut(s) | 314, 392 |
| HphI | GGTGA | 1 cut(s) | 94 |
| Hpy166II | GTNNAC | 1 cut(s) | 135 |
| Hpy188I | TCNGA | 2 cut(s) | 16, 403 |
| Hpy188III | TCNNGA | 4 cut(s) | 29, 176, 354, 444 |
| Hpy8I | GTNNAC | 1 cut(s) | 135 |
| HpyAV | CCTTC | 3 cut(s) | 146, 282, 441 |
| HpyCH4IV | ACGT | 1 cut(s) | 127 |
| HpyCH4V | TGCA | 1 cut(s) | 53 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 413 |
| HpyF3I | CTNAG | 1 cut(s) | 402 |
| HpySE526I | ACGT | 1 cut(s) | 127 |
| Kzo9I | GATC | 1 cut(s) | 238 |
| LpnPI | CCDG | 2 cut(s) | 42, 429 |
| Lsp1109I | GCAGC | 1 cut(s) | 65 |
| MaeII | ACGT | 1 cut(s) | 127 |
| MalI | GATC | 1 cut(s) | 240 |
| MboI | GATC | 1 cut(s) | 238 |
| MboII | GAAGA | 1 cut(s) | 17 |
| MluCI | AATT | 4 cut(s) | 225, 283, 349, 382 |
| MmeI | TCCRAC | 1 cut(s) | 54 |
| MnlI | CCTC | 6 cut(s) | 25, 110, 229, 279, 397, 413 |
| MroXI | GAANNNNTTC | 1 cut(s) | 24 |
| MseI | TTAA | 3 cut(s) | 69, 186, 362 |
| MslI | CAYNNNNRTG | 1 cut(s) | 177 |
| MspA1I | CMGCKG | 1 cut(s) | 56 |
| MspCI | CTTAAG | 1 cut(s) | 68 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 413 |
| NdeII | GATC | 1 cut(s) | 238 |
| PdmI | GAANNNNTTC | 1 cut(s) | 24 |
| PfeI | GAWTC | 2 cut(s) | 314, 392 |
| PkrI | GCNGC | 2 cut(s) | 55, 343 |
| Psp1406I | AACGTT | 1 cut(s) | 127 |
| PstI | CTGCAG | 1 cut(s) | 55 |
| PvuII | CAGCTG | 1 cut(s) | 56 |
| RsaI | GTAC | 2 cut(s) | 134, 157 |
| RsaNI | GTAC | 2 cut(s) | 133, 156 |
| RseI | CAYNNNNRTG | 1 cut(s) | 177 |
| SaqAI | TTAA | 3 cut(s) | 69, 186, 362 |
| SatI | GCNGC | 2 cut(s) | 54, 342 |
| Sau3AI | GATC | 1 cut(s) | 238 |
| SetI | ASST | 6 cut(s) | 36, 58, 130, 157, 195, 271 |
| SfcI | CTRYAG | 1 cut(s) | 51 |
| SgeI | CNNG | 6 cut(s) | 41, 69, 188, 366, 429, 456 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 177 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| Sse9I | AATT | 4 cut(s) | 225, 283, 349, 382 |
| SsiI | CCGC | 1 cut(s) | 342 |
| TaiI | ACGT | 1 cut(s) | 130 |
| TaqI | TCGA | 1 cut(s) | 291 |
| TasI | AATT | 4 cut(s) | 225, 283, 349, 382 |
| TatI | WGTACW | 1 cut(s) | 132 |
| TauI | GCSGC | 1 cut(s) | 344 |
| TfiI | GAWTC | 2 cut(s) | 314, 392 |
| Tru1I | TTAA | 3 cut(s) | 69, 186, 362 |
| Tru9I | TTAA | 3 cut(s) | 69, 186, 362 |
| TseI | GCWGC | 1 cut(s) | 53 |
| TspDTI | ATGAA | 2 cut(s) | 33, 57 |
| TspGWI | ACGGA | 1 cut(s) | 131 |
| Vha464I | CTTAAG | 1 cut(s) | 68 |
| XapI | RAATTY | 3 cut(s) | 283, 349, 382 |
| XmnI | GAANNNNTTC | 1 cut(s) | 24 |