FvH4_2g26380

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000278
Physical Location & Seq
Forward (+)
21198962 .. 21200252
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26380.t1

Sequence Viewer

Length: 825 bp
ATGGCGCTTGACAAGGCAAACACATGCTACGACGTGAGGTCCATTATCAAACAGTTCAATGGCAAAGATAGTTTCATGTTGTGGCAGCGGAAGATGAAGAACATCCTAATCCAACAAGATCTGGATGAGACTATTCTCACGGTAGAGAAGAAGCCCACTGGTATCACAGATGAGGAACGGAAAAAGATGGACAAGAAGGTAAAGAGCTTCATAGAGCTCCATCTTGCCGACAACGTGATTCTTAGAGTTGGAGAGGATATGAATGCTAAGGAGACATGGGAAAAGCTCGAATGGAAGAAGGTGGGGGATCTACTGGAACATCTGAGAAAATTTCAGAACTGTGTTGTAGATTTATCAATGATGGGTGCAAAGTATGAAGATGATGACAAAGCACTCTTGCTGATGCGTTCTTTACCGCCTTCGTTTAAATACTTCAAGAGCAAGATCATGTCCGGTGGGAGTACTCTACTGTTTGATGAGGTTATTGACGCTCTTCAGTCTTATGTCAAGATGAATGAGAACTCCGGTTGCGCACAACTCAAAATATCACAAGATATGGATCAGAAAAAGCCTGAGGTTGGGGTGGTTGTGTCTCAGAGCAAGGCACAGACGAATGTATCTAGTGAAGGAGAAAACAAAATGCGAGCAGATCATCTTAGTGGATGTTCAACCAATTTCACTCAAAGTTACAAGGCAGAAGAGTTTGGGGGCAAGCACATTGGTGCTTCCTTATTCAGTCCTAAGGAAGATGATGAGTTTGTTGACTTGGAGCAAGGGAATGGCGCTCAACATCAGACTCAAGTGCAGCTCAAGGAGTCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

275

Amino Acids

31.12

Weight (kDa)

5.68

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 97 - 167 2e-12 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 532
AciI CCGC 2 cut(s) 88, 416
AclWI GGATC 2 cut(s) 315, 567
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 479
AfaI GTAC 1 cut(s) 463
AfiI CCNNNNNNNGG 1 cut(s) 578
AgsI TTSAA 3 cut(s) 58, 436, 669
AhdI GACNNNNNGTC 1 cut(s) 37
AjiI CACGTC 1 cut(s) 34
AleI CACNNNNGTG 1 cut(s) 720
AluBI AGCT 4 cut(s) 207, 217, 286, 808
AluI AGCT 4 cut(s) 207, 217, 286, 808
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 3 cut(s) 122, 266, 597
AlwI GGATC 2 cut(s) 315, 567
ApeKI GCWGC 2 cut(s) 85, 805
ApoI RAATTY 1 cut(s) 329
AspLEI GCGC 3 cut(s) 7, 533, 785
AspS9I GGNCC 1 cut(s) 39
AvaII GGWCC 1 cut(s) 39
AxyI CCTNAGG 2 cut(s) 573, 741
BaeI ACNNNNGTAYC 2 cut(s) 600, 633
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 97, 817
BccI CCATC 3 cut(s) 181, 228, 355
BcoDI GTCTC 3 cut(s) 122, 266, 597
BfaI CTAG 1 cut(s) 621
BfoI RGCGCY 2 cut(s) 8, 786
BglII AGATCT 1 cut(s) 118
BisI GCNGC 2 cut(s) 86, 806
BlsI GCNGC 2 cut(s) 87, 807
BmcAI AGTACT 1 cut(s) 463
Bme18I GGWCC 1 cut(s) 39
BmeRI GACNNNNNGTC 1 cut(s) 37
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 39
BmsI GCATC 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 267
BpuEI CTTGAG 2 cut(s) 783, 794
BsaBI GATNNNNATC 1 cut(s) 558
BsaWI WCCGGW 2 cut(s) 452, 524
BsaXI ACNNNNNCTCC 1 cut(s) 806
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse1I ACTGG 2 cut(s) 163, 318
Bse21I CCTNAGG 2 cut(s) 573, 741
Bse8I GATNNNNATC 1 cut(s) 558
BseGI GGATG 3 cut(s) 102, 130, 668
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 578
BseMII CTCAG 3 cut(s) 314, 564, 608
BseNI ACTGG 2 cut(s) 163, 318
BseXI GCAGC 2 cut(s) 97, 817
BsgI GTGCAG 1 cut(s) 824
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 2 cut(s) 453, 525
BslI CCNNNNNNNGG 1 cut(s) 578
BsmAI GTCTC 3 cut(s) 122, 266, 597
BsmI GAATGC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 5 cut(s) 118, 307, 444, 559, 649
BspACI CCGC 2 cut(s) 88, 416
BspCNI CTCAG 3 cut(s) 315, 565, 607
BspPI GGATC 2 cut(s) 315, 567
BspQI GCTCTTC 1 cut(s) 498
BsrI ACTGG 2 cut(s) 163, 318
BssMI GATC 5 cut(s) 118, 307, 444, 559, 649
Bst4CI ACNGT 4 cut(s) 54, 142, 341, 471
Bst6I CTCTTC 2 cut(s) 498, 693
BstC8I GCNNGC 2 cut(s) 645, 713
BstDEI CTNAG 7 cut(s) 242, 267, 323, 573, 594, 656, 741
BstF5I GGATG 3 cut(s) 102, 130, 668
BstH2I RGCGCY 2 cut(s) 8, 786
BstHHI GCGC 3 cut(s) 7, 533, 785
BstKTI GATC 5 cut(s) 121, 310, 447, 562, 652
BstMAI GTCTC 3 cut(s) 122, 266, 597
BstMBI GATC 5 cut(s) 118, 307, 444, 559, 649
BstNSI RCATGY 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 97, 817
BstX2I RGATCY 2 cut(s) 118, 307
BstYI RGATCY 2 cut(s) 118, 307
Bsu36I CCTNAGG 2 cut(s) 573, 741
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 3 cut(s) 102, 130, 668
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 645, 713
CfoI GCGC 3 cut(s) 7, 533, 785
Cfr13I GGNCC 1 cut(s) 39
CseI GACGC 1 cut(s) 497
Csp6I GTAC 1 cut(s) 462
CviAII CATG 4 cut(s) 24, 76, 276, 448
CviJI RGCY 6 cut(s) 154, 207, 217, 286, 571, 808
CviKI_1 RGCY 6 cut(s) 154, 207, 217, 286, 571, 808
CviQI GTAC 1 cut(s) 462
DdeI CTNAG 7 cut(s) 242, 267, 323, 573, 594, 656, 741
DpnI GATC 5 cut(s) 120, 309, 446, 561, 651
DpnII GATC 5 cut(s) 118, 307, 444, 559, 649
DraI TTTAAA 1 cut(s) 427
DriI GACNNNNNGTC 1 cut(s) 37
Eam1104I CTCTTC 2 cut(s) 498, 693
Eam1105I GACNNNNNGTC 1 cut(s) 37
EarI CTCTTC 2 cut(s) 498, 693
Ecl136II GAGCTC 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 479
Eco81I CCTNAGG 2 cut(s) 573, 741
EcoICRI GAGCTC 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 219
FaeI CATG 4 cut(s) 27, 79, 279, 451
FaiI YATR 9 cut(s) 25, 77, 212, 260, 277, 375, 449, 504, 557
FatI CATG 4 cut(s) 23, 75, 275, 447
Fnu4HI GCNGC 2 cut(s) 86, 806
FokI GGATG 3 cut(s) 89, 137, 675
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 2 cut(s) 86, 806
FspBI CTAG 1 cut(s) 621
FspI TGCGCA 1 cut(s) 532
GlaI GCGC 3 cut(s) 6, 532, 784
GluI GCNGC 2 cut(s) 86, 806
HaeII RGCGCY 2 cut(s) 8, 786
HapII CCGG 2 cut(s) 453, 525
HgaI GACGC 1 cut(s) 497
HhaI GCGC 3 cut(s) 7, 533, 785
Hin1II CATG 4 cut(s) 27, 79, 279, 451
Hin6I GCGC 3 cut(s) 5, 531, 783
HinP1I GCGC 3 cut(s) 5, 531, 783
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HinfI GANTC 3 cut(s) 238, 796, 815
HpaII CCGG 2 cut(s) 453, 525
Hpy166II GTNNAC 1 cut(s) 763
Hpy188I TCNGA 5 cut(s) 324, 336, 564, 597, 795
Hpy188III TCNNGA 3 cut(s) 122, 436, 508
Hpy8I GTNNAC 1 cut(s) 763
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 4 cut(s) 190, 292, 429, 620
HpyCH4III ACNGT 4 cut(s) 54, 142, 341, 471
HpyCH4IV ACGT 2 cut(s) 33, 234
HpyCH4V TGCA 2 cut(s) 368, 805
HpyF3I CTNAG 7 cut(s) 242, 267, 323, 573, 594, 656, 741
HpySE526I ACGT 2 cut(s) 33, 234
Hsp92II CATG 4 cut(s) 27, 79, 279, 451
HspAI GCGC 3 cut(s) 5, 531, 783
Kzo9I GATC 5 cut(s) 118, 307, 444, 559, 649
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 2 cut(s) 222, 769
LpnPI CCDG 6 cut(s) 107, 144, 299, 466, 538, 585
Lsp1109I GCAGC 2 cut(s) 97, 817
LweI GCATC 1 cut(s) 393
MaeI CTAG 1 cut(s) 621
MaeII ACGT 2 cut(s) 33, 234
MaeIII GTNAC 1 cut(s) 686
MalI GATC 5 cut(s) 120, 309, 446, 561, 651
MboI GATC 5 cut(s) 118, 307, 444, 559, 649
MboII GAAGA 8 cut(s) 103, 109, 160, 307, 389, 485, 710, 758
MflI RGATCY 2 cut(s) 118, 307
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 2 cut(s) 329, 673
MlyI GAGTC 2 cut(s) 790, 824
MmeI TCCRAC 2 cut(s) 136, 229
MnlI CCTC 5 cut(s) 30, 166, 247, 472, 568
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 2 cut(s) 657, 720
MspA1I CMGCKG 1 cut(s) 88
MspI CCGG 2 cut(s) 453, 525
Mva1269I GAATGC 1 cut(s) 268
NdeII GATC 5 cut(s) 118, 307, 444, 559, 649
NlaIII CATG 4 cut(s) 27, 79, 279, 451
NsbI TGCGCA 1 cut(s) 532
NspI RCATGY 1 cut(s) 27
OliI CACNNNNGTG 1 cut(s) 720
PciSI GCTCTTC 1 cut(s) 498
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 2 cut(s) 87, 807
PleI GAGTC 2 cut(s) 790, 823
PpsI GAGTC 2 cut(s) 790, 823
Psp124BI GAGCTC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 39
PsuI RGATCY 2 cut(s) 118, 307
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
RseI CAYNNNNRTG 2 cut(s) 657, 720
SacI GAGCTC 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 2 cut(s) 86, 806
Sau3AI GATC 5 cut(s) 118, 307, 444, 559, 649
Sau96I GGNCC 1 cut(s) 39
ScaI AGTACT 1 cut(s) 463
SchI GAGTC 2 cut(s) 790, 824
SduI GDGCHC 1 cut(s) 219
SfaNI GCATC 1 cut(s) 393
SinI GGWCC 1 cut(s) 39
SmiMI CAYNNNNRTG 2 cut(s) 657, 720
SmlI CTYRAG 2 cut(s) 798, 809
SmoI CTYRAG 2 cut(s) 798, 809
Sse9I AATT 2 cut(s) 329, 673
SsiI CCGC 2 cut(s) 88, 416
SspMI CTAG 1 cut(s) 621
SstI GAGCTC 1 cut(s) 219
TaaI ACNGT 4 cut(s) 54, 142, 341, 471
TaiI ACGT 2 cut(s) 36, 237
TaqI TCGA 1 cut(s) 288
TasI AATT 2 cut(s) 329, 673
TatI WGTACW 1 cut(s) 461
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 163
TseI GCWGC 2 cut(s) 85, 805
TspDTI ATGAA 6 cut(s) 64, 110, 199, 275, 390, 527
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 39
XapI RAATTY 1 cut(s) 329
XceI RCATGY 1 cut(s) 27
XspI CTAG 1 cut(s) 621
ZrmI AGTACT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.