pycom16g09590

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000278
Physical Location & Seq
Forward (+)
6397783 .. 6398522
740 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g09590.1

Sequence Viewer

Length: 672 bp
ATGTCTATGAAACCATCGAATATGTCGGTGAAATATGATATTGAAAAATTCAATGGGAGGAATGATTTTAGCCTTTGGCGAGTTAAGATGCGAGCTGTGCTAGTTCAACAAGGGTTGCTTAAGGCGCTACAGGGTGTGGAAGCCTTGCCACAAGATTGGTCTGCTGAAGAAAAAGAAGACGCTTTGAATCGAGCACATAGTGCAATTATGTTATCACTATCTGATGAAGTTCTTCGTGAGGTGGATAATGAAACTACTGCAGCTGGTTTGTGGCTTAAGTTGGAGAGTAGATATATGACCAAATCCCTCACCAATCGTTTGTATTTGAAGCAACGTTTGTACACTCTCCGTATGACTGAAGGTACGCCTATTCAAAATCATCTTGATGAGTTTAATAAGGTTATTATGGATTTGAAAAGTATGGATAATAAAATTGATGATGAGGATCAATCTTTGATTTTGTTGTGTTCTTTACCTCCTTCGTATGCGAATTTTGTCGAAACTTTGTTATATGGGAGAGATTCTATTTGTATGGAGAATGTAAAAGCCGCTTTGAATTCAAGAGAGTTAAAGAACAAAGTATCTGGAAATTTGAATGATTCTCATTCTGAGGCTTTGATAGCAAGAGGCAGAGATAGGGAATATGGTTCAGGAAGGGCATTGGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203
Pfam Domains
Protein Families
ANAPC4_WD40 WD40

Protein Analysis

224

Amino Acids

25.42

Weight (kDa)

5.75

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 30 - 193 1.1e-37 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 549
AclI AACGTT 1 cut(s) 334
AclWI GGATC 1 cut(s) 453
AcsI RAATTY 4 cut(s) 47, 490, 556, 589
AcuI CTGAAG 2 cut(s) 186, 378
AdeI CACNNNGTG 1 cut(s) 200
AfaI GTAC 2 cut(s) 341, 364
AflII CTTAAG 2 cut(s) 119, 275
AluBI AGCT 2 cut(s) 95, 263
AluI AGCT 2 cut(s) 95, 263
Alw21I GWGCWC 1 cut(s) 196
AlwI GGATC 1 cut(s) 453
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 4 cut(s) 47, 490, 556, 589
Asp700I GAANNNNTTC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 40, 301
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 272
BccI CCATC 1 cut(s) 22
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 2 cut(s) 128, 258
BfoI RGCGCY 1 cut(s) 128
BfrI CTTAAG 2 cut(s) 119, 275
BisI GCNGC 2 cut(s) 261, 549
BlsI GCNGC 2 cut(s) 262, 550
BmsI GCATC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 444
BseJI GATNNNNATC 1 cut(s) 444
BseMII CTCAG 1 cut(s) 600
BseXI GCAGC 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 196
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 1 cut(s) 445
BspACI CCGC 1 cut(s) 549
BspCNI CTCAG 1 cut(s) 601
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 1 cut(s) 453
BspTI CTTAAG 2 cut(s) 119, 275
BsrGI TGTACA 1 cut(s) 339
BssMI GATC 1 cut(s) 445
BstAFI CTTAAG 2 cut(s) 119, 275
BstAPI GCANNNNNTGC 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 609
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 1 cut(s) 448
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 4 cut(s) 97, 124, 200, 620
BstSFI CTRYAG 2 cut(s) 128, 258
BstV1I GCAGC 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 1 cut(s) 127
CseI GACGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 340, 363
CviJI RGCY 7 cut(s) 72, 95, 143, 263, 274, 548, 614
CviKI_1 RGCY 7 cut(s) 72, 95, 143, 263, 274, 548, 614
CviQI GTAC 2 cut(s) 340, 363
DdeI CTNAG 1 cut(s) 609
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
DraIII CACNNNGTG 1 cut(s) 200
Eco57I CTGAAG 2 cut(s) 186, 378
EcoRI GAATTC 1 cut(s) 556
FalI AAGNNNNNCTT 2 cut(s) 102, 134
Fnu4HI GCNGC 2 cut(s) 261, 549
Fsp4HI GCNGC 2 cut(s) 261, 549
FspBI CTAG 1 cut(s) 101
GlaI GCGC 1 cut(s) 126
GluI GCNGC 2 cut(s) 261, 549
HaeII RGCGCY 1 cut(s) 128
HgaI GACGC 1 cut(s) 188
HhaI GCGC 1 cut(s) 127
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 3 cut(s) 187, 521, 599
HphI GGTGA 2 cut(s) 40, 301
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 2 cut(s) 223, 610
Hpy188III TCNNGA 5 cut(s) 236, 383, 561, 585, 651
Hpy8I GTNNAC 1 cut(s) 342
HpyAV CCTTC 3 cut(s) 353, 489, 648
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 2 cut(s) 203, 260
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 124, 200, 620
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 1 cut(s) 334
HspAI GCGC 1 cut(s) 125
Kzo9I GATC 1 cut(s) 445
LpnPI CCDG 4 cut(s) 116, 249, 570, 636
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 1 cut(s) 78
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 334
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 3 cut(s) 179, 188, 224
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 6 cut(s) 47, 204, 432, 490, 556, 589
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 7 cut(s) 51, 232, 317, 436, 486, 604, 620
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 5 cut(s) 84, 120, 276, 393, 569
MslI CAYNNNNRTG 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 263
MspCI CTTAAG 2 cut(s) 119, 275
MwoI GCNNNNNNNGC 4 cut(s) 97, 124, 200, 620
NdeII GATC 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 3 cut(s) 187, 521, 599
PkrI GCNGC 2 cut(s) 262, 550
Psp1406I AACGTT 1 cut(s) 334
PstI CTGCAG 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 2 cut(s) 341, 364
RsaNI GTAC 2 cut(s) 340, 363
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 5 cut(s) 84, 120, 276, 393, 569
SatI GCNGC 2 cut(s) 261, 549
Sau3AI GATC 1 cut(s) 445
SduI GDGCHC 1 cut(s) 196
SetI ASST 7 cut(s) 97, 243, 265, 337, 364, 402, 478
SfaNI GCATC 1 cut(s) 78
SfcI CTRYAG 2 cut(s) 128, 258
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 119, 275
SmoI CTYRAG 2 cut(s) 119, 275
Sse9I AATT 6 cut(s) 47, 204, 432, 490, 556, 589
SsiI CCGC 1 cut(s) 549
SspMI CTAG 1 cut(s) 101
TaiI ACGT 1 cut(s) 337
TaqI TCGA 3 cut(s) 17, 190, 498
TasI AATT 6 cut(s) 47, 204, 432, 490, 556, 589
TatI WGTACW 1 cut(s) 339
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 3 cut(s) 187, 521, 599
Tru1I TTAA 5 cut(s) 84, 120, 276, 393, 569
Tru9I TTAA 5 cut(s) 84, 120, 276, 393, 569
TseI GCWGC 1 cut(s) 260
TspDTI ATGAA 3 cut(s) 23, 240, 264
TspGWI ACGGA 1 cut(s) 338
Vha464I CTTAAG 2 cut(s) 119, 275
XapI RAATTY 4 cut(s) 47, 490, 556, 589
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.