FvH4_3g29710

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
22768171 .. 22776262
8092 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29710.t1

Sequence Viewer

Length: 4326 bp
ATGGCGGCTGCAATGGCCGGAGAAGACCTAATGAGGCAGTCGAGTAGCCGGCGGAGCTGGCGGTCGACGAGTGTGCGGGAAATGTGGAACGCGCCGGACGTGTTCCAGAGGAGCGGGCGGCAGCAGGCGGTGGATGAGGAGGAGGAGCTCAAGTGGGCCGCCATAGAGCGGTTGCCGACTTACGATAGGATGAGGAGAGGGATGTTGACTCAGGTGATGAGCAATGGTAGGATCATGCATGATACCGTTGATGTTGCCAATCTTGGCGCTCAGGATAAGAAGCAGTTGATGGAGAGCATACTCAAGGTTGTTGAGGATGATAACGAGAAGTTCTTGCAGAGACTCCGAGCCCGAAACGATAGGGTTGGTATTGAGGTTCCGAAAGTGGAGGTTCGATTCCAGAACTTAGAGATTGAGGGAGATGCATATGTTGGCACAAGAGCACTCCCAACTCTACTCAACTCTACCTTGAACACACTAGAGTCAATAATTGGATTGGTTGGACTCTCGCCGTCGAAGAAAAGAGTTGTCAAGATACTCCAAGGTGTGAGCGGTATTGTGAAACCATCAAGGGTTACACTGCTTCTAGGACCTCCTTCTTCAGGAAAAACAACACTGCTAAAAGCTCTTGCTGGCAAACTTGATAAAGATCTAAGGGTAAGTGGGACTGTTACCTACTGTGGCCATGAATTTCATGAGTTTGTTCCTCAGAGAACTTCCGCTTACATAAGTCAGCATGATCTTCATTATGGTGAGATGACAGTTCGTGAAACATTGGATTTCTCCGGACGTTGCCTGGGAGTTGGAACCAGGTATGATATGCTGGTAGAGTTGTCTAGAAGGGAGAAAGATTCAGGTATCAAACCTGATCCTGAAATTGATGCATTCATGAAAGCCACATCTATGTCGGGCCAGGAAACCAGTTTGATCACAGATTACGTTCTCAAGATACTTGGACTAGATATATGTGCTGATATTATGGTGGGAGACGACATGAGGAGGGGTATCTCTGGAGGGCAAAAGAAGCGTGTAACTACTGGAGAAATGTTGGCTGGACCAGCAAAAGCATTTTTCATGGATGAAATATCAACAGGACTCGACAGTTCCACCACCTTTCAGATTGTCAAGTTTATGAGACAGATGGTTCATATTATGGATGTATCAATGGTCATCTCTCTCTTGCAGCCTGCACCTGAGACATATGAGCTGTTTGATGACATTATTCTTATTTCTGAGGGTCAAATTGTCTACCAAGGCCCACGGGAGAATGTTCTCGAGTTTTTTGAATATATGGGATTCAAATGCCCAGATAGAAAGGGTGTTGCTGACTTCTTGCAAGAAGTGACATCAAAGAAGGATCAAGAACAGTACTGGTATAAGAAGAACCAACCTTACAGATATGTCTCTGTACCTGATTTTGTAAGGGCTTTCACCTCTTTCCATGTTGGTCAACGGCTTGCGGAGGAACTAAGAGTTCTATATGATAAAAGAAATACACATCCTGCTGCTTTGGTGAAAGAAAAGTATGGAATATCCAACATGGAGCTCTTCAAGGCATGTATGTCAAGGGAATGGCTGCTGATGAAGCGTAACTCTTTTGTATACATCTTCAAAACTACCCAGATCACAATCATGGCTACAATTGCTTTGACTGTATTCTTAAGAACAGAAATGAAAGCTGGGGCATTAGAAGATTCCGCCAAATTTTGGGGAGCTCTGTTTTTCAGTCTCATTAATGTCATGTTTAATGGAATGGCAGAGCTTGCAATGACAGGTTTCAGGCTTCCTGTGTACTTTAAACAAAGAGATGCCTTGTTCTACCCTGGCTGGGCTTTTGGCTTGCCAATTTGGCTAACCAGAATCCCGATTTCACTGTTGGAATCTGGCATATGGATCATTCTTACATACTACACCATTGGATTTGCCCCTGCAGTCAGTAGGTTCTTTAAACAGTTCTTGGCTTTCTTCGGTATACATCAGATGGCACTCTCCCTTTTCCGTTTCATTGCAGCTCTTGGGAGATCAGAGGTTGTTGCAGGCACAATTGGTTCCTTTACTTTGCTAATGGTGTTTGTCCTGGGAGGTTTCATTGTTGCAAAAGATGACATTGAATCATGGATGATATGGGGCTACTATGTTTCACCTATGATGTATGGACAGAATGCAATTGCTATCAATGAATTTCTGGACAAAAGATGGAGTACTCCTCTCCCCAACGCAGCCCAACCCACAGTAGGAAAGCTACTTCTCAAGCAAAGAGGGCTGTATACTGAAGAGTATTGGTATTGGATCTGTGTTGCAGCGCTCTTCGCGTTCTCTTTTCTGTTTAATGTTCTTTTCATCGCATGCTTGACCTTCTTGGATCCTCTCGGTGAAACTAAAACTTTGATTGAGAATGATGACGCTGAAAGCAACAGGAAGCGGCGATCGAATCCTGAAGGTATTGACATGCAAGTGAGAAATGCTCAAGGAGGTCAAGCCAAAAGAGGAATGGTTTTGCCTTTCCAGCCCCTTTCACTTGCTTTCAACCATGTGAATTACTATGTGGATATGCCTGCTGAAATGAAAACCCAAGGGATTGATGAAGACCGACTGCAACTACTGAGGGATATTAGTGGTGCATTTAGGCCAGGCATTTTGACTGCATTAGTTGGTGTTAGTGGTGCTGGAAAGACCACCTTGATGGATGTCTTGGCTGGAAGAAAGACAGGTGGGTACATTGAAGGAAGTATTACCATCTCGGGTTACCCAAAGAATCAAGAGACATTCGCTCGGGTCAGCGGTTACTGTGAGCAGAATGACATTCATTCTCCATTTATTACTGTTTATGAATCTCTCTTATACTCTGCCTGGCTGCGTCTTGCTAAAGATGTCAAGACGGAAACACGAAAGATGTTTGTTGATGAGGTTATGGACTTAGTGGAGCTTCATCCATTAAGGAATGCTTTAGTTGGACTTCCAGGAGTTGATGGACTTTCAACTGAGCAAAGGAAGAGGCTCACCATTGCAGTGGAATTGGTTGCAAATCCGTCTATCATCTTCATGGATGAGCCAACCTCAGGTCTTGATGCAAGAGCAGCTGCCATTGTTATGCGTACTGTAAGAAACACTGTGGATACAGGACGAACTGTTGTCTGCACAATTCATCAACCTAGCATTGACATTTTCGAAGCTTTTGATGAGCTTTTCTTAATGAAAAGAGGAGGACAAGTGACTTATGCTGGACCTCTAGGTCGCCAATCTCACAAGCTTGTTGAATATTTTGAGGCTATACCAGGGGTTCCTAAGATCATTGAAGGTTACAATCCTGCTACCTGGATGTTAGACATCAGCTCTTCAGCAATGGAAGCTCAACTTGACATTGACTTTGCAGAAGTATACGCAAACTCTGATCTCTATAGGAGAACTCAGGAACTGATCAAGGAGCTAAGCACACCAGAGCCTGGCTCTAAGGATCTTTACTTCCCCACCCAATACTCACAAAGCTATCTAACTCAATGCAAGGCTTGCTTCTGGAAACAACACTGGTCATACTGGAGAAACTCACGATACAATGCCATCAGGTTTTTCATGACAATTTGCATTGGTGGATTATTTGGTGTTATCTTCTGGAGTAAGGGAGACCAGATCCATAAACAACAGGACTTGATTAATCTTTTGGGAGCTACCTATTCTGCTGTTCTTTTCCTTGGAGCTAGCAATGCTTCTGCTGTGCAATCCGTTGTTGCAGTTGAGAGAACAGTTTTCTACCGTGAAAGAGCAGCTGGAATGTATTCAGAGTTACCTTATGCATTTGCTCAGGTGGCTATTGAGACAATTTATGTTGCAATCCAAACCTTCATATATTCCTGTATTCTGTATTCCATGATCGGGTACACATGGAAGGTGGAGAAGTTTTTCTACTTCTACTACTTCATTTTCATGTGCTTTACCTACTTCTCAATGTATGGAATGATGGTGGTTGCCCTAACTCCTGGCCATCAAATTGCTGCAATTGTTATGTCTTTCTTCCTGAGTTTCTGGAACTTGTTCTCTGGTTTCCTCATCGCTAGACCGCTCATCCCTGTCTGGTGGAGGTGGTACTACTGGGGTTCTCCAGTTGCTTGGACCATCTATGGTATCTTCGGATCTCAAGTGGGTGACATGACAGCTGAAATCGATATGGCTGATGGGGATAAAGTAGCAATTAACAAATTCGTCAAGGACTATTTAGGTTTTGACTATGACTTCTTGATCCCTGTTGTCATTGCTCATGTTGGTTGGGTCCTTCTGTTCTTCTTTGTCTTTGCCTATGGCATCAAGTTCCTCAACTTCCAAAGGAGATAA

Protein Analysis

1442

Amino Acids

163.68

Weight (kDa)

7.02

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 106 - 154 1.3e-08 ABC-transporter N-terminal
ABC_tran PF00005 180 - 361 1.4e-13 ABC transporter
ABC2_membrane PF01061 516 - 728 2.6e-44 ABC-2 type transporter
PDR_assoc PF08370 733 - 797 3.9e-24 Plant PDR ABC transporter associated
ABC_tran PF00005 868 - 1020 5.8e-20 ABC transporter
ABC2_membrane PF01061 1165 - 1377 4.5e-54 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 3231
AccB7I CCANNNNNTGG 2 cut(s) 1707, 3443
AccBSI CCGCTC 4 cut(s) 114, 169, 552, 4057
AccI GTMKAC 6 cut(s) 65, 1248, 1602, 1972, 2267, 3378
AccII CGCG 2 cut(s) 92, 2312
AccIII TCCGGA 1 cut(s) 785
AcoI YGGCCR 3 cut(s) 15, 682, 3976
AcsI RAATTY 4 cut(s) 689, 1703, 2180, 4193
AcuI CTGAAG 4 cut(s) 585, 2292, 2457, 3321
AfaI GTAC 8 cut(s) 1370, 1410, 1793, 2203, 2717, 3097, 3875, 4082
AfeI AGCGCT 1 cut(s) 2304
AfiI CCNNNNNNNGG 8 cut(s) 168, 602, 1707, 1828, 2234, 3059, 3443, 3870
AflII CTTAAG 1 cut(s) 1660
AflIII ACRYGT 1 cut(s) 99
AjiI CACGTC 1 cut(s) 100
Alw21I GWGCWC 4 cut(s) 150, 445, 1548, 1717
Alw26I GTCTC 9 cut(s) 334, 981, 1129, 1190, 1408, 1733, 2756, 3615, 3806
AlwNI CAGNNNCTG 2 cut(s) 3415, 3443
Ama87I CYCGRG 3 cut(s) 1274, 2740, 2772
Aor13HI TCCGGA 1 cut(s) 785
Aor51HI AGCGCT 1 cut(s) 2304
AoxI GGCC 7 cut(s) 15, 156, 682, 910, 1255, 2627, 3976
ApoI RAATTY 4 cut(s) 689, 1703, 2180, 4193
ArsI GACNNNNNNTTYG 2 cut(s) 3350, 3382
AseI ATTAAT 2 cut(s) 1734, 3651
Asp700I GAANNNNTTC 3 cut(s) 3772, 3896, 4028
AspLEI GCGC 3 cut(s) 94, 269, 2305
AspS9I GGNCC 8 cut(s) 156, 590, 910, 1055, 1256, 3224, 4107, 4264
AsuHPI GGTGA 8 cut(s) 226, 764, 1423, 1525, 2133, 2384, 2992, 4151
AsuII TTCGAA 1 cut(s) 3168
AsuNHI GCTAGC 1 cut(s) 3695
AvaI CYCGRG 3 cut(s) 1274, 2740, 2772
AvaII GGWCC 5 cut(s) 590, 1055, 3224, 4107, 4264
AxyI CCTNAGG 1 cut(s) 3058
BalI TGGCCA 2 cut(s) 684, 3978
BamHI GGATCC 1 cut(s) 2362
BanII GRGCYC 4 cut(s) 150, 352, 1548, 1717
BarI GAAGNNNNNNTAC 2 cut(s) 3884, 3916
BbsI GAAGAC 2 cut(s) 30, 2592
Bbv12I GWGCWC 4 cut(s) 150, 445, 1548, 1717
BceAI ACGGC 2 cut(s) 496, 1469
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciVI GTATCC 1 cut(s) 3109
BclI TGATCA 2 cut(s) 927, 3417
BcoDI GTCTC 9 cut(s) 334, 981, 1129, 1190, 1408, 1733, 2756, 3615, 3806
BfaI CTAG 8 cut(s) 479, 587, 837, 959, 3153, 3230, 3696, 4050
BfmI CTRYAG 2 cut(s) 1929, 3397
BfoI RGCGCY 2 cut(s) 270, 2306
BfrI CTTAAG 1 cut(s) 1660
BfuI GTATCC 1 cut(s) 3109
BglI GCCNNNNNGGC 1 cut(s) 1849
BglII AGATCT 1 cut(s) 649
BlpI GCTNAGC 1 cut(s) 3428
BmcAI AGTACT 2 cut(s) 1370, 2203
Bme18I GGWCC 5 cut(s) 590, 1055, 3224, 4107, 4264
BmeT110I CYCGRG 3 cut(s) 1274, 2740, 2772
BmgBI CACGTC 1 cut(s) 100
BmgT120I GGNCC 8 cut(s) 156, 590, 910, 1055, 1256, 3224, 4107, 4264
BmiI GGNNCC 6 cut(s) 378, 808, 2050, 2364, 3282, 4265
BmrI ACTGGG 1 cut(s) 4096
BmsI GCATC 5 cut(s) 412, 871, 1798, 3058, 4305
BmtI GCTAGC 1 cut(s) 3699
BmuI ACTGGG 1 cut(s) 4096
BpiI GAAGAC 2 cut(s) 30, 2592
BplI GAGNNNNNCTC 8 cut(s) 2191, 2223, 2449, 2481, 3041, 3073, 3431, 3463
BpmI CTGGAG 5 cut(s) 1032, 1059, 3556, 3631, 4080
Bpu10I CCTNAGC 2 cut(s) 270, 3798
Bpu1102I GCTNAGC 1 cut(s) 3428
Bpu14I TTCGAA 1 cut(s) 3168
BpuEI CTTGAG 6 cut(s) 134, 287, 929, 2234, 2451, 4116
Bsa29I ATCGAT 1 cut(s) 4158
BsaBI GATNNNNATC 2 cut(s) 648, 1628
BsaI GGTCTC 1 cut(s) 3615
BsaJI CCNNGG 9 cut(s) 541, 796, 1252, 1259, 1822, 2077, 2572, 3275, 3688
BsaWI WCCGGW 1 cut(s) 785
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 3195, 3225
Bsc4I CCNNNNNNNGG 8 cut(s) 168, 602, 1707, 1828, 2234, 3059, 3443, 3870
Bse118I RCCGGY 1 cut(s) 48
Bse1I ACTGG 7 cut(s) 921, 1042, 1376, 3530, 3539, 4091, 4097
Bse21I CCTNAGG 1 cut(s) 3058
Bse3DI GCAATG 8 cut(s) 18, 229, 1773, 2004, 3003, 3348, 3706, 4245
Bse8I GATNNNNATC 2 cut(s) 648, 1628
BseAI TCCGGA 1 cut(s) 785
BseCI ATCGAT 1 cut(s) 4158
BseDI CCNNGG 9 cut(s) 541, 796, 1252, 1259, 1822, 2077, 2572, 3275, 3688
BseJI GATNNNNATC 2 cut(s) 648, 1628
BseLI CCNNNNNNNGG 8 cut(s) 168, 602, 1707, 1828, 2234, 3059, 3443, 3870
BseMI GCAATG 8 cut(s) 18, 229, 1773, 2004, 3003, 3348, 3706, 4245
BseNI ACTGG 7 cut(s) 921, 1042, 1376, 3530, 3539, 4091, 4097
BseRI GAGGAG 8 cut(s) 124, 152, 155, 158, 208, 1012, 2196, 3216
BseYI CCCAGC 2 cut(s) 1679, 1827
BsgI GTGCAG 2 cut(s) 1173, 3121
Bsh1236I CGCG 2 cut(s) 92, 2312
Bsh1285I CGRYCG 2 cut(s) 65, 2429
BshFI GGCC 7 cut(s) 17, 158, 684, 912, 1257, 2629, 3978
BshVI ATCGAT 1 cut(s) 4158
BsiEI CGRYCG 2 cut(s) 65, 2429
BsiHKAI GWGCWC 4 cut(s) 150, 445, 1548, 1717
BsiHKCI CYCGRG 3 cut(s) 1274, 2740, 2772
BsiSI CCGG 4 cut(s) 18, 49, 95, 786
BslFI GGGAC 1 cut(s) 679
BslI CCNNNNNNNGG 8 cut(s) 168, 602, 1707, 1828, 2234, 3059, 3443, 3870
BsmAI GTCTC 9 cut(s) 334, 981, 1129, 1190, 1408, 1733, 2756, 3615, 3806
BsmBI CGTCTC 1 cut(s) 981
BsmFI GGGAC 1 cut(s) 679
BsmI GAATGC 3 cut(s) 884, 2167, 2947
BsnI GGCC 7 cut(s) 17, 158, 684, 912, 1257, 2629, 3978
Bso31I GGTCTC 1 cut(s) 3615
BsoBI CYCGRG 3 cut(s) 1274, 2740, 2772
Bsp119I TTCGAA 1 cut(s) 3168
Bsp1286I GDGCHC 5 cut(s) 150, 352, 445, 1548, 1717
Bsp13I TCCGGA 1 cut(s) 785
Bsp1720I GCTNAGC 1 cut(s) 3428
BspANI GGCC 7 cut(s) 17, 158, 684, 912, 1257, 2629, 3978
BspDI ATCGAT 1 cut(s) 4158
BspEI TCCGGA 1 cut(s) 785
BspFNI CGCG 2 cut(s) 92, 2312
BspHI TCATGA 3 cut(s) 694, 888, 3570
BspLI GGNNCC 6 cut(s) 378, 808, 2050, 2364, 3282, 4265
BspMAI CTGCAG 1 cut(s) 1933
BspOI GCTAGC 1 cut(s) 3699
BspQI GCTCTTC 3 cut(s) 1553, 2312, 3340
BspT104I TTCGAA 1 cut(s) 3168
BspTI CTTAAG 1 cut(s) 1660
BspTNI GGTCTC 1 cut(s) 3615
BsrBI CCGCTC 4 cut(s) 114, 169, 552, 4057
BsrDI GCAATG 8 cut(s) 18, 229, 1773, 2004, 3003, 3348, 3706, 4245
BsrFI RCCGGY 1 cut(s) 48
BsrI ACTGG 7 cut(s) 921, 1042, 1376, 3530, 3539, 4091, 4097
BssAI RCCGGY 1 cut(s) 48
BssECI CCNNGG 9 cut(s) 541, 796, 1252, 1259, 1822, 2077, 2572, 3275, 3688
BssNAI GTATAC 4 cut(s) 1603, 1973, 2268, 3379
BssT1I CCWWGG 4 cut(s) 541, 1252, 2572, 3688
Bst1107I GTATAC 4 cut(s) 1603, 1973, 2268, 3379
Bst6I CTCTTC 5 cut(s) 1553, 2268, 2312, 2987, 3340
BstAFI CTTAAG 1 cut(s) 1660
BstAPI GCANNNNNTGC 2 cut(s) 1763, 3507
BstBI TTCGAA 1 cut(s) 3168
BstDSI CCRYGG 1 cut(s) 1259
BstEII GGTNACC 1 cut(s) 2744
BstENI CCTNNNNNAGG 1 cut(s) 600
BstFNI CGCG 2 cut(s) 92, 2312
BstH2I RGCGCY 2 cut(s) 270, 2306
BstHHI GCGC 3 cut(s) 94, 269, 2305
BstMAI GTCTC 9 cut(s) 334, 981, 1129, 1190, 1408, 1733, 2756, 3615, 3806
BstMCI CGRYCG 2 cut(s) 65, 2429
BstNSI RCATGY 3 cut(s) 1560, 2349, 2452
BstPI GGTNACC 1 cut(s) 2744
BstSFI CTRYAG 2 cut(s) 1929, 3397
BstUI CGCG 2 cut(s) 92, 2312
BstV2I GAAGAC 2 cut(s) 30, 2592
BstX2I RGATCY 6 cut(s) 649, 2289, 2362, 3454, 3627, 4127
BstXI CCANNNNNNTGG 3 cut(s) 2683, 3010, 4104
BstYI RGATCY 6 cut(s) 649, 2289, 2362, 3454, 3627, 4127
BstZ17I GTATAC 4 cut(s) 1603, 1973, 2268, 3379
Bsu15I ATCGAT 1 cut(s) 4158
Bsu36I CCTNAGG 1 cut(s) 3058
BsuI GTATCC 1 cut(s) 3109
BsuRI GGCC 7 cut(s) 17, 158, 684, 912, 1257, 2629, 3978
BsuTUI ATCGAT 1 cut(s) 4158
BtgI CCRYGG 1 cut(s) 1259
BtgZI GCGATG 2 cut(s) 2326, 4030
BtrI CACGTC 1 cut(s) 100
BtsI GCAGTG 3 cut(s) 578, 614, 3015
BtsIMutI CAGTG 6 cut(s) 578, 614, 1871, 3015, 3108, 3523
CaiI CAGNNNCTG 2 cut(s) 3415, 3443
CciI TCATGA 3 cut(s) 694, 888, 3570
CfoI GCGC 3 cut(s) 94, 269, 2305
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 8 cut(s) 156, 590, 910, 1055, 1256, 3224, 4107, 4264
ClaI ATCGAT 1 cut(s) 4158
CseI GACGC 2 cut(s) 2411, 2846
CsiI ACCWGGT 1 cut(s) 809
Csp6I GTAC 8 cut(s) 1369, 1409, 1792, 2202, 2716, 3096, 3874, 4081
CviQI GTAC 8 cut(s) 1369, 1409, 1792, 2202, 2716, 3096, 3874, 4081
DraI TTTAAA 2 cut(s) 1798, 1948
DrdI GACNNNNNNGTC 1 cut(s) 3231
DseDI GACNNNNNNGTC 1 cut(s) 3231
EaeI YGGCCR 3 cut(s) 15, 682, 3976
Eam1104I CTCTTC 5 cut(s) 1553, 2268, 2312, 2987, 3340
EarI CTCTTC 5 cut(s) 1553, 2268, 2312, 2987, 3340
EciI GGCGGA 2 cut(s) 67, 1687
Ecl136II GAGCTC 3 cut(s) 148, 1546, 1715
Eco130I CCWWGG 4 cut(s) 541, 1252, 2572, 3688
Eco24I GRGCYC 4 cut(s) 150, 352, 1548, 1717
Eco31I GGTCTC 1 cut(s) 3615
Eco47I GGWCC 5 cut(s) 590, 1055, 3224, 4107, 4264
Eco47III AGCGCT 1 cut(s) 2304
Eco53kI GAGCTC 3 cut(s) 148, 1546, 1715
Eco57I CTGAAG 4 cut(s) 585, 2292, 2457, 3321
Eco81I CCTNAGG 1 cut(s) 3058
Eco88I CYCGRG 3 cut(s) 1274, 2740, 2772
Eco91I GGTNACC 1 cut(s) 2744
EcoICRI GAGCTC 3 cut(s) 148, 1546, 1715
EcoNI CCTNNNNNAGG 1 cut(s) 600
EcoO109I RGGNCCY 2 cut(s) 590, 4264
EcoO65I GGTNACC 1 cut(s) 2744
EcoT14I CCWWGG 4 cut(s) 541, 1252, 2572, 3688
EcoT22I ATGCAT 4 cut(s) 240, 427, 886, 3793
EcoT38I GRGCYC 4 cut(s) 150, 352, 1548, 1717
ErhI CCWWGG 4 cut(s) 541, 1252, 2572, 3688
Esp3I CGTCTC 1 cut(s) 981
FalI AAGNNNNNCTT 8 cut(s) 2663, 2695, 2929, 2961, 3339, 3371, 3494, 3526
FaqI GGGAC 1 cut(s) 679
FauI CCCGC 2 cut(s) 69, 107
FauNDI CATATG 3 cut(s) 427, 1201, 1889
FbaI TGATCA 2 cut(s) 927, 3417
FblI GTMKAC 6 cut(s) 65, 1248, 1602, 1972, 2267, 3378
FriOI GRGCYC 4 cut(s) 150, 352, 1548, 1717
FspBI CTAG 8 cut(s) 479, 587, 837, 959, 3153, 3230, 3696, 4050
GlaI GCGC 3 cut(s) 93, 268, 2304
GsaI CCCAGC 2 cut(s) 1683, 1831
GsuI CTGGAG 5 cut(s) 1032, 1059, 3556, 3631, 4080
HaeII RGCGCY 2 cut(s) 270, 2306
HaeIII GGCC 7 cut(s) 17, 158, 684, 912, 1257, 2629, 3978
HapII CCGG 4 cut(s) 18, 49, 95, 786
HgaI GACGC 2 cut(s) 2411, 2846
HhaI GCGC 3 cut(s) 94, 269, 2305
Hin6I GCGC 3 cut(s) 92, 267, 2303
HinP1I GCGC 3 cut(s) 92, 267, 2303
HincII GTYRAC 3 cut(s) 66, 207, 1451
HindII GTYRAC 3 cut(s) 66, 207, 1451
HindIII AAGCTT 2 cut(s) 3171, 3248
HpaII CCGG 4 cut(s) 18, 49, 95, 786
HphI GGTGA 8 cut(s) 226, 764, 1423, 1525, 2133, 2384, 2992, 4151
Hpy99I CGWCG 2 cut(s) 70, 517
HpyCH4IV ACGT 3 cut(s) 99, 790, 939
HpySE526I ACGT 3 cut(s) 99, 790, 939
HspAI GCGC 3 cut(s) 92, 267, 2303
Kpn2I TCCGGA 1 cut(s) 785
KroI GCCGGC 1 cut(s) 48
KroNI GCCGGC 1 cut(s) 50
Ksp22I TGATCA 2 cut(s) 927, 3417
LguI GCTCTTC 3 cut(s) 1553, 2312, 3340
LmnI GCTCC 9 cut(s) 54, 111, 145, 1543, 1712, 2923, 3424, 3662, 3692
LweI GCATC 5 cut(s) 412, 871, 1798, 3058, 4305
MabI ACCWGGT 1 cut(s) 809
MaeI CTAG 8 cut(s) 479, 587, 837, 959, 3153, 3230, 3696, 4050
MaeII ACGT 3 cut(s) 99, 790, 939
MbiI CCGCTC 4 cut(s) 114, 169, 552, 4057
MfeI CAATTG 4 cut(s) 1641, 2043, 2166, 3993
MflI RGATCY 6 cut(s) 649, 2289, 2362, 3454, 3627, 4127
MhlI GDGCHC 5 cut(s) 150, 352, 445, 1548, 1717
MlsI TGGCCA 2 cut(s) 684, 3978
MluNI TGGCCA 2 cut(s) 684, 3978
MlyI GAGTC 5 cut(s) 202, 336, 491, 498, 1089
MmeI TCCRAC 5 cut(s) 481, 784, 1560, 1857, 2932
Mox20I TGGCCA 2 cut(s) 684, 3978
Mph1103I ATGCAT 4 cut(s) 240, 427, 886, 3793
MroI TCCGGA 1 cut(s) 785
MroNI GCCGGC 1 cut(s) 48
MroXI GAANNNNTTC 3 cut(s) 3772, 3896, 4028
MscI TGGCCA 2 cut(s) 684, 3978
MslI CAYNNNNRTG 9 cut(s) 750, 902, 1631, 2453, 2681, 3008, 3041, 3089, 3920
Msp20I TGGCCA 2 cut(s) 684, 3978
MspA1I CMGCKG 4 cut(s) 2781, 3080, 3764, 4151
MspCI CTTAAG 1 cut(s) 1660
MspI CCGG 4 cut(s) 18, 49, 95, 786
MunI CAATTG 4 cut(s) 1641, 2043, 2166, 3993
Mva1269I GAATGC 3 cut(s) 884, 2167, 2947
MvnI CGCG 2 cut(s) 92, 2312
NaeI GCCGGC 1 cut(s) 50
NdeI CATATG 3 cut(s) 427, 1201, 1889
NgoMIV GCCGGC 1 cut(s) 48
NheI GCTAGC 1 cut(s) 3695
NlaIV GGNNCC 6 cut(s) 378, 808, 2050, 2364, 3282, 4265
NmuCI GTSAC 3 cut(s) 1342, 3211, 4139
NsiI ATGCAT 4 cut(s) 240, 427, 886, 3793
NspI RCATGY 3 cut(s) 1560, 2349, 2452
NspV TTCGAA 1 cut(s) 3168
PaeI GCATGC 1 cut(s) 2349
PaeR7I CTCGAG 1 cut(s) 1274
PagI TCATGA 3 cut(s) 694, 888, 3570
PciSI GCTCTTC 3 cut(s) 1553, 2312, 3340
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 3 cut(s) 884, 2167, 2947
PdiI GCCGGC 1 cut(s) 50
PdmI GAANNNNTTC 3 cut(s) 3772, 3896, 4028
PflMI CCANNNNNTGG 2 cut(s) 1707, 3443
PfoI TCCNGGA 1 cut(s) 2959
Ple19I CGATCG 1 cut(s) 2429
PleI GAGTC 5 cut(s) 202, 336, 490, 498, 1089
PpsI GAGTC 5 cut(s) 202, 336, 490, 498, 1089
PpuMI RGGWCCY 2 cut(s) 590, 4264
PshBI ATTAAT 2 cut(s) 1734, 3651
Psp124BI GAGCTC 3 cut(s) 150, 1548, 1717
Psp5II RGGWCCY 2 cut(s) 590, 4264
PspEI GGTNACC 1 cut(s) 2744
PspFI CCCAGC 2 cut(s) 1679, 1827
PspN4I GGNNCC 6 cut(s) 378, 808, 2050, 2364, 3282, 4265
PspPI GGNCC 8 cut(s) 156, 590, 910, 1055, 1256, 3224, 4107, 4264
PspPPI RGGWCCY 2 cut(s) 590, 4264
PsrI GAACNNNNNNTAC 2 cut(s) 1376, 1408
PstI CTGCAG 1 cut(s) 1933
PstNI CAGNNNCTG 2 cut(s) 3415, 3443
PsuI RGATCY 6 cut(s) 649, 2289, 2362, 3454, 3627, 4127
PvuI CGATCG 1 cut(s) 2429
PvuII CAGCTG 3 cut(s) 3080, 3764, 4151
RsaI GTAC 8 cut(s) 1370, 1410, 1793, 2203, 2717, 3097, 3875, 4082
RsaNI GTAC 8 cut(s) 1369, 1409, 1792, 2202, 2716, 3096, 3874, 4081
RseI CAYNNNNRTG 9 cut(s) 750, 902, 1631, 2453, 2681, 3008, 3041, 3089, 3920
SacI GAGCTC 3 cut(s) 150, 1548, 1717
SalI GTCGAC 1 cut(s) 64
SapI GCTCTTC 3 cut(s) 1553, 2312, 3340
Sau96I GGNCC 8 cut(s) 156, 590, 910, 1055, 1256, 3224, 4107, 4264
ScaI AGTACT 2 cut(s) 1370, 2203
SchI GAGTC 5 cut(s) 202, 336, 491, 498, 1089
SduI GDGCHC 5 cut(s) 150, 352, 445, 1548, 1717
SexAI ACCWGGT 1 cut(s) 809
SfaNI GCATC 5 cut(s) 412, 871, 1798, 3058, 4305
SfcI CTRYAG 2 cut(s) 1929, 3397
Sfr274I CTCGAG 1 cut(s) 1274
SfuI TTCGAA 1 cut(s) 3168
SinI GGWCC 5 cut(s) 590, 1055, 3224, 4107, 4264
SlaI CTCGAG 1 cut(s) 1274
SmiMI CAYNNNNRTG 9 cut(s) 750, 902, 1631, 2453, 2681, 3008, 3041, 3089, 3920
SmlI CTYRAG 8 cut(s) 149, 302, 944, 1274, 1660, 2249, 2466, 4131
SmoI CTYRAG 8 cut(s) 149, 302, 944, 1274, 1660, 2249, 2466, 4131
SphI GCATGC 1 cut(s) 2349
SspI AATATT 1 cut(s) 3260
SspMI CTAG 8 cut(s) 479, 587, 837, 959, 3153, 3230, 3696, 4050
SstI GAGCTC 3 cut(s) 150, 1548, 1717
StyI CCWWGG 4 cut(s) 541, 1252, 2572, 3688
TaiI ACGT 3 cut(s) 102, 793, 942
TaqI TCGA 9 cut(s) 41, 65, 394, 515, 1098, 1275, 2429, 3168, 4158
TaqII GACCGA 1 cut(s) 2604
TatI WGTACW 3 cut(s) 1368, 1791, 2201
TauI GCSGC 4 cut(s) 8, 121, 161, 2425
TscAI CASTG 6 cut(s) 585, 621, 1878, 3015, 3115, 3530
TseFI GTSAC 3 cut(s) 1342, 3211, 4139
Tsp45I GTSAC 3 cut(s) 1342, 3211, 4139
TspGWI ACGGA 4 cut(s) 1988, 2894, 3018, 3709
TspRI CASTG 6 cut(s) 585, 621, 1878, 3015, 3115, 3530
Van91I CCANNNNNTGG 2 cut(s) 1707, 3443
Vha464I CTTAAG 1 cut(s) 1660
VpaK11BI GGWCC 5 cut(s) 590, 1055, 3224, 4107, 4264
VspI ATTAAT 2 cut(s) 1734, 3651
XagI CCTNNNNNAGG 1 cut(s) 600
XapI RAATTY 4 cut(s) 689, 1703, 2180, 4193
XbaI TCTAGA 1 cut(s) 836
XceI RCATGY 3 cut(s) 1560, 2349, 2452
XcmI CCANNNNNNNNNTGG 1 cut(s) 2488
XhoI CTCGAG 1 cut(s) 1274
XmiI GTMKAC 6 cut(s) 65, 1248, 1602, 1972, 2267, 3378
XmnI GAANNNNTTC 3 cut(s) 3772, 3896, 4028
XspI CTAG 8 cut(s) 479, 587, 837, 959, 3153, 3230, 3696, 4050
ZrmI AGTACT 2 cut(s) 1370, 2203
Zsp2I ATGCAT 4 cut(s) 240, 427, 886, 3793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.