Rroxscaffold_1G00025320

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
31795323 .. 31802912
7590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025320.1

Sequence Viewer

Length: 4290 bp
ATGGCGGCGGCAGCAATGGCCGGAGAAGACTTAATGAGGCAGTCGAGCAGCCGGAGGATGTCGCAGTCGAGCAGCCGGAGGAGCTGGCGGTCGACGAGTGTCCGAGAAATGTGGAACGCGCCGGACGTGTTCCAGCGGAGCGTCCGGCAGCCGGTGTTGGACGAAGAGGAGGAGCTCAAGTGGGCCGCCATAGAGCGGTTGCCGACTTATGATAGGATGAGGAGAGGCATGTTGAGGAATGTGATGAGCAATGGAAGGGTTGTGGCTGAAGAAGTTGACGTTGCGCATCTTGGGGATCAAGATAAGAAGCAGTTGATGGAAAGCATACTTAAGGTTATTGAGGAGGACAACGAGAAGTTCTTGAAGAAGCTCAGGGCCAGAAATGACAGGGTTGGTATTGATATTCCTAAAGTTGAGGTTAGATTCCAGAATTTATCAATTGAGGGAGATGCGTTTGTAGGCACCAGAGCACTTCCGACTCTCTGGAATTCCACCTTGAACGCATTAGAGGGAATACTGGGACTAGTTGGACTTTCACCATCGAAGAAAAGAGTTGTAAAGATACTACAAGATGTTAGTGGTATTATCAAACCAGCAAGGGATCTTAGGGTAAATGGGAAAGTGACTTACTGCGGCCATGAATTTAATGAATTTGTACCTCAGAGAACCTCTGCTTATATTAGCCAGCATGATCTTCATTATGGTGAGATGACAGTTCGTGAAACCTTTGATTTCTCCGGACGTTGCCTAGGAGTTGGAACAAGGTATGATATACTAGCAGAGTTGTCTAGACGGGAGAAAGATGCGGGTATCAAACCAGATCCTGCGATTGATGCATACATGAAAGCCACATCTGTGGCGGGCCAGGAAGCAAGTTTGATCACAGATTATGTCCTCAAGATACTTGGATTAGACATCTGTGCTGATATTATGGTGGGTGATGACATGAGAAGGGGAATATCCGGTGGACAAAAGAAGCGTGTCACGACTGGAGAAATGTTGGTTGGACCAGCAAAAGCATTTTTCATGGATGAAATATCAACAGGGTTGGACAGTTCCACAACCTTTCAGATTATCAAATACATGAGACAGATGGTTCACATTATGGATGTGTCAATGGTCATCTCTCTCTTGCAGCCTGCACCTGAGACGTACGATCTTTTTGATGATATTATCCTTCTTTCCGAGGGTCAGATTGTTTATCAGGGCCCACGTGAGAATGTCCTCGAGTTCTTTGAATATATGGGATTCAAATGCCCTGACAGAAAAGGTGTTGCAGACTTCTTGCAAGAAGTGACCTCAAGGAAGGACCAGGAACAATACTGGTGTAAGAAGAACCAACCTTACAGATTAGTCACAGTATCTGATTTTGCTCGGGCGTTCAGCTCCTTCCATGTTGGCCAACGGCTTGGGGAAGAACTAAGAGTTCCTTATGATAAAAGACATGCCCATCCTGCTGCTTTGGTCAAGGAAAAGTATGGAATATCCAATATGGAGCTCTTCAAAGCATGCTTTGCAAGGGAATGGCTCCTAATGAAGCGGAACTCTTTTGTGTACATATTCAAAACTACACAGATTGCCATCATGGCTACAATTGCTTTAACCGTATTCTTAAGAACAGAAATGAAACCTGGGGCACTAGATGGTTCAGCAAAGTATTGGGGGGCAATGTTTTTCAGTCTCATTAACGTCATGTTTAATGGAGTGGCAGAGCTTGCAATGACAGTTTTCCGGCTTCCAGTGTTCTTTAAACAGAGGGATGCCTTGTTCTATCCAGCGTGGGCTTTTGCCTTGCCCATTTGGGTGACCAGAATTCCTGTTTCAGTGTTGGAATCTGTGATATGGATCATTTTTACCTATTACACCATAGGATTTGCACCTGATCCTAGTAGGTTCTTCAAACAGTTACTGGCTTTCATTGGTATAAGTCAGATGGCACTCTCCCTCTTCCGTTTCATTGCAGCGCTTGGAAGATCAGACGTGGTTGCTAACACAATTGGTTCATTTACTCTGCTATTGGTATTTATCCTAGGAGGTTATATTGTTGCTAAAGATGACATCCAGTCATGGATGATTTGGGGCTACTATGTCTCACCTATGATGTATGGACAAAATGCAATTGCTATTAATGAATTTCTTGATAAAAGATGGGGCGGCCCTCCCCCTAACTCCTCCACTCAGCCTACTCTCGGAAAAGCCCTTCTCAGAGAAAGAGGCCTGTACACTGAAGAATATTGGTATTGGATTTGTGTTGGAGCGCTTTTTGGGTTTTCTTTTCTTTTCAATGGGCTGTTCATTGCAGCACTCACCTACTTGAACCCCCTTGGCGACAACAAAGGTCTGATTGTGGAGGATGATTCTGAAACCAAGAGGAGGCCACAATTGACAGAAGGTATTGATATGCAAGTGAGAACTGCAGAAGGAACTTCAAATGGACAAGCCAAGCGAGGAATGGTGTTGCCCTTCCAGCCCCTTTCACTTGCTTTCAGCCATGTGAACTACTATGTGGATATGCCTGCGGAGATGAAGACCCAAGGTATTGAAGAGAACCGACTGCAACTACTAAGAGATGTTAATGGGGCATTCAGGCCAGGAGTTCTCACTGCATTAGTTGGTGTTAGCGGTGCTGGAAAAACTACTTTGATGGATGTCTTGGCTGGAAGAAAGACTGGTGGATATATAGAAGGAAGTATTAGTATCTCAGGTTATCCAAAAAACCAAGCCACATTTGCTCGGGTTAGCGGTTATTGTGAACAGAACGACATTCATTCACCATATGTTACTGTTTATGAATCTCTGCTATACTCTGCCTGGCTACGTCTTTCTAAGGATGTTGACAAAAGCAAACGAAAGATGTTTGTTGATGAAGTTATGGACTTGGTGGAGCTTAACCCCTTGAGGAATGCTTTAGTTGGACTTCCAGGAGTTGATGGACTTTCAACTGAACAAAGAAAGAGGCTGACCATTGCTGTAGAATTGGTTGCAAATCCTTCCATTATCTTTATGGATGAGCCAACATCAGGGCTTGATGCTAGAGCAGCTGCCATTGTTATGCGTACTGTAAGAAACACCGTCGATACTGGACGAACTGTTGTCTGCACCATTCACCAGCCTAGCATTGACATTTTCGAAGCTTTTGATGAGCTTTTCTTAATGAAAAGAGGAGGACAAGTGATTTATGCTGGACCTCTTGGTGATCGATCTCACAAACTTGTTGAATATTTTGAGGCCATTCCAGGAGTTCCCAAGATAAAAGACGGCTACAACCCTGCTACATGGATGTTAGAGGTCAGCTCTGCTGCAGTTGAGGCTCAAAATAACGTTGATTTTGCCGAAATATATGCGAACTCTGAGCTGTATAGGAGCGTTCAAGAACTTATCAAGGAATTGAGCGCACCACTCCCAGGCTCCAAGGACCTTTACTTCCCCACCCAATACTCGCAAAGCTTCCCAACTCAATGCAAGGCTTGCTTTTGGAAACAACACTGGTCATACTGGAGGAATTCGCAGTACAATGCCATCAGGTTTTTCAACACAATAATGATCGGCGTACTCTTTGGTATCATCTTCTGGAAGAAAGGAAACGTGTTAGACAAACAACAAGATATTATTAACCTTCTGGGAGCAACCTATTCTGCTGTTCTTTTCCTTGGAGCGGGAAATGCTTCTGCTGTGCAATCTGTGGTTGCGATTGAGAGAACAGTTTTCTACCGAGAAAGAGCAGCAGGAATGTATTCAGAGTTGCCTTATGCATTTGCTCAAGTGGCCATTGAGACGATTTATGTTGCTATACAAACATTCATTTATTCCCTTCTTCTATTTACCATGATCGGCTATGAATTTAAAGTTGAGAAATTTTTGTATTTCTACTACTTTATATTCATGTGTTTTACATACATGTCAATGTATGGAATGATGGTGGTTGCCCTAACTCCCGGCCATCAAATCGCTGCAATTGTCATGTCCTTCTTCATGAGTTTCTGGAATTTGTTCTCCGGTTTCCTCCTCGCTAGACCGCTACTCCCGATATGGTGGAGGTGGTACTACTGGGGTTCTCCAATTGCTTGGACAATTTACGGTGTCCAATCATCTCAATTCGGTGACCGGAAGGATAAGTTTGTCGAACTTTCTGATGGAAGCATAGTAAGATTAGATCTATTCCTTAAAACGATTTGGGGTTATGACCACGACTTCCTCATACCAGTTGTCGTTGCTCATGTTGGTTGGGTCCTCCTCTTCTTCTTTGTCTTTGCTTATGGTATCAAGTACCTTAACTTCCAGAGGAGATGA

Protein Analysis

1429

Amino Acids

162.18

Weight (kDa)

8.25

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 115 - 163 4.2e-09 ABC-transporter N-terminal
ABC2_membrane_7 PF19055 379 - 430 9.7e-06 ABC-2 type transporter
ABC2_membrane PF01061 500 - 712 3e-46 ABC-2 type transporter
PDR_assoc PF08370 720 - 781 4.8e-26 Plant PDR ABC transporter associated
ABC_tran PF00005 855 - 1007 8.1e-20 ABC transporter
ABC2_membrane PF01061 1152 - 1366 3.4e-53 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 285
AccB1I GGYRCC 1 cut(s) 461
AccBSI CCGCTC 2 cut(s) 196, 3656
AccI GTMKAC 1 cut(s) 92
AccII CGCG 1 cut(s) 119
AccIII TCCGGA 1 cut(s) 737
AclI AACGTT 1 cut(s) 3321
AclWI GGATC 5 cut(s) 303, 609, 815, 1853, 1877
AcoI YGGCCR 5 cut(s) 18, 634, 1399, 3765, 3937
AcuI CTGAAG 2 cut(s) 288, 2247
AcvI CACGTG 1 cut(s) 1214
AfaI GTAC 9 cut(s) 657, 1154, 1556, 2222, 3058, 3512, 3552, 4043, 4268
AfeI AGCGCT 2 cut(s) 1965, 2259
AfiI CCNNNNNNNGG 7 cut(s) 151, 195, 2189, 2373, 3020, 3404, 3655
AflII CTTAAG 2 cut(s) 329, 1612
AflIII ACRYGT 3 cut(s) 126, 3585, 3897
AhdI GACNNNNNGTC 1 cut(s) 2062
AhlI ACTAGT 1 cut(s) 523
AjiI CACGTC 2 cut(s) 127, 1981
AjnI CCWGG 8 cut(s) 864, 1311, 1630, 2590, 2810, 2920, 3235, 3403
AjuI GAANNNNNNNTTGG 2 cut(s) 987, 1019
AleI CACNNNNGTG 1 cut(s) 854
AloI GAACNNNNNNTCC 2 cut(s) 1751, 1783
Alw21I GWGCWC 3 cut(s) 177, 472, 1500
Alw26I GTCTC 5 cut(s) 1081, 1142, 1685, 2095, 3767
AlwI GGATC 5 cut(s) 303, 609, 815, 1853, 1877
AlwNI CAGNNNCTG 3 cut(s) 824, 1364, 1909
Ama87I CYCGRG 3 cut(s) 1226, 1374, 2733
Aor13HI TCCGGA 1 cut(s) 737
Aor51HI AGCGCT 2 cut(s) 1965, 2259
ApaI GGGCCC 1 cut(s) 1211
AseI ATTAAT 1 cut(s) 2127
Asp700I GAANNNNTTC 3 cut(s) 3664, 3733, 3989
AspA2I CCTAGG 2 cut(s) 748, 2029
AspLEI GCGC 5 cut(s) 121, 286, 1966, 2260, 3395
AsuC2I CCSGG 1 cut(s) 3936
AsuII TTCGAA 1 cut(s) 3129
AvaI CYCGRG 3 cut(s) 1226, 1374, 2733
AvaII GGWCC 5 cut(s) 1007, 1309, 3185, 3415, 4228
AvrII CCTAGG 2 cut(s) 748, 2029
BaeGI GKGCMC 2 cut(s) 1211, 1639
BalI TGGCCA 2 cut(s) 1401, 3767
BanI GGYRCC 1 cut(s) 461
BanII GRGCYC 3 cut(s) 177, 1211, 1500
BarI GAAGNNNNNNTAC 1 cut(s) 4259
BbrPI CACGTG 1 cut(s) 1214
BbsI GAAGAC 2 cut(s) 33, 2534
Bbv12I GWGCWC 3 cut(s) 177, 472, 1500
BceAI ACGGC 2 cut(s) 1421, 3274
BcgI CGANNNNNNTGC 2 cut(s) 3323, 3357
BciT130I CCWGG 8 cut(s) 866, 1313, 1632, 2592, 2812, 2922, 3237, 3405
BclI TGATCA 1 cut(s) 879
BcnI CCSGG 1 cut(s) 3936
BcoDI GTCTC 5 cut(s) 1081, 1142, 1685, 2095, 3767
BcuI ACTAGT 1 cut(s) 523
BfmI CTRYAG 3 cut(s) 2415, 2970, 3300
BfoI RGCGCY 2 cut(s) 1967, 2261
BfrI CTTAAG 2 cut(s) 329, 1612
BglI GCCNNNNNGGC 1 cut(s) 1586
BglII AGATCT 1 cut(s) 4153
BlnI CCTAGG 2 cut(s) 748, 2029
Bme1390I CCNGG 9 cut(s) 866, 1313, 1632, 2592, 2812, 2922, 3237, 3405, 3936
Bme18I GGWCC 5 cut(s) 1007, 1309, 3185, 3415, 4228
BmeRI GACNNNNNGTC 1 cut(s) 2062
BmeT110I CYCGRG 3 cut(s) 1226, 1374, 2733
BmgBI CACGTC 2 cut(s) 127, 1981
BmiI GGNNCC 5 cut(s) 463, 1209, 1529, 3409, 4229
BmrFI CCNGG 9 cut(s) 866, 1313, 1632, 2592, 2812, 2922, 3237, 3405, 3936
BmrI ACTGGG 2 cut(s) 527, 4057
BmsI GCATC 6 cut(s) 295, 439, 793, 823, 1750, 3019
BmuI ACTGGG 2 cut(s) 527, 4057
BoxI GACNNNNGTC 1 cut(s) 98
BpiI GAAGAC 2 cut(s) 33, 2534
BplI GAGNNNNNCTC 2 cut(s) 3278, 3310
BpmI CTGGAG 2 cut(s) 1011, 3517
Bpu10I CCTNAGC 1 cut(s) 371
Bpu14I TTCGAA 1 cut(s) 3129
BpuEI CTTGAG 5 cut(s) 161, 881, 1285, 2917, 3744
BpuMI CCSGG 1 cut(s) 3936
Bsa29I ATCGAT 1 cut(s) 3199
BsaAI YACGTR 1 cut(s) 1214
BsaBI GATNNNNATC 2 cut(s) 1580, 1844
BsaJI CCNNGG 9 cut(s) 748, 1185, 1631, 2029, 2323, 2533, 3403, 3411, 3649
BsaWI WCCGGW 4 cut(s) 737, 962, 3995, 4104
BsaXI ACNNNNNCTCC 6 cut(s) 164, 194, 3156, 3186, 4005, 4035
Bsc4I CCNNNNNNNGG 7 cut(s) 151, 195, 2189, 2373, 3020, 3404, 3655
Bse118I RCCGGY 1 cut(s) 151
Bse3DI GCAATG 7 cut(s) 21, 256, 1674, 1725, 1956, 2295, 2964
Bse8I GATNNNNATC 2 cut(s) 1580, 1844
BseAI TCCGGA 1 cut(s) 737
BseBI CCWGG 8 cut(s) 866, 1313, 1632, 2592, 2812, 2922, 3237, 3405
BseCI ATCGAT 1 cut(s) 3199
BseDI CCNNGG 9 cut(s) 748, 1185, 1631, 2029, 2323, 2533, 3403, 3411, 3649
BseJI GATNNNNATC 2 cut(s) 1580, 1844
BseLI CCNNNNNNNGG 7 cut(s) 151, 195, 2189, 2373, 3020, 3404, 3655
BseMI GCAATG 7 cut(s) 21, 256, 1674, 1725, 1956, 2295, 2964
BseMII CTCAG 7 cut(s) 385, 674, 1137, 2192, 2218, 2715, 3342
BseSI GKGCMC 2 cut(s) 1211, 1639
BsgI GTGCAG 2 cut(s) 1125, 3082
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 92
BshNI GGYRCC 1 cut(s) 461
BshVI ATCGAT 1 cut(s) 3199
BsiEI CGRYCG 1 cut(s) 92
BsiHKAI GWGCWC 3 cut(s) 177, 472, 1500
BsiHKCI CYCGRG 3 cut(s) 1226, 1374, 2733
BsiWI CGTACG 1 cut(s) 1152
BslFI GGGAC 1 cut(s) 534
BslI CCNNNNNNNGG 7 cut(s) 151, 195, 2189, 2373, 3020, 3404, 3655
BsmAI GTCTC 5 cut(s) 1081, 1142, 1685, 2095, 3767
BsmBI CGTCTC 2 cut(s) 1142, 3767
BsmFI GGGAC 1 cut(s) 534
BsmI GAATGC 2 cut(s) 2582, 2908
BsoBI CYCGRG 3 cut(s) 1226, 1374, 2733
Bsp119I TTCGAA 1 cut(s) 3129
Bsp120I GGGCCC 1 cut(s) 1207
Bsp1286I GDGCHC 5 cut(s) 177, 472, 1211, 1500, 1639
Bsp13I TCCGGA 1 cut(s) 737
Bsp1407I TGTACA 2 cut(s) 1554, 2220
BspCNI CTCAG 7 cut(s) 384, 673, 1138, 2191, 2217, 2714, 3343
BspDI ATCGAT 1 cut(s) 3199
BspEI TCCGGA 1 cut(s) 737
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 3972
BspLI GGNNCC 5 cut(s) 463, 1209, 1529, 3409, 4229
BspMAI CTGCAG 2 cut(s) 2419, 3304
BspPI GGATC 5 cut(s) 303, 609, 815, 1853, 1877
BspQI GCTCTTC 1 cut(s) 1505
BspT104I TTCGAA 1 cut(s) 3129
BspT107I GGYRCC 1 cut(s) 461
BspTI CTTAAG 2 cut(s) 329, 1612
BsrBI CCGCTC 2 cut(s) 196, 3656
BsrDI GCAATG 7 cut(s) 21, 256, 1674, 1725, 1956, 2295, 2964
BsrFI RCCGGY 1 cut(s) 151
BsrGI TGTACA 2 cut(s) 1554, 2220
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 9 cut(s) 748, 1185, 1631, 2029, 2323, 2533, 3403, 3411, 3649
BssT1I CCWWGG 6 cut(s) 748, 2029, 2323, 2533, 3411, 3649
Bst2UI CCWGG 8 cut(s) 866, 1313, 1632, 2592, 2812, 2922, 3237, 3405
Bst6I CTCTTC 5 cut(s) 159, 1505, 1952, 2538, 4241
BstAFI CTTAAG 2 cut(s) 329, 1612
BstAPI GCANNNNNTGC 3 cut(s) 1514, 1715, 3468
BstAUI TGTACA 2 cut(s) 1554, 2220
BstBAI YACGTR 1 cut(s) 1214
BstBI TTCGAA 1 cut(s) 3129
BstC8I GCNNGC 8 cut(s) 86, 686, 862, 1140, 1510, 1716, 2517, 3469
BstEII GGTNACC 2 cut(s) 1804, 4100
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 2 cut(s) 1967, 2261
BstHHI GCGC 5 cut(s) 121, 286, 1966, 2260, 3395
BstMAI GTCTC 5 cut(s) 1081, 1142, 1685, 2095, 3767
BstMCI CGRYCG 1 cut(s) 92
BstNI CCWGG 8 cut(s) 866, 1313, 1632, 2592, 2812, 2922, 3237, 3405
BstNSI RCATGY 4 cut(s) 232, 1448, 1512, 3901
BstPAI GACNNNNGTC 1 cut(s) 98
BstPI GGTNACC 2 cut(s) 1804, 4100
BstSCI CCNGG 9 cut(s) 864, 1311, 1630, 2590, 2810, 2920, 3235, 3403, 3934
BstSFI CTRYAG 3 cut(s) 2415, 2970, 3300
BstSLI GKGCMC 2 cut(s) 1211, 1639
BstUI CGCG 1 cut(s) 119
BstV2I GAAGAC 2 cut(s) 33, 2534
BstX2I RGATCY 3 cut(s) 601, 820, 4153
BstXI CCANNNNNNTGG 3 cut(s) 856, 1409, 4065
BstYI RGATCY 3 cut(s) 601, 820, 4153
Bsu15I ATCGAT 1 cut(s) 3199
BsuTUI ATCGAT 1 cut(s) 3199
BtrI CACGTC 2 cut(s) 127, 1981
BtsI GCAGTG 1 cut(s) 2601
BtsIMutI CAGTG 5 cut(s) 1746, 1830, 2223, 2601, 3484
Cac8I GCNNGC 8 cut(s) 86, 686, 862, 1140, 1510, 1716, 2517, 3469
CaiI CAGNNNCTG 3 cut(s) 824, 1364, 1909
CciI TCATGA 1 cut(s) 3972
CfoI GCGC 5 cut(s) 121, 286, 1966, 2260, 3395
Cfr10I RCCGGY 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 3199
CseI GACGC 1 cut(s) 130
Csp6I GTAC 9 cut(s) 656, 1153, 1555, 2221, 3057, 3511, 3551, 4042, 4267
CviQI GTAC 9 cut(s) 656, 1153, 1555, 2221, 3057, 3511, 3551, 4042, 4267
DraI TTTAAA 2 cut(s) 1750, 3844
DriI GACNNNNNGTC 1 cut(s) 2062
EaeI YGGCCR 5 cut(s) 18, 634, 1399, 3765, 3937
Eam1104I CTCTTC 5 cut(s) 159, 1505, 1952, 2538, 4241
Eam1105I GACNNNNNGTC 1 cut(s) 2062
EarI CTCTTC 5 cut(s) 159, 1505, 1952, 2538, 4241
Ecl136II GAGCTC 2 cut(s) 175, 1498
Eco130I CCWWGG 6 cut(s) 748, 2029, 2323, 2533, 3411, 3649
Eco147I AGGCCT 1 cut(s) 2217
Eco24I GRGCYC 3 cut(s) 177, 1211, 1500
Eco47I GGWCC 5 cut(s) 1007, 1309, 3185, 3415, 4228
Eco47III AGCGCT 2 cut(s) 1965, 2259
Eco53kI GAGCTC 2 cut(s) 175, 1498
Eco57I CTGAAG 2 cut(s) 288, 2247
Eco72I CACGTG 1 cut(s) 1214
Eco88I CYCGRG 3 cut(s) 1226, 1374, 2733
Eco91I GGTNACC 2 cut(s) 1804, 4100
EcoICRI GAGCTC 2 cut(s) 175, 1498
EcoO109I RGGNCCY 3 cut(s) 1207, 3415, 4228
EcoO65I GGTNACC 2 cut(s) 1804, 4100
EcoRI GAATTC 3 cut(s) 487, 1812, 3502
EcoRII CCWGG 8 cut(s) 864, 1311, 1630, 2590, 2810, 2920, 3235, 3403
EcoT14I CCWWGG 6 cut(s) 748, 2029, 2323, 2533, 3411, 3649
EcoT22I ATGCAT 2 cut(s) 838, 3754
EcoT38I GRGCYC 3 cut(s) 177, 1211, 1500
ErhI CCWWGG 6 cut(s) 748, 2029, 2323, 2533, 3411, 3649
Esp3I CGTCTC 2 cut(s) 1142, 3767
FalI AAGNNNNNCTT 4 cut(s) 1414, 1446, 3455, 3487
FaqI GGGAC 1 cut(s) 534
FauI CCCGC 3 cut(s) 799, 853, 3649
FauNDI CATATG 1 cut(s) 2776
FbaI TGATCA 1 cut(s) 879
FblI GTMKAC 1 cut(s) 92
FriOI GRGCYC 3 cut(s) 177, 1211, 1500
FspI TGCGCA 1 cut(s) 285
GlaI GCGC 5 cut(s) 120, 285, 1965, 2259, 3394
GsuI CTGGAG 2 cut(s) 1011, 3517
HaeII RGCGCY 2 cut(s) 1967, 2261
HgaI GACGC 1 cut(s) 130
HhaI GCGC 5 cut(s) 121, 286, 1966, 2260, 3395
Hin6I GCGC 5 cut(s) 119, 284, 1964, 2258, 3393
HinP1I GCGC 5 cut(s) 119, 284, 1964, 2258, 3393
HincII GTYRAC 3 cut(s) 93, 277, 2836
HindII GTYRAC 3 cut(s) 93, 277, 2836
HindIII AAGCTT 2 cut(s) 3132, 3445
HinfI GANTC 6 cut(s) 423, 478, 1248, 1832, 2357, 2792
Hpy166II GTNNAC 9 cut(s) 93, 277, 968, 1099, 1555, 2223, 2497, 2753, 2836
Hpy8I GTNNAC 9 cut(s) 93, 277, 968, 1099, 1555, 2223, 2497, 2753, 2836
Hpy99I CGWCG 2 cut(s) 97, 3077
HspAI GCGC 5 cut(s) 119, 284, 1964, 2258, 3393
Kpn2I TCCGGA 1 cut(s) 737
Ksp22I TGATCA 1 cut(s) 879
LguI GCTCTTC 1 cut(s) 1505
LweI GCATC 6 cut(s) 295, 439, 793, 823, 1750, 3019
MaeIII GTNAC 8 cut(s) 622, 982, 1294, 1354, 1804, 1905, 2779, 4100
MbiI CCGCTC 2 cut(s) 196, 3656
MfeI CAATTG 7 cut(s) 438, 1593, 1995, 2118, 2381, 3954, 4059
MflI RGATCY 3 cut(s) 601, 820, 4153
MhlI GDGCHC 5 cut(s) 177, 472, 1211, 1500, 1639
MlsI TGGCCA 2 cut(s) 1401, 3767
MluNI TGGCCA 2 cut(s) 1401, 3767
MlyI GAGTC 1 cut(s) 472
MmeI TCCRAC 9 cut(s) 138, 500, 508, 736, 985, 1029, 1809, 2233, 2893
Mox20I TGGCCA 2 cut(s) 1401, 3767
Mph1103I ATGCAT 2 cut(s) 838, 3754
MroI TCCGGA 1 cut(s) 737
MroXI GAANNNNTTC 3 cut(s) 3664, 3733, 3989
MscI TGGCCA 2 cut(s) 1401, 3767
MslI CAYNNNNRTG 6 cut(s) 702, 854, 1802, 3050, 3539, 3902
Msp20I TGGCCA 2 cut(s) 1401, 3767
MspA1I CMGCKG 2 cut(s) 136, 3041
MspCI CTTAAG 2 cut(s) 329, 1612
MspR9I CCNGG 9 cut(s) 866, 1313, 1632, 2592, 2812, 2922, 3237, 3405, 3936
MunI CAATTG 7 cut(s) 438, 1593, 1995, 2118, 2381, 3954, 4059
Mva1269I GAATGC 2 cut(s) 2582, 2908
MvaI CCWGG 8 cut(s) 866, 1313, 1632, 2592, 2812, 2922, 3237, 3405
MvnI CGCG 1 cut(s) 119
NciI CCSGG 1 cut(s) 3936
NdeI CATATG 1 cut(s) 2776
NlaIV GGNNCC 5 cut(s) 463, 1209, 1529, 3409, 4229
NmuCI GTSAC 6 cut(s) 622, 982, 1294, 1354, 1804, 4100
NsbI TGCGCA 1 cut(s) 285
NsiI ATGCAT 2 cut(s) 838, 3754
NspI RCATGY 4 cut(s) 232, 1448, 1512, 3901
NspV TTCGAA 1 cut(s) 3129
OliI CACNNNNGTG 1 cut(s) 854
PaeI GCATGC 1 cut(s) 1512
PaeR7I CTCGAG 1 cut(s) 1226
PagI TCATGA 1 cut(s) 3972
PceI AGGCCT 1 cut(s) 2217
PciI ACATGT 1 cut(s) 3897
PciSI GCTCTTC 1 cut(s) 1505
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 2 cut(s) 2582, 2908
PdmI GAANNNNTTC 3 cut(s) 3664, 3733, 3989
PfeI GAWTC 5 cut(s) 423, 1248, 1832, 2357, 2792
Pfl23II CGTACG 1 cut(s) 1152
PfoI TCCNGGA 2 cut(s) 2920, 3235
PleI GAGTC 1 cut(s) 472
PmaCI CACGTG 1 cut(s) 1214
PmlI CACGTG 1 cut(s) 1214
PpsI GAGTC 1 cut(s) 472
Ppu21I YACGTR 1 cut(s) 1214
PpuMI RGGWCCY 2 cut(s) 3415, 4228
PscI ACATGT 1 cut(s) 3897
PshAI GACNNNNGTC 1 cut(s) 98
PshBI ATTAAT 1 cut(s) 2127
Psp124BI GAGCTC 2 cut(s) 177, 1500
Psp1406I AACGTT 1 cut(s) 3321
Psp5II RGGWCCY 2 cut(s) 3415, 4228
Psp6I CCWGG 8 cut(s) 864, 1311, 1630, 2590, 2810, 2920, 3235, 3403
PspCI CACGTG 1 cut(s) 1214
PspEI GGTNACC 2 cut(s) 1804, 4100
PspGI CCWGG 8 cut(s) 864, 1311, 1630, 2590, 2810, 2920, 3235, 3403
PspLI CGTACG 1 cut(s) 1152
PspN4I GGNNCC 5 cut(s) 463, 1209, 1529, 3409, 4229
PspOMI GGGCCC 1 cut(s) 1207
PspPPI RGGWCCY 2 cut(s) 3415, 4228
PspXI VCTCGAGB 1 cut(s) 1226
PsrI GAACNNNNNNTAC 2 cut(s) 1328, 1360
PstI CTGCAG 2 cut(s) 2419, 3304
PstNI CAGNNNCTG 3 cut(s) 824, 1364, 1909
PsuI RGATCY 3 cut(s) 601, 820, 4153
PvuII CAGCTG 1 cut(s) 3041
RsaI GTAC 9 cut(s) 657, 1154, 1556, 2222, 3058, 3512, 3552, 4043, 4268
RsaNI GTAC 9 cut(s) 656, 1153, 1555, 2221, 3057, 3511, 3551, 4042, 4267
RseI CAYNNNNRTG 6 cut(s) 702, 854, 1802, 3050, 3539, 3902
SacI GAGCTC 2 cut(s) 177, 1500
SalI GTCGAC 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 1505
SchI GAGTC 1 cut(s) 472
ScrFI CCNGG 9 cut(s) 866, 1313, 1632, 2592, 2812, 2922, 3237, 3405, 3936
SduI GDGCHC 5 cut(s) 177, 472, 1211, 1500, 1639
SfaNI GCATC 6 cut(s) 295, 439, 793, 823, 1750, 3019
SfcI CTRYAG 3 cut(s) 2415, 2970, 3300
Sfr274I CTCGAG 1 cut(s) 1226
SfuI TTCGAA 1 cut(s) 3129
SinI GGWCC 5 cut(s) 1007, 1309, 3185, 3415, 4228
SlaI CTCGAG 1 cut(s) 1226
SmiMI CAYNNNNRTG 6 cut(s) 702, 854, 1802, 3050, 3539, 3902
SmlI CTYRAG 8 cut(s) 176, 329, 896, 1226, 1300, 1612, 2896, 3759
SmoI CTYRAG 8 cut(s) 176, 329, 896, 1226, 1300, 1612, 2896, 3759
SpeI ACTAGT 1 cut(s) 523
SphI GCATGC 1 cut(s) 1512
SseBI AGGCCT 1 cut(s) 2217
SspI AATATT 2 cut(s) 2234, 3221
SstI GAGCTC 2 cut(s) 177, 1500
StuI AGGCCT 1 cut(s) 2217
StyD4I CCNGG 9 cut(s) 864, 1311, 1630, 2590, 2810, 2920, 3235, 3403, 3934
StyI CCWWGG 6 cut(s) 748, 2029, 2323, 2533, 3411, 3649
TaqI TCGA 9 cut(s) 44, 68, 92, 542, 1227, 3075, 3129, 3199, 4122
TatI WGTACW 3 cut(s) 1554, 2220, 3510
TauI GCSGC 5 cut(s) 8, 11, 188, 636, 2157
TfiI GAWTC 5 cut(s) 423, 1248, 1832, 2357, 2792
TscAI CASTG 5 cut(s) 1746, 1830, 2230, 2608, 3491
TseFI GTSAC 6 cut(s) 622, 982, 1294, 1354, 1804, 4100
Tsp45I GTSAC 6 cut(s) 622, 982, 1294, 1354, 1804, 4100
TspGWI ACGGA 1 cut(s) 1940
TspRI CASTG 5 cut(s) 1746, 1830, 2230, 2608, 3491
Vha464I CTTAAG 2 cut(s) 329, 1612
VpaK11BI GGWCC 5 cut(s) 1007, 1309, 3185, 3415, 4228
VspI ATTAAT 1 cut(s) 2127
XbaI TCTAGA 1 cut(s) 788
XceI RCATGY 4 cut(s) 232, 1448, 1512, 3901
XcmI CCANNNNNNNNNTGG 2 cut(s) 2449, 3001
XhoI CTCGAG 1 cut(s) 1226
XmaJI CCTAGG 2 cut(s) 748, 2029
XmiI GTMKAC 1 cut(s) 92
XmnI GAANNNNTTC 3 cut(s) 3664, 3733, 3989
Zsp2I ATGCAT 2 cut(s) 838, 3754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.