Rw5G033960

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
57971794 .. 57978727
6934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G033960.1

Sequence Viewer

Length: 4338 bp
ATGGCGGCGGCAATGGCGGGAGAAGACTTAATGAGGCAGTCGAGTAGCCGGAGGAGCTGGCGGTCGACGAGTGTCCGAGAAATGTGGAACGCGCCGGACGTGTTCCAGCGGAGCGTCCGGCAGCCGGTGCTGGACGAGGAGGAGGAGCTCAAGTGGGCGGCCATAGAGCGGTTGCCGACTTATGATAGGATGAGGAGAGGCATGTTGAGGAATGTGATGAGCAATGGAAGGGTTGTGGCTGAAGAAGTTGACGTTGCGCATCTTGGGGATCAAGATAAGAAGCAGTTGATGGAAAACATACTTAAGGTTATTGAGGAGGACAACGAGAAGTTCTTGAAGAAGCTCAGGGCCAGAAACGACAGGGTTGGTATTGATATTCCTAAAGTTGAGGTTAGATTCCAGAATTTATCAATTGAGGGAGATGCGTTTGTAGGCACCAGAGCACTTCCGACTCTGTGGAATTCCACCTTGAACGCAGTCGAGGGAATACTGGGACTTGTTGGACTTTCACCATCGAAGAAAAGAGTTGTAAAGATACTACAAGATGTTAGTGGTATTATCAAACCAGCAAGGATGACACTTCTTCTTGGGCCTCCGGGATCAGGAAAAACAACATTGCTAAAAGCAGTTTCTGGCAAACTAGATAGGGATCTTAGGGTAAATGGGAAAGTGACTTACTGCGGCCATGAATTTAATGAATTTGTACCTCAGAGAACCTCTGCTTATATTAGCCAGCATGATCTTCATTATGGTGAGATGACAGTTCGTGAAACATTTGATTTCTCCGGACGTTGCCTAGGAGTTGGAACAAGGTATGATATACTAGTAGAGTTGTCTAGACGGGAGAAAGATGCAGGTATCAAACCGGATCCCGGGATTGATGCATACATGAAAGCCACATCTGTGGCGGGACAGGAAACAAGTTTGATCACAGATTATGTTCTCAAGATACTTGGATTAGATATCTGTGCTGATATTATGGTGGGTGATGACATGAGAAGGGGAATATCTGGTGGACAAAAGAAGCGTGTCACGACTGGAGAAATGTTGGTTGGACCAGCAAAAGCATTTTTCATGGATGAAATATCAACAGGGTTGGACAGTTCCACAACCTTTCAGATTGTCAAATACATGAGACAGATGGTTCATATTTTGGATGTGTCAATGGTCATCTCTCTCTTGCAGCCTGCACCAGAGACGTATGATCTTTTTGATGATGTTATGCTTCTTTCCGAGGGTCAGATTGTTTATCAAGGCCCACGTGAGAATGTCCTTGAGTTCTTTGAATATATGGGATTCAAATGCCCTGACAGAAAAGGTGTTGCAGACTTCTTGCAAGAAGTGACCTCAAGGAAGGACCAGGAACAATACTGGTGTAAGAAGAACCAACCTTACAGATTAGTCACAGTATCTGATTTTGTTCGGGCGTTCAGCTCCTTCCATGTTGGCCAACGGCTTGGGGAAGAACTAAGAGTTCCTTATGATAAAAGACATGCCCATCCTGCTGCTTTGGTCAAGGAAAAGTATGGAATATCCAATAAGGAGCTCTTCAAGGCATGCTTTGCAAGGGAATGGCTTCTAATGAAGCGGAACTCTTTTGTGTACATATTCAAAACTACACAGATTGCCATCATGGCTACAATTGCTTTGACCGTATTCTTAAGAACAAAAATGAAACCTGGGGAACTAAATGGTGCAGCAAAGTATTGGGGGGCAATGTTTTTCAGTCTCATTAACGTCATGTTTAATGGAGTGGCAGAGCTTGCAATGACAGTTTTCCGGCTTCCAGTGTTCTTTAAACAGAGGGATGCCTTGTTCTATCCAGCGTGGGCTTTTGCCTTGCCCATTTGGGTGACCAGAATTCCTGTTTCAGTGTTGGAATCTGCGATATGGATCATTTTTACCTATTACACCATAGGATTTGCACCTGATCCTAGTAGGTTCTTCAAACAGTTATTGGCTTTCATTGGTATAAGTCAGATGGCACTCTCCCTCTTCCGTTTCATTGCAGCGCTTGGAAGATCAGATGTGGTTGCTAACACAATTGGTTCATTTACACTGCTATTGGTATTTATCCTAGGAGGTTATATTGTTGCTAAAGATGACATCCAGTCATGGATGATTTGGGGCTACTATGTCTCACCTATGATGTATGGACAAAATGCAATTGCTATTAATGAATTTCTTGATAAAAGATGGGGCGGCGCTCCCCCTAACTCCTCCACTCAGCCTACTCTCGGAAAAGCCCTTCTCAGAGAAAGAGGCCTGTACACTGAAGAATATTGGTATTGGATTTGTGTTGGAGCGCTTTTTGGGTTTTCTTTTCTTTTCAATGGGCTGTTCATTGCAGCACTCACCTACTTGAACCCCCTCGGCGACAACAAAGGTCTAATTGTGGAGGATGATTCTGAAACCAAGAGGAGGCCACAATTGACAGAAGGTATTGATATGCAAGTGAGAACTGCAGAAGGAACTTCAAATGGACAAGCCAAGCGAGGAATGGTGTTGCCCTTCCAGCCCCTTTCACTCGCTTTCAGCCATGTGAACTACTATGTGGATATGCCTGCGGAGATGAAGACCCAAGGTATTGAAGAGAACCGACTGCAACTACTAAGAGATGTTAATGGGGCATTCAGGCCTGGAGTTCTCACTGCATTAGTTGGTGTTAGCGGTGCTGGAAAAACTACTTTGATGGATGTCTTAGCTGGAAGAAAGACTGGTGGATATATAGAAGGAAGTATTAGTATCTCAGGTTATCCAAAAAACCAAACCACATTTGCTCGGGTTAGCGGTTATTGTGAACAGAACGACATTCATTCACCATATGTTACTGTTTATGAATCTCTGCTATACTCAGCCTGGCTACGTCTTTCTAAGGATGTTGACAAAAGCAAACGAAAGATGTTTGTTGATGAAGTTATGGACTTGGTGGAGCTTAACCCCTTGAGGAATGCTTTAGTTGGACTTCCAGGAGTTGATGGACTTTCAACTGAACAAAGAAAGAGGCTGACCATTGCTGTAGAATTGGTTGCAAATCCTTCCATTATCTTTATGGATGAGCCAACATCAGGGCTTGATGCTAGAGCAGCTGCCATTGTTATGCGTACTGTAAGAAACACCGTCGATACTGGACGAACTGTTGTCTGCACCATTCACCAACCTAGCATTGACATTTTCGAAGCTTTTGATGAGCTTTTCTTAATGAAAAGAGGAGGACAAGTGATTTATGCTGGACCTCTTGGTGATCGGTCTCACAAACTTGTTGAATATTTTGAGGCCATTCCAGGAGTTCCCAAGATAAAAGACGGCTACAACCCTGCTACATGGATGTTAGAGGTCAGCTCTGCTGCAGTTGAGGCTCAAAATAATGTTGATTTTGCCGAAATATATGCGAACTCTGAGCTGTATAGGAGCGTTCAAGAACTTATCAAGGAATTGAGCACACCACTCCCAGGCTCCAAGGACCTTTACTTCCCCACCCAATACTCGCAAAGCTTCCCAACTCAATGCAAGGCTTGCTTTTGGAAACAACACTGGTCATACTGGAGGAATTCGCACTACAATGCCATCAGGTTTTTCAACACAATAGTCATCGGCGTACTTTTTGGCGTCATCTTCTGGAAGAAAGGAAACGTGTTAGAGAAACAACAAGATATTATTAACCTTCTGGGAGCAACATATTCTGCTGTTCTTTTCCTTGGAGCGGGAAATGCTTCTGCTGTGCAATCTGTGGTTTCGATTGAGAGAACAGTTTTCTACCGAGAAAGAGCAGCAGGAATGTATTCAGAGTTGCCTTATGCATTTGCTCAGGTGGCCATTGAGACGATTTATGTTGCTATACAAACATTCATTTATTCCCTTCTTCTATTTACCATGATCGGCTATGAATTTAAAGTTGAGAAATTTTTGTATTTCTACTACTTTATATTCATGTGTTTTACATACATGTCAATGTATGGAATGATGGTGGTTGCCCTAACTCCCGGCCATCAAATTGCTGCAATTGTCATGTCCTTCTTCATGAGTTTCTGGAATTTGTTCTCCGGTTTCCTCCTCGCTAGACCGCTACTCCCGATATGGTGGAGGTGGTACTACTGGGGTTCTCCAATTGCTTGGACAATTTACGGTGTCCAATCATCTCAATTCGGTGACCGGAAGGATAAGTTTGTCGAACTTTCTGATGGAAGCAGAGAAAGATTAGATCTATTCCTTAAAAACATTTGGGGTTATGACCACGACTTCCTCATACCAGTTGTCGTTGCTCATGTTGGTTGGGTCCTCCTCTTCTTCTTTGTCTTTGCTTATGGTATCAAGTACCTTAACTTCCAGAGGAGATGA

Protein Analysis

1445

Amino Acids

163.9

Weight (kDa)

8.57

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 106 - 154 4.3e-09 ABC-transporter N-terminal
ABC_tran PF00005 180 - 361 1.4e-14 ABC transporter
ABC2_membrane PF01061 516 - 728 2.1e-46 ABC-2 type transporter
PDR_assoc PF08370 738 - 797 7.3e-26 Plant PDR ABC transporter associated
ABC_tran PF00005 871 - 1023 6.1e-20 ABC transporter
ABC2_membrane PF01061 1168 - 1382 4.5e-53 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 258
Acc36I ACCTGC 1 cut(s) 845
AccB1I GGYRCC 1 cut(s) 434
AccBSI CCGCTC 2 cut(s) 169, 3704
AccI GTMKAC 1 cut(s) 65
AccII CGCG 1 cut(s) 92
AccIII TCCGGA 1 cut(s) 785
AclWI GGATC 7 cut(s) 276, 607, 657, 863, 876, 1901, 1925
AcoI YGGCCR 5 cut(s) 159, 682, 1447, 3813, 3985
AcuI CTGAAG 2 cut(s) 261, 2295
AcvI CACGTG 1 cut(s) 1262
AcyI GRCGYC 1 cut(s) 3609
AfaI GTAC 7 cut(s) 705, 1604, 2270, 3106, 3600, 4091, 4316
AfeI AGCGCT 2 cut(s) 2013, 2307
AfiI CCNNNNNNNGG 9 cut(s) 124, 168, 602, 872, 2237, 2421, 3068, 3452, 3703
AflII CTTAAG 2 cut(s) 302, 1660
AflIII ACRYGT 3 cut(s) 99, 3633, 3945
AhdI GACNNNNNGTC 1 cut(s) 2110
AhlI ACTAGT 1 cut(s) 823
AjiI CACGTC 1 cut(s) 100
AjnI CCWGG 7 cut(s) 1359, 1678, 2638, 2858, 2968, 3283, 3451
AjuI GAANNNNNNNTTGG 2 cut(s) 1035, 1067
AleI CACNNNNGTG 1 cut(s) 902
AloI GAACNNNNNNTCC 2 cut(s) 1799, 1831
Alw21I GWGCWC 4 cut(s) 150, 445, 1548, 3443
Alw26I GTCTC 6 cut(s) 1129, 1190, 1733, 2143, 3255, 3815
AlwI GGATC 7 cut(s) 276, 607, 657, 863, 876, 1901, 1925
AlwNI CAGNNNCTG 2 cut(s) 632, 1412
Ama87I CYCGRG 2 cut(s) 872, 2781
Aor13HI TCCGGA 1 cut(s) 785
Aor51HI AGCGCT 2 cut(s) 2013, 2307
AseI ATTAAT 1 cut(s) 2175
Asp700I GAANNNNTTC 4 cut(s) 1575, 3712, 3781, 4037
AspA2I CCTAGG 2 cut(s) 796, 2077
AspLEI GCGC 5 cut(s) 94, 259, 2014, 2207, 2308
AspS9I GGNCC 8 cut(s) 348, 590, 1055, 1256, 1357, 3233, 3463, 4276
AsuC2I CCSGG 4 cut(s) 597, 873, 874, 3984
AsuII TTCGAA 1 cut(s) 3177
AvaI CYCGRG 2 cut(s) 872, 2781
AvaII GGWCC 5 cut(s) 1055, 1357, 3233, 3463, 4276
AvrII CCTAGG 2 cut(s) 796, 2077
BalI TGGCCA 2 cut(s) 1449, 3815
BamHI GGATCC 1 cut(s) 868
BanI GGYRCC 1 cut(s) 434
BanII GRGCYC 2 cut(s) 150, 1548
BarI GAAGNNNNNNTAC 1 cut(s) 4307
BbrPI CACGTG 1 cut(s) 1262
BbsI GAAGAC 2 cut(s) 30, 2582
Bbv12I GWGCWC 4 cut(s) 150, 445, 1548, 3443
BceAI ACGGC 2 cut(s) 1469, 3322
BcgI CGANNNNNNTGC 2 cut(s) 3371, 3405
BciT130I CCWGG 7 cut(s) 1361, 1680, 2640, 2860, 2970, 3285, 3453
BclI TGATCA 1 cut(s) 927
BcnI CCSGG 4 cut(s) 597, 873, 874, 3984
BcoDI GTCTC 6 cut(s) 1129, 1190, 1733, 2143, 3255, 3815
BcuI ACTAGT 1 cut(s) 823
BfaI CTAG 9 cut(s) 641, 797, 824, 837, 1935, 2078, 3081, 3162, 4059
BfmI CTRYAG 3 cut(s) 2463, 3018, 3348
BfoI RGCGCY 3 cut(s) 2015, 2208, 2309
BfrI CTTAAG 2 cut(s) 302, 1660
BfuAI ACCTGC 1 cut(s) 845
BglI GCCNNNNNGGC 1 cut(s) 1634
BglII AGATCT 1 cut(s) 4201
BlnI CCTAGG 2 cut(s) 796, 2077
Bme18I GGWCC 5 cut(s) 1055, 1357, 3233, 3463, 4276
BmeRI GACNNNNNGTC 1 cut(s) 2110
BmeT110I CYCGRG 2 cut(s) 872, 2781
BmgBI CACGTC 1 cut(s) 100
BmgT120I GGNCC 8 cut(s) 348, 590, 1055, 1256, 1357, 3233, 3463, 4276
BmiI GGNNCC 4 cut(s) 436, 870, 3457, 4277
BmrI ACTGGG 2 cut(s) 500, 4105
BmsI GCATC 6 cut(s) 268, 412, 841, 871, 1798, 3067
BmuI ACTGGG 2 cut(s) 500, 4105
BoxI GACNNNNGTC 1 cut(s) 71
BpiI GAAGAC 2 cut(s) 30, 2582
BplI GAGNNNNNCTC 2 cut(s) 3326, 3358
BpmI CTGGAG 3 cut(s) 1059, 2661, 3565
Bpu10I CCTNAGC 2 cut(s) 344, 3807
Bpu14I TTCGAA 1 cut(s) 3177
BpuEI CTTGAG 5 cut(s) 134, 929, 1295, 1333, 2965
BpuMI CCSGG 4 cut(s) 597, 873, 874, 3984
BsaAI YACGTR 1 cut(s) 1262
BsaBI GATNNNNATC 3 cut(s) 648, 1628, 1892
BsaHI GRCGYC 1 cut(s) 3609
BsaI GGTCTC 1 cut(s) 3255
BsaWI WCCGGW 4 cut(s) 785, 865, 4043, 4152
BsaXI ACNNNNNCTCC 6 cut(s) 137, 167, 3204, 3234, 4053, 4083
Bsc4I CCNNNNNNNGG 9 cut(s) 124, 168, 602, 872, 2237, 2421, 3068, 3452, 3703
Bse118I RCCGGY 1 cut(s) 124
Bse3DI GCAATG 8 cut(s) 18, 229, 614, 1722, 1773, 2004, 2343, 3012
Bse8I GATNNNNATC 3 cut(s) 648, 1628, 1892
BseAI TCCGGA 1 cut(s) 785
BseBI CCWGG 7 cut(s) 1361, 1680, 2640, 2860, 2970, 3285, 3453
BseJI GATNNNNATC 3 cut(s) 648, 1628, 1892
BseLI CCNNNNNNNGG 9 cut(s) 124, 168, 602, 872, 2237, 2421, 3068, 3452, 3703
BseMI GCAATG 8 cut(s) 18, 229, 614, 1722, 1773, 2004, 2343, 3012
BseMII CTCAG 8 cut(s) 358, 722, 2240, 2266, 2763, 2868, 3390, 3821
BsgI GTGCAG 3 cut(s) 1173, 1716, 3130
Bsh1236I CGCG 1 cut(s) 92
Bsh1285I CGRYCG 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 434
BsiEI CGRYCG 1 cut(s) 65
BsiHKAI GWGCWC 4 cut(s) 150, 445, 1548, 3443
BsiHKCI CYCGRG 2 cut(s) 872, 2781
BslFI GGGAC 2 cut(s) 507, 924
BslI CCNNNNNNNGG 9 cut(s) 124, 168, 602, 872, 2237, 2421, 3068, 3452, 3703
BsmAI GTCTC 6 cut(s) 1129, 1190, 1733, 2143, 3255, 3815
BsmBI CGTCTC 2 cut(s) 1190, 3815
BsmFI GGGAC 2 cut(s) 507, 924
BsmI GAATGC 2 cut(s) 2630, 2956
Bso31I GGTCTC 1 cut(s) 3255
BsoBI CYCGRG 2 cut(s) 872, 2781
Bsp119I TTCGAA 1 cut(s) 3177
Bsp1286I GDGCHC 4 cut(s) 150, 445, 1548, 3443
Bsp13I TCCGGA 1 cut(s) 785
Bsp1407I TGTACA 2 cut(s) 1602, 2268
BspCNI CTCAG 8 cut(s) 357, 721, 2239, 2265, 2762, 2867, 3391, 3820
BspEI TCCGGA 1 cut(s) 785
BspFNI CGCG 1 cut(s) 92
BspHI TCATGA 1 cut(s) 4020
BspLI GGNNCC 4 cut(s) 436, 870, 3457, 4277
BspMAI CTGCAG 2 cut(s) 2467, 3352
BspMI ACCTGC 1 cut(s) 845
BspPI GGATC 7 cut(s) 276, 607, 657, 863, 876, 1901, 1925
BspQI GCTCTTC 1 cut(s) 1553
BspT104I TTCGAA 1 cut(s) 3177
BspT107I GGYRCC 1 cut(s) 434
BspTI CTTAAG 2 cut(s) 302, 1660
BspTNI GGTCTC 1 cut(s) 3255
BsrBI CCGCTC 2 cut(s) 169, 3704
BsrDI GCAATG 8 cut(s) 18, 229, 614, 1722, 1773, 2004, 2343, 3012
BsrFI RCCGGY 1 cut(s) 124
BsrGI TGTACA 2 cut(s) 1602, 2268
BssAI RCCGGY 1 cut(s) 124
BssNI GRCGYC 1 cut(s) 3609
BssT1I CCWWGG 5 cut(s) 796, 2077, 2581, 3459, 3697
Bst2UI CCWGG 7 cut(s) 1361, 1680, 2640, 2860, 2970, 3285, 3453
Bst6I CTCTTC 4 cut(s) 1553, 2000, 2586, 4289
BstACI GRCGYC 1 cut(s) 3609
BstAFI CTTAAG 2 cut(s) 302, 1660
BstAPI GCANNNNNTGC 4 cut(s) 127, 1562, 1763, 3516
BstAUI TGTACA 2 cut(s) 1602, 2268
BstBAI YACGTR 1 cut(s) 1262
BstBI TTCGAA 1 cut(s) 3177
BstC8I GCNNGC 7 cut(s) 59, 734, 1188, 1558, 1764, 2565, 3517
BstEII GGTNACC 2 cut(s) 1852, 4148
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 3 cut(s) 2015, 2208, 2309
BstHHI GCGC 5 cut(s) 94, 259, 2014, 2207, 2308
BstMAI GTCTC 6 cut(s) 1129, 1190, 1733, 2143, 3255, 3815
BstMCI CGRYCG 1 cut(s) 65
BstNI CCWGG 7 cut(s) 1361, 1680, 2640, 2860, 2970, 3285, 3453
BstNSI RCATGY 4 cut(s) 205, 1496, 1560, 3949
BstPAI GACNNNNGTC 1 cut(s) 71
BstPI GGTNACC 2 cut(s) 1852, 4148
BstSFI CTRYAG 3 cut(s) 2463, 3018, 3348
BstUI CGCG 1 cut(s) 92
BstV2I GAAGAC 2 cut(s) 30, 2582
BstX2I RGATCY 3 cut(s) 649, 868, 4201
BstXI CCANNNNNNTGG 3 cut(s) 904, 1457, 4113
BstYI RGATCY 3 cut(s) 649, 868, 4201
BtrI CACGTC 1 cut(s) 100
BtsI GCAGTG 2 cut(s) 2057, 2649
BtsIMutI CAGTG 6 cut(s) 1794, 1878, 2057, 2271, 2649, 3532
BveI ACCTGC 1 cut(s) 845
Cac8I GCNNGC 7 cut(s) 59, 734, 1188, 1558, 1764, 2565, 3517
CaiI CAGNNNCTG 2 cut(s) 632, 1412
CciI TCATGA 1 cut(s) 4020
CfoI GCGC 5 cut(s) 94, 259, 2014, 2207, 2308
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 8 cut(s) 348, 590, 1055, 1256, 1357, 3233, 3463, 4276
Cfr9I CCCGGG 1 cut(s) 872
CseI GACGC 2 cut(s) 103, 3598
Csp6I GTAC 7 cut(s) 704, 1603, 2269, 3105, 3599, 4090, 4315
CviQI GTAC 7 cut(s) 704, 1603, 2269, 3105, 3599, 4090, 4315
DraI TTTAAA 2 cut(s) 1798, 3892
DriI GACNNNNNGTC 1 cut(s) 2110
EaeI YGGCCR 5 cut(s) 159, 682, 1447, 3813, 3985
Eam1104I CTCTTC 4 cut(s) 1553, 2000, 2586, 4289
Eam1105I GACNNNNNGTC 1 cut(s) 2110
EarI CTCTTC 4 cut(s) 1553, 2000, 2586, 4289
Ecl136II GAGCTC 2 cut(s) 148, 1546
Eco130I CCWWGG 5 cut(s) 796, 2077, 2581, 3459, 3697
Eco147I AGGCCT 2 cut(s) 2265, 2638
Eco24I GRGCYC 2 cut(s) 150, 1548
Eco31I GGTCTC 1 cut(s) 3255
Eco32I GATATC 1 cut(s) 964
Eco47I GGWCC 5 cut(s) 1055, 1357, 3233, 3463, 4276
Eco47III AGCGCT 2 cut(s) 2013, 2307
Eco53kI GAGCTC 2 cut(s) 148, 1546
Eco57I CTGAAG 2 cut(s) 261, 2295
Eco72I CACGTG 1 cut(s) 1262
Eco88I CYCGRG 2 cut(s) 872, 2781
Eco91I GGTNACC 2 cut(s) 1852, 4148
EcoICRI GAGCTC 2 cut(s) 148, 1546
EcoO109I RGGNCCY 2 cut(s) 3463, 4276
EcoO65I GGTNACC 2 cut(s) 1852, 4148
EcoRI GAATTC 3 cut(s) 460, 1860, 3550
EcoRII CCWGG 7 cut(s) 1359, 1678, 2638, 2858, 2968, 3283, 3451
EcoRV GATATC 1 cut(s) 964
EcoT14I CCWWGG 5 cut(s) 796, 2077, 2581, 3459, 3697
EcoT22I ATGCAT 2 cut(s) 886, 3802
EcoT38I GRGCYC 2 cut(s) 150, 1548
ErhI CCWWGG 5 cut(s) 796, 2077, 2581, 3459, 3697
Esp3I CGTCTC 2 cut(s) 1190, 3815
FalI AAGNNNNNCTT 8 cut(s) 1462, 1494, 1532, 1564, 1544, 1576, 3503, 3535
FaqI GGGAC 2 cut(s) 507, 924
FauI CCCGC 3 cut(s) 10, 901, 3697
FauNDI CATATG 1 cut(s) 2824
FbaI TGATCA 1 cut(s) 927
FblI GTMKAC 1 cut(s) 65
FriOI GRGCYC 2 cut(s) 150, 1548
FspBI CTAG 9 cut(s) 641, 797, 824, 837, 1935, 2078, 3081, 3162, 4059
FspI TGCGCA 1 cut(s) 258
GlaI GCGC 5 cut(s) 93, 258, 2013, 2206, 2307
GsuI CTGGAG 3 cut(s) 1059, 2661, 3565
HaeII RGCGCY 3 cut(s) 2015, 2208, 2309
HgaI GACGC 2 cut(s) 103, 3598
HhaI GCGC 5 cut(s) 94, 259, 2014, 2207, 2308
Hin1I GRCGYC 1 cut(s) 3609
Hin6I GCGC 5 cut(s) 92, 257, 2012, 2205, 2306
HinP1I GCGC 5 cut(s) 92, 257, 2012, 2205, 2306
HincII GTYRAC 3 cut(s) 66, 250, 2884
HindII GTYRAC 3 cut(s) 66, 250, 2884
HindIII AAGCTT 2 cut(s) 3180, 3493
HinfI GANTC 6 cut(s) 396, 451, 1296, 1880, 2405, 2840
Hpy166II GTNNAC 8 cut(s) 66, 250, 1016, 1603, 2271, 2545, 2801, 2884
Hpy8I GTNNAC 8 cut(s) 66, 250, 1016, 1603, 2271, 2545, 2801, 2884
Hpy99I CGWCG 2 cut(s) 70, 3125
HpyCH4IV ACGT 8 cut(s) 99, 252, 790, 1199, 1261, 1737, 2866, 3633
HpySE526I ACGT 8 cut(s) 99, 252, 790, 1199, 1261, 1737, 2866, 3633
Hsp92I GRCGYC 1 cut(s) 3609
HspAI GCGC 5 cut(s) 92, 257, 2012, 2205, 2306
Kpn2I TCCGGA 1 cut(s) 785
Ksp22I TGATCA 1 cut(s) 927
LguI GCTCTTC 1 cut(s) 1553
LweI GCATC 6 cut(s) 268, 412, 841, 871, 1798, 3067
MaeI CTAG 9 cut(s) 641, 797, 824, 837, 1935, 2078, 3081, 3162, 4059
MaeII ACGT 8 cut(s) 99, 252, 790, 1199, 1261, 1737, 2866, 3633
MaeIII GTNAC 7 cut(s) 670, 1030, 1342, 1402, 1852, 2827, 4148
MbiI CCGCTC 2 cut(s) 169, 3704
MfeI CAATTG 7 cut(s) 411, 1641, 2043, 2166, 2429, 4002, 4107
MflI RGATCY 3 cut(s) 649, 868, 4201
MhlI GDGCHC 4 cut(s) 150, 445, 1548, 3443
MlsI TGGCCA 2 cut(s) 1449, 3815
MluNI TGGCCA 2 cut(s) 1449, 3815
MlyI GAGTC 1 cut(s) 445
MmeI TCCRAC 8 cut(s) 473, 481, 784, 1033, 1077, 1857, 2281, 2941
Mox20I TGGCCA 2 cut(s) 1449, 3815
Mph1103I ATGCAT 2 cut(s) 886, 3802
MroI TCCGGA 1 cut(s) 785
MroXI GAANNNNTTC 4 cut(s) 1575, 3712, 3781, 4037
MscI TGGCCA 2 cut(s) 1449, 3815
MslI CAYNNNNRTG 6 cut(s) 750, 902, 1850, 3098, 3561, 3950
Msp20I TGGCCA 2 cut(s) 1449, 3815
MspA1I CMGCKG 2 cut(s) 109, 3089
MspCI CTTAAG 2 cut(s) 302, 1660
MunI CAATTG 7 cut(s) 411, 1641, 2043, 2166, 2429, 4002, 4107
Mva1269I GAATGC 2 cut(s) 2630, 2956
MvaI CCWGG 7 cut(s) 1361, 1680, 2640, 2860, 2970, 3285, 3453
MvnI CGCG 1 cut(s) 92
NciI CCSGG 4 cut(s) 597, 873, 874, 3984
NdeI CATATG 1 cut(s) 2824
NlaIV GGNNCC 4 cut(s) 436, 870, 3457, 4277
NmeAIII GCCGAG 1 cut(s) 2352
NmuCI GTSAC 6 cut(s) 670, 1030, 1342, 1402, 1852, 4148
NsbI TGCGCA 1 cut(s) 258
NsiI ATGCAT 2 cut(s) 886, 3802
NspI RCATGY 4 cut(s) 205, 1496, 1560, 3949
NspV TTCGAA 1 cut(s) 3177
OliI CACNNNNGTG 1 cut(s) 902
PaeI GCATGC 1 cut(s) 1560
PagI TCATGA 1 cut(s) 4020
PceI AGGCCT 2 cut(s) 2265, 2638
PciI ACATGT 1 cut(s) 3945
PciSI GCTCTTC 1 cut(s) 1553
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 2 cut(s) 2630, 2956
PdmI GAANNNNTTC 4 cut(s) 1575, 3712, 3781, 4037
PfeI GAWTC 5 cut(s) 396, 1296, 1880, 2405, 2840
PfoI TCCNGGA 3 cut(s) 595, 2968, 3283
PleI GAGTC 1 cut(s) 445
PmaCI CACGTG 1 cut(s) 1262
PmlI CACGTG 1 cut(s) 1262
PpsI GAGTC 1 cut(s) 445
Ppu21I YACGTR 1 cut(s) 1262
PpuMI RGGWCCY 2 cut(s) 3463, 4276
PscI ACATGT 1 cut(s) 3945
PshAI GACNNNNGTC 1 cut(s) 71
PshBI ATTAAT 1 cut(s) 2175
Psp124BI GAGCTC 2 cut(s) 150, 1548
Psp5II RGGWCCY 2 cut(s) 3463, 4276
Psp6I CCWGG 7 cut(s) 1359, 1678, 2638, 2858, 2968, 3283, 3451
PspCI CACGTG 1 cut(s) 1262
PspEI GGTNACC 2 cut(s) 1852, 4148
PspGI CCWGG 7 cut(s) 1359, 1678, 2638, 2858, 2968, 3283, 3451
PspN4I GGNNCC 4 cut(s) 436, 870, 3457, 4277
PspPI GGNCC 8 cut(s) 348, 590, 1055, 1256, 1357, 3233, 3463, 4276
PspPPI RGGWCCY 2 cut(s) 3463, 4276
PsrI GAACNNNNNNTAC 2 cut(s) 1376, 1408
PstI CTGCAG 2 cut(s) 2467, 3352
PstNI CAGNNNCTG 2 cut(s) 632, 1412
PsuI RGATCY 3 cut(s) 649, 868, 4201
PvuII CAGCTG 1 cut(s) 3089
RsaI GTAC 7 cut(s) 705, 1604, 2270, 3106, 3600, 4091, 4316
RsaNI GTAC 7 cut(s) 704, 1603, 2269, 3105, 3599, 4090, 4315
RseI CAYNNNNRTG 6 cut(s) 750, 902, 1850, 3098, 3561, 3950
SacI GAGCTC 2 cut(s) 150, 1548
SalI GTCGAC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 1553
Sau96I GGNCC 8 cut(s) 348, 590, 1055, 1256, 1357, 3233, 3463, 4276
SchI GAGTC 1 cut(s) 445
SduI GDGCHC 4 cut(s) 150, 445, 1548, 3443
SfaNI GCATC 6 cut(s) 268, 412, 841, 871, 1798, 3067
SfcI CTRYAG 3 cut(s) 2463, 3018, 3348
SfuI TTCGAA 1 cut(s) 3177
SinI GGWCC 5 cut(s) 1055, 1357, 3233, 3463, 4276
SmaI CCCGGG 1 cut(s) 874
SmiMI CAYNNNNRTG 6 cut(s) 750, 902, 1850, 3098, 3561, 3950
SmlI CTYRAG 7 cut(s) 149, 302, 944, 1274, 1348, 1660, 2944
SmoI CTYRAG 7 cut(s) 149, 302, 944, 1274, 1348, 1660, 2944
SpeI ACTAGT 1 cut(s) 823
SphI GCATGC 1 cut(s) 1560
SseBI AGGCCT 2 cut(s) 2265, 2638
SspI AATATT 2 cut(s) 2282, 3269
SspMI CTAG 9 cut(s) 641, 797, 824, 837, 1935, 2078, 3081, 3162, 4059
SstI GAGCTC 2 cut(s) 150, 1548
StuI AGGCCT 2 cut(s) 2265, 2638
StyI CCWWGG 5 cut(s) 796, 2077, 2581, 3459, 3697
TaiI ACGT 8 cut(s) 102, 255, 793, 1202, 1264, 1740, 2869, 3636
TaqI TCGA 8 cut(s) 41, 65, 480, 515, 3123, 3177, 3737, 4170
TaqII GACCGA 1 cut(s) 3237
TatI WGTACW 2 cut(s) 1602, 2268
TauI GCSGC 5 cut(s) 8, 11, 161, 684, 2205
TfiI GAWTC 5 cut(s) 396, 1296, 1880, 2405, 2840
TscAI CASTG 6 cut(s) 1794, 1878, 2064, 2278, 2656, 3539
TseFI GTSAC 6 cut(s) 670, 1030, 1342, 1402, 1852, 4148
Tsp45I GTSAC 6 cut(s) 670, 1030, 1342, 1402, 1852, 4148
TspGWI ACGGA 1 cut(s) 1988
TspMI CCCGGG 1 cut(s) 872
TspRI CASTG 6 cut(s) 1794, 1878, 2064, 2278, 2656, 3539
Vha464I CTTAAG 2 cut(s) 302, 1660
VpaK11BI GGWCC 5 cut(s) 1055, 1357, 3233, 3463, 4276
VspI ATTAAT 1 cut(s) 2175
XbaI TCTAGA 1 cut(s) 836
XceI RCATGY 4 cut(s) 205, 1496, 1560, 3949
XcmI CCANNNNNNNNNTGG 2 cut(s) 2497, 3049
XmaI CCCGGG 1 cut(s) 872
XmaJI CCTAGG 2 cut(s) 796, 2077
XmiI GTMKAC 1 cut(s) 65
XmnI GAANNNNTTC 4 cut(s) 1575, 3712, 3781, 4037
XspI CTAG 9 cut(s) 641, 797, 824, 837, 1935, 2078, 3081, 3162, 4059
Zsp2I ATGCAT 2 cut(s) 886, 3802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.