Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000245

Physical Location & Seq

Genomic Coordinates Reverse (-)

59274833 .. 59284292

Gene Structure 9460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG385200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3438 bp

ATGGCGGCTGCAGCATTGGCCGGAGAAGGCTTGGTGCGGTCTGGAAGTAGCATGAATTGGCGGGCAACAAGCATGAAAGACATGTGGAATGATCAGCCAGATGCATTCCAGAGGAGTGAGAGGAAGCGGGAGGAGGAGGAGGAGCTGAGGTGGGCTGCAATAGAGCGGCTGCCCACTTATGACAGGTTGAAGAAGGGGATGTTGAGGCAGGTCATGAGCGATGGAAGGATAATGCATGATGAGGTTGATGTTACAAAGCTTGGGGCAGATGATAAGAAGAAGTTGATGGATAGCATACTAAAGGTTGTTGACGATGATAATGAGAAATTTCTCAGGAAGCTCAGGGACAGGACTGACAGGGTTGGAATCGAGGTTCCAAAGATTGAAGTGAGATTCCAGGATTTATCAGTCGAGGGAGATGCATATGTTGGGACCAGAGCACTTCCAACTCTGTACAATTCCACCTTAAATGCAATAGAGGGAGTTCTTGGACTTTGTGGGCTCTCTCCATCGAAGAAAAGGGTAGTGAAGATACTTCAAGATGTGAGTGGAATAGTGAGACCAGCAAGAATGACTCTACTTCTTGGACCTCCTGGCTCAGGAAAAACAACATTTCTAAAGGCACTTTCTGGAAAACTTGATGATGATTTAAGGGTAACAGGAAAAGTTACCTATTGTGGTCACGAGTTCTCCGAATTTGTTCCTCAGAGAACTAGTGCATATATTAGCCAGCATGATCTTCACTATGGTGAGATGACAGTACGCGAGACTCTTGATTTCTCTGGACGGTGCCTGGGAGTCGGAAGCAGTTATGAAATGCTGGCAGAAGCATCAAGGCGTGAGAAACAAGAAGGCATACAACCGGATCCTGAGATTGATGCATTCATGAAAGCCACAGCAGTGGCTGGCCAGAAAAGTAGTTTGATGACAGATTATGTTCTTAAGATACTTGGATTGGATATTTGCGCTGATACTATGGTGGGTGATGACATGAGGCGGGGCATCTCTGGAGGGCAGAAGAAGCGTGTAACTACTGGGGAAATGTTAGTTGGGCCAGCAAGAGCCCTTTTCATGGATGAAATATCAACAGGATTGGATAGTTCCACCACGTTTCAAATTGTCAAGTACATGAGGCAGATGGCTCATATTATGGACATGACAATGATCATTTCTCTCCTGCAGCCTGCACCAGAGACATTTGACCTCTTTGATGACATTATCCTACTCTCAGAGGGTCAAATTGTCTATCAAGGTTCCCGTGACAATGTTCTTGAATTTTTTGAACATATGGGCTTCAAATGCCCGAAAAGGAAAGGTGTTGCAGACTTTTTGCAAGAAGTAACTTCCAAGAAGGATCAAGAACAATACTGGTTTAAAAGGAATCAACCTTACAAGTATATCTCTGTACCCGAGTTTGCTCAAACCTTCAACTCCTTTTATATTAGTCAAAGGCTTTCAGAAGAGCTAAGAGTCCCTTATGATAAGTCTAGTACCCATCCAGGTGCTTTGGTGAGAGAAAAGTATGGAATCTCTAATTGGGAACTCTTCAAGGCATGCTTCTCAAGGGAATGGCTACTGATGAAGCGCAATTCATTTGTATACATATTCAAGACCACCCAGATAACAATCATGGCTGTAATCGCATTGACTGTGTTCTTAAGAACGGAAATGAAAGCTGGTCAAATACAAGATGCAGCAAAATTTTGGGGTGCATTGTTTTTCAGTCTCATCAATGTCATGTTTAATGGAATGGCAGAGCTTGCCATGACAGTTTTCAGGCTTCCTGTGTTCTATAAACAGAGAGATGCCTTGTTCTATCCCGGGTGGGCTTTCGGGTTGCCCCTTTGGATCCTCAGAATTCCCATTTCAGTAATGGAGTCAGGCATTTGGATCATTCTTACTTATTACTCCATTGGTTTTGCACCTGCTGCAAGTAGGTTTTTCAAACAATTCTTGGCTTTCTTTGGAGTGCATCAGATGGCTCTCTCCCTCTTCCGTTTCATTGCAGCTGTTGGAAGAACAGAAGTTGTTGCACAAACAATTGGAACCTTTACCTTGCTACTGGTCTTTGTGCTTGGAGGTTTTATAGTTGCCAAAGATGACATTAAACCATGGATGATCTGGGGCTACTATATTTCTCCTATGATGTATGGACAAAATGCCATTGCCATTAATGAGTTTCTCGACAAAAGATGGAGCAGCCCCATAACTGGTTCTAGCCAACCTACAGTTGGAAAGACCCTCCTTAAGGAAAGAGGACTGTTTGTAGACGAATATTGGTATTGGATTTGCATTGGAGCACTCCTTGGATATTCTCTTCTCTTTAACGTTCTTTTCATTGCAGCACTAACATTTTTGAAGCCACTTGGTGATTCTAAAGCGGTAATTTCAGACGACCACTCTGATCTCAATACTAAAAAGGAGTTGACATCCAATTCAGAAGGCACTGATACTCCGGTGAGGAATACCAAAGAGACTACAAGCTCAAGCATGAGTTCTTCAAATACTGAATCTCGAAGAGGAATGGTGTTGCCCTTCCAGCCCCTTTCACTTGCTTTTGACCATGTTAACTACTATGTGGATATGCCTGCTGAAATGAAGAGTCAAGGGATTCAAGAGAGCAGATTACAACTGCTACGAGATGTCAGTGGTGCTTTCAGACCAGGTGTCTTAACAGCTTTAGTAGGAGTCAGTGGTGCTGGAAAGACAACCTTGATGGATGTTTTATCAGGAAGGAAGACTGGTGGGTACATTGAGGGTAGTATAAGCATTTCTGGCTACCCAAAAAACCAAGCTACATTTGCTCGAGTTAGTGGTTATTGTGAACAAAATGACATCCATTCTCCTTATGTGACTGTCTATGAATCCCTTTTGTATTCTGCATGGTTGCGTCTTGCTTCAGATGTAAAGAAGGAAACACGAAAGATGTTTGTTGAAGAAGTCATGGAACTAGTTGAGCTTAACCCACTGAGGAATGCTTTAGTCGGACTTCCAGGAGTAGATGGTCTTTCAACTGAACAGCGGAAGAGGCTCACAATAGCTGTAGAGTTGGTAGCCAATCCCTCCATAATCTGTATGGATGAACCTACATCAGGCCTTGATGCTAGAGCTGCTGCAATTGTTATGCGTGCTGTAAGGAACACAGTAGATACTGGCCGAACTGTTGTGTGCACAATCCACCAACCAAGCATAGATATCTTTGAAGCTTTTGATGAACTACTTTTGATGAAAAGAGGAGGAAAAGTTATTTATGCTGGACCCCTAGGTTCTCATTCTCACAAACTTGTTGAGTATTTTGAGAGTATTCCAGGGGTTCAAAAAATAAAAGACGGTTACAATCCTGCCACATGGATGTTAGAAATCAGCTCCACTGCAGTTGAGACTCAACTCCACATTGATTTTGCAGAAGTTTACGCCAATTCAGACCTCTATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1145

Amino Acids

128.53

Weight (kDa)

6.63

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	105 - 153	3.3e-10	ABC-transporter N-terminal
ABC_tran	PF00005	179 - 360	2.8e-15	ABC transporter
ABC2_membrane	PF01061	515 - 727	1.9e-47	ABC-2 type transporter
PDR_assoc	PF08370	732 - 796	6.1e-28	Plant PDR ABC transporter associated
ABC_tran	PF00005	879 - 1031	2.2e-20	ABC transporter
ABC2_membrane_7	PF19055	1060 - 1129	9.7e-06	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66950 AT2G36380
fragaria_vesca	FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica	MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica	Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis	pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis	RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata	RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora	Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa	Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha	Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana	Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1933
Acc36I	ACCTGC	2 cut(s)	199, 1933
AccB1I	GGYRCC	1 cut(s)	789
AccBSI	CCGCTC	1 cut(s)	166
AccI	GTMKAC	2 cut(s)	1599, 2268
AccII	CGCG	1 cut(s)	765
AciI	CCGC	8 cut(s)	5, 37, 61, 127, 166, 997, 2381, 3022
AclI	AACGTT	1 cut(s)	2328
AclWI	GGATC	6 cut(s)	860, 873, 1362, 1843, 1856, 1898
AcoI	YGGCCR	3 cut(s)	18, 907, 3154
AcsI	RAATTY	5 cut(s)	326, 695, 1274, 1700, 1857
AcuI	CTGAAG	1 cut(s)	2883
AdeI	CACNNNGTG	1 cut(s)	2369
AfaI	GTAC	6 cut(s)	455, 762, 1127, 1407, 1492, 2750
AfiI	CCNNNNNNNGG	6 cut(s)	599, 1072, 2210, 2231, 2248, 3092
AflII	CTTAAG	3 cut(s)	941, 1657, 2246
AflIII	ACRYGT	1 cut(s)	81
AhdI	GACNNNNNGTC	1 cut(s)	2666
AhlI	ACTAGT	2 cut(s)	713, 2950
AjnI	CCWGG	7 cut(s)	396, 592, 792, 1498, 2662, 2992, 3307
AjuI	GAANNNNNNNTTGG	4 cut(s)	1032, 1064, 1519, 1551
AleI	CACNNNNGTG	2 cut(s)	747, 899
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
Alw21I	GWGCWC	3 cut(s)	442, 2302, 3173
Alw26I	GTCTC	6 cut(s)	553, 761, 1187, 1730, 2468, 3374
Alw44I	GTGCAC	1 cut(s)	3169
AlwI	GGATC	6 cut(s)	860, 873, 1362, 1843, 1856, 1898
AlwNI	CAGNNNCTG	1 cut(s)	905
Ama87I	CYCGRG	3 cut(s)	1409, 1820, 2805
AoxI	GGCC	5 cut(s)	18, 907, 1052, 3094, 3154
ApaLI	GTGCAC	1 cut(s)	3169
ApoI	RAATTY	5 cut(s)	326, 695, 1274, 1700, 1857
AseI	ATTAAT	1 cut(s)	2172
Asp700I	GAANNNNTTC	1 cut(s)	699
AspA2I	CCTAGG	1 cut(s)	3262
AspLEI	GCGC	2 cut(s)	968, 1587
AspS9I	GGNCC	4 cut(s)	432, 587, 1052, 3257
AsuC2I	CCSGG	2 cut(s)	1821, 1822
AsuHPI	GGTGA	5 cut(s)	761, 995, 1522, 2381, 2470
AvaI	CYCGRG	3 cut(s)	1409, 1820, 2805
AvaII	GGWCC	3 cut(s)	432, 587, 3257
AvrII	CCTAGG	1 cut(s)	3262
BaeGI	GKGCMC	1 cut(s)	3173
BaeI	ACNNNNGTAYC	4 cut(s)	963, 996, 2442, 2475
BalI	TGGCCA	1 cut(s)	909
BamHI	GGATCC	2 cut(s)	865, 1848
BanI	GGYRCC	1 cut(s)	789
BanII	GRGCYC	2 cut(s)	504, 1066
BauI	CACGAG	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	2744
Bbv12I	GWGCWC	3 cut(s)	442, 2302, 3173
BbvCI	CCTCAGC	1 cut(s)	146
BccI	CCATC	9 cut(s)	215, 280, 517, 1132, 1503, 1972, 2187, 2710, 2996
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	7 cut(s)	398, 594, 794, 1500, 2664, 2994, 3309
BclI	TGATCA	2 cut(s)	91, 1164
BcnI	CCSGG	2 cut(s)	1821, 1822
BcoDI	GTCTC	6 cut(s)	553, 761, 1187, 1730, 2468, 3374
BcuI	ACTAGT	2 cut(s)	713, 2950
BfaI	CTAG	6 cut(s)	714, 1488, 2217, 2951, 3105, 3263
BfmI	CTRYAG	6 cut(s)	9, 1178, 2226, 3042, 3372, 3430
BfrI	CTTAAG	3 cut(s)	941, 1657, 2246
BfuAI	ACCTGC	2 cut(s)	199, 1933
BlnI	CCTAGG	1 cut(s)	3262
Bme1390I	CCNGG	9 cut(s)	398, 594, 794, 1500, 1821, 1822, 2664, 2994, 3309
Bme18I	GGWCC	3 cut(s)	432, 587, 3257
BmeRI	GACNNNNNGTC	1 cut(s)	2666
BmeT110I	CYCGRG	3 cut(s)	1409, 1820, 2805
BmgT120I	GGNCC	4 cut(s)	432, 587, 1052, 3257
BmiI	GGNNCC	8 cut(s)	375, 433, 791, 867, 1255, 1850, 2047, 3259
BmrFI	CCNGG	9 cut(s)	398, 594, 794, 1500, 1821, 1822, 2664, 2994, 3309
BmrI	ACTGGG	1 cut(s)	1044
BmsI	GCATC	9 cut(s)	91, 409, 839, 868, 1011, 1681, 1795, 1981, 3091
BmuI	ACTGGG	1 cut(s)	1044
BpiI	GAAGAC	1 cut(s)	2744
BpmI	CTGGAG	1 cut(s)	1029
Bpu10I	CCTNAGC	3 cut(s)	146, 341, 598
BpuEI	CTTGAG	2 cut(s)	1546, 2470
BpuMI	CCSGG	2 cut(s)	1821, 1822
BsaBI	GATNNNNATC	1 cut(s)	1625
BsaI	GGTCTC	1 cut(s)	553
BsaJI	CCNNGG	6 cut(s)	793, 1820, 2111, 2305, 3262, 3308
BsaWI	WCCGGW	2 cut(s)	862, 2455
BsaXI	ACNNNNNCTCC	8 cut(s)	134, 164, 674, 704, 2437, 2467, 3228, 3258
Bsc4I	CCNNNNNNNGG	6 cut(s)	599, 1072, 2210, 2231, 2248, 3092
Bse1I	ACTGG	6 cut(s)	1039, 1373, 2067, 2215, 2746, 3157
Bse3DI	GCAATG	3 cut(s)	2001, 2163, 2337
Bse8I	GATNNNNATC	1 cut(s)	1625
BseBI	CCWGG	7 cut(s)	398, 594, 794, 1500, 2664, 2994, 3309
BseDI	CCNNGG	6 cut(s)	793, 1820, 2111, 2305, 3262, 3308
BseGI	GGATG	9 cut(s)	204, 1081, 1495, 2121, 2429, 2725, 2835, 3085, 3357
BseJI	GATNNNNATC	1 cut(s)	1625
BseLI	CCNNNNNNNGG	6 cut(s)	599, 1072, 2210, 2231, 2248, 3092
BseMI	GCAATG	3 cut(s)	2001, 2163, 2337
BseMII	CTCAG	9 cut(s)	137, 346, 355, 612, 719, 861, 1242, 1867, 2960
BseNI	ACTGG	6 cut(s)	1039, 1373, 2067, 2215, 2746, 3157
BseRI	GAGGAG	6 cut(s)	127, 146, 149, 152, 155, 3249
BseSI	GKGCMC	1 cut(s)	3173
BsgI	GTGCAG	1 cut(s)	1170
Bsh1236I	CGCG	1 cut(s)	765
BshFI	GGCC	5 cut(s)	20, 909, 1054, 3096, 3156
BshNI	GGYRCC	1 cut(s)	789
BsiHKAI	GWGCWC	3 cut(s)	442, 2302, 3173
BsiHKCI	CYCGRG	3 cut(s)	1409, 1820, 2805
BsiSI	CCGG	4 cut(s)	21, 863, 1821, 2456
BslFI	GGGAC	3 cut(s)	359, 445, 1457
BslI	CCNNNNNNNGG	6 cut(s)	599, 1072, 2210, 2231, 2248, 3092
BsmAI	GTCTC	6 cut(s)	553, 761, 1187, 1730, 2468, 3374
BsmFI	GGGAC	3 cut(s)	359, 445, 1457
BsmI	GAATGC	3 cut(s)	104, 881, 2980
BsnI	GGCC	5 cut(s)	20, 909, 1054, 3096, 3156
Bso31I	GGTCTC	1 cut(s)	553
BsoBI	CYCGRG	3 cut(s)	1409, 1820, 2805
Bsp1286I	GDGCHC	5 cut(s)	442, 504, 1066, 2302, 3173
Bsp1407I	TGTACA	1 cut(s)	453
Bsp143I	GATC	9 cut(s)	91, 736, 865, 1164, 1354, 1848, 1890, 2118, 2404
Bsp19I	CCATGG	1 cut(s)	2111
BspACI	CCGC	8 cut(s)	5, 37, 61, 127, 166, 997, 2381, 3022
BspANI	GGCC	5 cut(s)	20, 909, 1054, 3096, 3156
BspCNI	CTCAG	9 cut(s)	138, 345, 354, 611, 718, 862, 1241, 1866, 2961
BspFNI	CGCG	1 cut(s)	765
BspHI	TCATGA	2 cut(s)	213, 885
BspLI	GGNNCC	8 cut(s)	375, 433, 791, 867, 1255, 1850, 2047, 3259
BspMAI	CTGCAG	3 cut(s)	13, 1182, 3376
BspMI	ACCTGC	2 cut(s)	199, 1933
BspPI	GGATC	6 cut(s)	860, 873, 1362, 1843, 1856, 1898
BspQI	GCTCTTC	1 cut(s)	1455
BspT107I	GGYRCC	1 cut(s)	789
BspTI	CTTAAG	3 cut(s)	941, 1657, 2246
BspTNI	GGTCTC	1 cut(s)	553
BsrBI	CCGCTC	1 cut(s)	166
BsrDI	GCAATG	3 cut(s)	2001, 2163, 2337
BsrGI	TGTACA	1 cut(s)	453
BsrI	ACTGG	6 cut(s)	1039, 1373, 2067, 2215, 2746, 3157
BssECI	CCNNGG	6 cut(s)	793, 1820, 2111, 2305, 3262, 3308
BssMI	GATC	9 cut(s)	91, 736, 865, 1164, 1354, 1848, 1890, 2118, 2404
BssNAI	GTATAC	1 cut(s)	1600
BssSI	CACGAG	1 cut(s)	683
BssT1I	CCWWGG	3 cut(s)	2111, 2305, 3262
Bst1107I	GTATAC	1 cut(s)	1600
Bst2BI	CACGAG	1 cut(s)	683
Bst2UI	CCWGG	7 cut(s)	398, 594, 794, 1500, 2664, 2994, 3309
Bst6I	CTCTTC	7 cut(s)	1455, 1550, 1997, 2322, 2512, 2594, 3020
BstAFI	CTTAAG	3 cut(s)	941, 1657, 2246
BstAPI	GCANNNNNTGC	2 cut(s)	1760, 1928
BstAUI	TGTACA	1 cut(s)	453
BstDSI	CCRYGG	1 cut(s)	2111
BstENI	CCTNNNNNAGG	3 cut(s)	597, 2246, 3090
BstF5I	GGATG	9 cut(s)	204, 1081, 1495, 2121, 2429, 2725, 2835, 3085, 3357
BstFNI	CGCG	1 cut(s)	765
BstHHI	GCGC	2 cut(s)	968, 1587
BstKTI	GATC	9 cut(s)	94, 739, 868, 1167, 1357, 1851, 1893, 2121, 2407
BstMAI	GTCTC	6 cut(s)	553, 761, 1187, 1730, 2468, 3374
BstMBI	GATC	9 cut(s)	91, 736, 865, 1164, 1354, 1848, 1890, 2118, 2404
BstNI	CCWGG	7 cut(s)	398, 594, 794, 1500, 2664, 2994, 3309
BstNSI	RCATGY	2 cut(s)	85, 1557
BstSCI	CCNGG	9 cut(s)	396, 592, 792, 1498, 1819, 1820, 2662, 2992, 3307
BstSFI	CTRYAG	6 cut(s)	9, 1178, 2226, 3042, 3372, 3430
BstSLI	GKGCMC	1 cut(s)	3173
BstUI	CGCG	1 cut(s)	765
BstV2I	GAAGAC	1 cut(s)	2744
BstX2I	RGATCY	2 cut(s)	865, 1848
BstXI	CCANNNNNNTGG	1 cut(s)	901
BstYI	RGATCY	2 cut(s)	865, 1848
BstZ17I	GTATAC	1 cut(s)	1600
BsuRI	GGCC	5 cut(s)	20, 909, 1054, 3096, 3156
BtgI	CCRYGG	1 cut(s)	2111
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	9 cut(s)	204, 1081, 1495, 2121, 2429, 2725, 2835, 3085, 3357
BtsI	GCAGTG	2 cut(s)	906, 3369
BtsIMutI	CAGTG	6 cut(s)	906, 2445, 2653, 2698, 2966, 3369
BveI	ACCTGC	2 cut(s)	199, 1933
CaiI	CAGNNNCTG	1 cut(s)	905
CciI	TCATGA	2 cut(s)	213, 885
CfoI	GCGC	2 cut(s)	968, 1587
Cfr13I	GGNCC	4 cut(s)	432, 587, 1052, 3257
Cfr9I	CCCGGG	1 cut(s)	1820
CseI	GACGC	1 cut(s)	2879
CsiI	ACCWGGT	1 cut(s)	2662
Csp6I	GTAC	6 cut(s)	454, 761, 1126, 1406, 1491, 2749
CspCI	CAANNNNNGTGG	2 cut(s)	3358, 3393
CviQI	GTAC	6 cut(s)	454, 761, 1126, 1406, 1491, 2749
DpnI	GATC	9 cut(s)	93, 738, 867, 1166, 1356, 1850, 1892, 2120, 2406
DpnII	GATC	9 cut(s)	91, 736, 865, 1164, 1354, 1848, 1890, 2118, 2404
DraI	TTTAAA	1 cut(s)	1375
DraIII	CACNNNGTG	1 cut(s)	2369
DriI	GACNNNNNGTC	1 cut(s)	2666
EaeI	YGGCCR	3 cut(s)	18, 907, 3154
Eam1104I	CTCTTC	7 cut(s)	1455, 1550, 1997, 2322, 2512, 2594, 3020
Eam1105I	GACNNNNNGTC	1 cut(s)	2666
EarI	CTCTTC	7 cut(s)	1455, 1550, 1997, 2322, 2512, 2594, 3020
Eco130I	CCWWGG	3 cut(s)	2111, 2305, 3262
Eco147I	AGGCCT	1 cut(s)	3096
Eco24I	GRGCYC	2 cut(s)	504, 1066
Eco31I	GGTCTC	1 cut(s)	553
Eco32I	GATATC	1 cut(s)	3196
Eco47I	GGWCC	3 cut(s)	432, 587, 3257
Eco57I	CTGAAG	1 cut(s)	2883
Eco88I	CYCGRG	3 cut(s)	1409, 1820, 2805
EcoNI	CCTNNNNNAGG	3 cut(s)	597, 2246, 3090
EcoRI	GAATTC	1 cut(s)	1857
EcoRII	CCWGG	7 cut(s)	396, 592, 792, 1498, 2662, 2992, 3307
EcoRV	GATATC	1 cut(s)	3196
EcoT14I	CCWWGG	3 cut(s)	2111, 2305, 3262
EcoT22I	ATGCAT	4 cut(s)	106, 237, 424, 883
EcoT38I	GRGCYC	2 cut(s)	504, 1066
ErhI	CCWWGG	3 cut(s)	2111, 2305, 3262
FalI	AAGNNNNNCTT	6 cut(s)	1459, 1491, 1541, 1573, 2696, 2728
FaqI	GGGAC	3 cut(s)	359, 445, 1457
FauI	CCCGC	3 cut(s)	54, 120, 990
FauNDI	CATATG	2 cut(s)	424, 1287
FbaI	TGATCA	2 cut(s)	91, 1164
FblI	GTMKAC	2 cut(s)	1599, 2268
FokI	GGATG	9 cut(s)	211, 1088, 1482, 2128, 2416, 2732, 2822, 3092, 3364
FriOI	GRGCYC	2 cut(s)	504, 1066
FspBI	CTAG	6 cut(s)	714, 1488, 2217, 2951, 3105, 3263
GlaI	GCGC	2 cut(s)	967, 1586
GsuI	CTGGAG	1 cut(s)	1029
HaeIII	GGCC	5 cut(s)	20, 909, 1054, 3096, 3156
HapII	CCGG	4 cut(s)	21, 863, 1821, 2456
HgaI	GACGC	1 cut(s)	2879
HhaI	GCGC	2 cut(s)	968, 1587
Hin6I	GCGC	2 cut(s)	966, 1585
HinP1I	GCGC	2 cut(s)	966, 1585
HincII	GTYRAC	3 cut(s)	310, 2427, 2569
HindII	GTYRAC	3 cut(s)	310, 2427, 2569
HindIII	AAGCTT	2 cut(s)	257, 3204
HpaI	GTTAAC	1 cut(s)	2569
HpaII	CCGG	4 cut(s)	21, 863, 1821, 2456
HphI	GGTGA	5 cut(s)	761, 995, 1522, 2381, 2470
Hpy166II	GTNNAC	8 cut(s)	310, 1600, 2269, 2427, 2569, 2825, 3171, 3412
Hpy8I	GTNNAC	8 cut(s)	310, 1600, 2269, 2427, 2569, 2825, 3171, 3412
HpyCH4IV	ACGT	2 cut(s)	1109, 2328
HpySE526I	ACGT	2 cut(s)	1109, 2328
HspAI	GCGC	2 cut(s)	966, 1585
Ksp22I	TGATCA	2 cut(s)	91, 1164
KspAI	GTTAAC	1 cut(s)	2569
Kzo9I	GATC	9 cut(s)	91, 736, 865, 1164, 1354, 1848, 1890, 2118, 2404
LguI	GCTCTTC	1 cut(s)	1455
LmnI	GCTCC	4 cut(s)	142, 2196, 2297, 3371
LweI	GCATC	9 cut(s)	91, 409, 839, 868, 1011, 1681, 1795, 1981, 3091
MabI	ACCWGGT	1 cut(s)	2662
MaeI	CTAG	6 cut(s)	714, 1488, 2217, 2951, 3105, 3263
MaeII	ACGT	2 cut(s)	1109, 2328
MaeIII	GTNAC	9 cut(s)	250, 655, 667, 680, 1027, 1259, 1339, 2851, 3332
MalI	GATC	9 cut(s)	93, 738, 867, 1166, 1356, 1850, 1892, 2120, 2406
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	9 cut(s)	91, 736, 865, 1164, 1354, 1848, 1890, 2118, 2404
MfeI	CAATTG	2 cut(s)	2040, 3117
MflI	RGATCY	2 cut(s)	865, 1848
MhlI	GDGCHC	5 cut(s)	442, 504, 1066, 2302, 3173
MlsI	TGGCCA	1 cut(s)	909
MluNI	TGGCCA	1 cut(s)	909
MlyI	GAGTC	8 cut(s)	568, 763, 807, 1479, 1886, 2611, 2697, 3376
MmeI	TCCRAC	6 cut(s)	343, 470, 781, 1993, 2212, 2965
Mox20I	TGGCCA	1 cut(s)	909
Mph1103I	ATGCAT	4 cut(s)	106, 237, 424, 883
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	909
MslI	CAYNNNNRTG	5 cut(s)	747, 899, 1160, 1500, 3350
Msp20I	TGGCCA	1 cut(s)	909
MspA1I	CMGCKG	2 cut(s)	2009, 3022
MspCI	CTTAAG	3 cut(s)	941, 1657, 2246
MspI	CCGG	4 cut(s)	21, 863, 1821, 2456
MspR9I	CCNGG	9 cut(s)	398, 594, 794, 1500, 1821, 1822, 2664, 2994, 3309
MunI	CAATTG	2 cut(s)	2040, 3117
Mva1269I	GAATGC	3 cut(s)	104, 881, 2980
MvaI	CCWGG	7 cut(s)	398, 594, 794, 1500, 2664, 2994, 3309
MvnI	CGCG	1 cut(s)	765
NciI	CCSGG	2 cut(s)	1821, 1822
NcoI	CCATGG	1 cut(s)	2111
NdeI	CATATG	2 cut(s)	424, 1287
NdeII	GATC	9 cut(s)	91, 736, 865, 1164, 1354, 1848, 1890, 2118, 2404
NlaIV	GGNNCC	8 cut(s)	375, 433, 791, 867, 1255, 1850, 2047, 3259
NmuCI	GTSAC	3 cut(s)	680, 1259, 2851
NsiI	ATGCAT	4 cut(s)	106, 237, 424, 883
NspI	RCATGY	2 cut(s)	85, 1557
OliI	CACNNNNGTG	2 cut(s)	747, 899
PaeI	GCATGC	1 cut(s)	1557
PaeR7I	CTCGAG	1 cut(s)	2805
PagI	TCATGA	2 cut(s)	213, 885
PaqCI	CACCTGC	1 cut(s)	1933
PceI	AGGCCT	1 cut(s)	3096
PciI	ACATGT	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	1455
PcsI	WCGNNNNNNNCGW	1 cut(s)	690
PctI	GAATGC	3 cut(s)	104, 881, 2980
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	8 cut(s)	366, 393, 1381, 1527, 2372, 2510, 2611, 2864
PfoI	TCCNGGA	2 cut(s)	396, 2992
PleI	GAGTC	8 cut(s)	568, 763, 806, 1478, 1885, 2610, 2696, 3376
PpsI	GAGTC	8 cut(s)	568, 763, 806, 1478, 1885, 2610, 2696, 3376
PscI	ACATGT	1 cut(s)	81
PshBI	ATTAAT	1 cut(s)	2172
Psp1406I	AACGTT	1 cut(s)	2328
Psp6I	CCWGG	7 cut(s)	396, 592, 792, 1498, 2662, 2992, 3307
PspGI	CCWGG	7 cut(s)	396, 592, 792, 1498, 2662, 2992, 3307
PspN4I	GGNNCC	8 cut(s)	375, 433, 791, 867, 1255, 1850, 2047, 3259
PspPI	GGNCC	4 cut(s)	432, 587, 1052, 3257
PspXI	VCTCGAGB	1 cut(s)	2805
PstI	CTGCAG	3 cut(s)	13, 1182, 3376
PstNI	CAGNNNCTG	1 cut(s)	905
PsuI	RGATCY	2 cut(s)	865, 1848
PvuII	CAGCTG	1 cut(s)	2009
RsaI	GTAC	6 cut(s)	455, 762, 1127, 1407, 1492, 2750
RsaNI	GTAC	6 cut(s)	454, 761, 1126, 1406, 1491, 2749
RseI	CAYNNNNRTG	5 cut(s)	747, 899, 1160, 1500, 3350
SapI	GCTCTTC	1 cut(s)	1455
Sau3AI	GATC	9 cut(s)	91, 736, 865, 1164, 1354, 1848, 1890, 2118, 2404
Sau96I	GGNCC	4 cut(s)	432, 587, 1052, 3257
SchI	GAGTC	8 cut(s)	568, 763, 807, 1479, 1886, 2611, 2697, 3376
ScrFI	CCNGG	9 cut(s)	398, 594, 794, 1500, 1821, 1822, 2664, 2994, 3309
SduI	GDGCHC	5 cut(s)	442, 504, 1066, 2302, 3173
SexAI	ACCWGGT	1 cut(s)	2662
SfaNI	GCATC	9 cut(s)	91, 409, 839, 868, 1011, 1681, 1795, 1981, 3091
SfcI	CTRYAG	6 cut(s)	9, 1178, 2226, 3042, 3372, 3430
Sfr274I	CTCGAG	1 cut(s)	2805
SinI	GGWCC	3 cut(s)	432, 587, 3257
SlaI	CTCGAG	1 cut(s)	2805
SmaI	CCCGGG	1 cut(s)	1822
SmiMI	CAYNNNNRTG	5 cut(s)	747, 899, 1160, 1500, 3350
SmlI	CTYRAG	6 cut(s)	941, 1561, 1657, 2246, 2485, 2805
SmoI	CTYRAG	6 cut(s)	941, 1561, 1657, 2246, 2485, 2805
SpeI	ACTAGT	2 cut(s)	713, 2950
SphI	GCATGC	1 cut(s)	1557
SseBI	AGGCCT	1 cut(s)	3096
SsiI	CCGC	8 cut(s)	5, 37, 61, 127, 166, 997, 2381, 3022
SspI	AATATT	1 cut(s)	2276
SspMI	CTAG	6 cut(s)	714, 1488, 2217, 2951, 3105, 3263
StuI	AGGCCT	1 cut(s)	3096
StyD4I	CCNGG	9 cut(s)	396, 592, 792, 1498, 1819, 1820, 2662, 2992, 3307
StyI	CCWWGG	3 cut(s)	2111, 2305, 3262
TaiI	ACGT	2 cut(s)	1112, 2331
TaqI	TCGA	6 cut(s)	369, 411, 512, 2184, 2515, 2806
TatI	WGTACW	2 cut(s)	453, 1125
TauI	GCSGC	2 cut(s)	8, 169
TfiI	GAWTC	8 cut(s)	366, 393, 1381, 1527, 2372, 2510, 2611, 2864
TscAI	CASTG	6 cut(s)	906, 2452, 2653, 2698, 2973, 3376
TseFI	GTSAC	3 cut(s)	680, 1259, 2851
Tsp45I	GTSAC	3 cut(s)	680, 1259, 2851
TspGWI	ACGGA	2 cut(s)	1679, 1985
TspMI	CCCGGG	1 cut(s)	1820
TspRI	CASTG	6 cut(s)	906, 2452, 2653, 2698, 2973, 3376
Vha464I	CTTAAG	3 cut(s)	941, 1657, 2246
VneI	GTGCAC	1 cut(s)	3169
VpaK11BI	GGWCC	3 cut(s)	432, 587, 3257
VspI	ATTAAT	1 cut(s)	2172
XagI	CCTNNNNNAGG	3 cut(s)	597, 2246, 3090
XapI	RAATTY	5 cut(s)	326, 695, 1274, 1700, 1857
XceI	RCATGY	2 cut(s)	85, 1557
XcmI	CCANNNNNNNNNTGG	4 cut(s)	1870, 2118, 2228, 3073
XhoI	CTCGAG	1 cut(s)	2805
XmaI	CCCGGG	1 cut(s)	1820
XmaJI	CCTAGG	1 cut(s)	3262
XmiI	GTMKAC	2 cut(s)	1599, 2268
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	6 cut(s)	714, 1488, 2217, 2951, 3105, 3263
Zsp2I	ATGCAT	4 cut(s)	106, 237, 424, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.