Rh7AG084700

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
6316521 .. 6320802
4282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG084700.1

Sequence Viewer

Length: 748 bp
ATGGCGGTGGCGGATGGTTTTCAAAATGATACGATGGCGGCTCAACCTCAGCTGCCAGCTCGGGACATTAGGCGGCCCATGAGGCGAAGGCTCGTACTGAGCTACCGACGATCCAGTGCTTGGCGGTGCATTGCCAGCCGAGGGAAACAACAAGATATTGTTAACCTTCTGGGAGCAACCTATTCTGCTGTTCTTTTCCTTGGAGCGGGAAATGCTTCTGCTGTGCAATCTGTGGTTGCGATTGAGAGAACAGTTTTCTACCGAGAAAGAGCAGCAGGAATGTATTCAGAGTTGCTTTATGCATTTGCTCAGGTGGCCATTGAGACGATTTATGTTGCTATACAAACCATCATTTATTCCCTTCTTTTATTTACCATGATCGGCTCCGAATTTAAAGTTGAGAAATTTTTGTATTTCTACTACTTTATATTCATGTGTTTTACGTACTTCTCAATGTATGGAATGATGGTGGTTGCCCTAACTCCTGGCCATCAAATCACTGCAATTGTCATGGGCTTCTTCATGAGTGTCTGGAATTTGTTCTCCGGTTTCCTCGTCCCCAGACTGCTCGGAGAGTCTCCTCCTTACTCTCTCGCTCTCTCTGCTAGGTCTGCTTCTAAGCTTCTCTCTCAAGGGAGAAGTGTCAGTAGATTTAGCAATGCTGCAGTAAGTGAAGAGTTGATCACCCCACCTGTTCATATGAATTGGTGCAGGCAAATGACATATATAAAGGGTCTAGTTGATCAAG

Protein Analysis

249

Amino Acids

28.1

Weight (kDa)

9.61

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 49 - 188 1.6e-29 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 120
AccBSI CCGCTC 1 cut(s) 206
AciI CCGC 6 cut(s) 5, 11, 38, 73, 124, 206
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 2 cut(s) 315, 487
AcsI RAATTY 3 cut(s) 389, 404, 535
AfaI GTAC 2 cut(s) 96, 446
AfiI CCNNNNNNNGG 3 cut(s) 120, 141, 205
AgsI TTSAA 1 cut(s) 23
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 4 cut(s) 52, 59, 102, 622
AluI AGCT 4 cut(s) 52, 59, 102, 622
Alw26I GTCTC 2 cut(s) 317, 582
AlwI GGATC 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 3 cut(s) 74, 315, 487
ApeKI GCWGC 3 cut(s) 52, 272, 662
ApoI RAATTY 3 cut(s) 389, 404, 535
Asp700I GAANNNNTTC 3 cut(s) 214, 283, 539
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 676
AvaI CYCGRG 1 cut(s) 60
BalI TGGCCA 2 cut(s) 317, 489
BbvCI CCTCAGC 1 cut(s) 48
BbvI GCAGC 3 cut(s) 39, 284, 649
BccI CCATC 5 cut(s) 8, 28, 356, 460, 498
BciT130I CCWGG 1 cut(s) 486
BclI TGATCA 2 cut(s) 681, 742
BcoDI GTCTC 2 cut(s) 317, 582
BfaI CTAG 2 cut(s) 606, 737
BfmI CTRYAG 1 cut(s) 663
BglI GCCNNNNNGGC 1 cut(s) 82
BisI GCNGC 5 cut(s) 39, 53, 74, 273, 663
BlsI GCNGC 5 cut(s) 40, 54, 75, 274, 664
Bme1390I CCNGG 1 cut(s) 486
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 385
BmrFI CCNGG 1 cut(s) 486
Bpu10I CCTNAGC 2 cut(s) 48, 309
BpuEI CTTGAG 1 cut(s) 615
BsaAI YACGTR 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 139, 199
BsaWI WCCGGW 1 cut(s) 545
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 141, 205
Bse1I ACTGG 1 cut(s) 114
Bse3DI GCAATG 2 cut(s) 129, 664
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 139, 199
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 3 cut(s) 120, 141, 205
BseMI GCAATG 2 cut(s) 129, 664
BseMII CTCAG 3 cut(s) 62, 89, 323
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 570
BseXI GCAGC 3 cut(s) 39, 284, 649
BsgI GTGCAG 1 cut(s) 730
BshFI GGCC 3 cut(s) 76, 317, 489
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 546
BslFI GGGAC 2 cut(s) 77, 542
BslI CCNNNNNNNGG 3 cut(s) 120, 141, 205
BsmAI GTCTC 2 cut(s) 317, 582
BsmBI CGTCTC 1 cut(s) 317
BsmFI GGGAC 2 cut(s) 77, 542
BsnI GGCC 3 cut(s) 76, 317, 489
BsoBI CYCGRG 1 cut(s) 60
Bsp143I GATC 4 cut(s) 110, 378, 681, 742
BspACI CCGC 6 cut(s) 5, 11, 38, 73, 124, 206
BspANI GGCC 3 cut(s) 76, 317, 489
BspCNI CTCAG 3 cut(s) 61, 90, 322
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 1 cut(s) 385
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 1 cut(s) 105
BsrBI CCGCTC 1 cut(s) 206
BsrDI GCAATG 2 cut(s) 129, 664
BsrI ACTGG 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 139, 199
BssMI GATC 4 cut(s) 110, 378, 681, 742
BssT1I CCWWGG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 669
BstBAI YACGTR 1 cut(s) 444
BstC8I GCNNGC 3 cut(s) 57, 136, 713
BstDEI CTNAG 4 cut(s) 48, 98, 309, 618
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 4 cut(s) 113, 381, 684, 745
BstMAI GTCTC 2 cut(s) 317, 582
BstMBI GATC 4 cut(s) 110, 378, 681, 742
BstMWI GCNNNNNNNGC 6 cut(s) 82, 135, 212, 314, 602, 611
BstNI CCWGG 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 484
BstSFI CTRYAG 1 cut(s) 663
BstSNI TACGTA 1 cut(s) 444
BstV1I GCAGC 3 cut(s) 39, 284, 649
BsuRI GGCC 3 cut(s) 76, 317, 489
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 2 cut(s) 121, 498
Cac8I GCNNGC 3 cut(s) 57, 136, 713
CciI TCATGA 1 cut(s) 522
Cfr13I GGNCC 1 cut(s) 75
Csp6I GTAC 2 cut(s) 95, 445
CviAII CATG 5 cut(s) 79, 376, 433, 511, 523
CviQI GTAC 2 cut(s) 95, 445
DdeI CTNAG 4 cut(s) 48, 98, 309, 618
DpnI GATC 4 cut(s) 112, 380, 683, 744
DpnII GATC 4 cut(s) 110, 378, 681, 742
DraI TTTAAA 1 cut(s) 394
EaeI YGGCCR 2 cut(s) 315, 487
Eam1104I CTCTTC 1 cut(s) 669
EarI CTCTTC 1 cut(s) 669
EciI GGCGGA 1 cut(s) 26
Eco105I TACGTA 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 199
Esp3I CGTCTC 1 cut(s) 317
FaeI CATG 5 cut(s) 82, 379, 436, 514, 526
FaqI GGGAC 2 cut(s) 77, 542
FatI CATG 5 cut(s) 78, 375, 432, 510, 522
FauI CCCGC 1 cut(s) 199
FauNDI CATATG 1 cut(s) 699
FbaI TGATCA 2 cut(s) 681, 742
Fnu4HI GCNGC 5 cut(s) 39, 53, 74, 273, 663
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 5 cut(s) 39, 53, 74, 273, 663
FspBI CTAG 2 cut(s) 606, 737
GluI GCNGC 5 cut(s) 39, 53, 74, 273, 663
HaeIII GGCC 3 cut(s) 76, 317, 489
HapII CCGG 1 cut(s) 546
Hin1II CATG 5 cut(s) 82, 379, 436, 514, 526
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 1 cut(s) 575
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 1 cut(s) 546
HphI GGTGA 1 cut(s) 676
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 3 cut(s) 289, 388, 572
Hpy188III TCNNGA 3 cut(s) 62, 523, 532
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 111
HpyAV CCTTC 3 cut(s) 81, 176, 371
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 443
HpyCH4V TGCA 6 cut(s) 129, 226, 302, 503, 665, 711
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 135, 212, 314, 602, 611
HpyF3I CTNAG 4 cut(s) 48, 98, 309, 618
HpySE526I ACGT 1 cut(s) 443
Hsp92II CATG 5 cut(s) 82, 379, 436, 514, 526
Ksp22I TGATCA 2 cut(s) 681, 742
KspAI GTTAAC 1 cut(s) 163
Kzo9I GATC 4 cut(s) 110, 378, 681, 742
LmnI GCTCC 3 cut(s) 173, 203, 389
Lsp1109I GCAGC 3 cut(s) 39, 284, 649
MaeI CTAG 2 cut(s) 606, 737
MaeII ACGT 1 cut(s) 443
MalI GATC 4 cut(s) 112, 380, 683, 744
MbiI CCGCTC 1 cut(s) 206
MboI GATC 4 cut(s) 110, 378, 681, 742
MboII GAAGA 2 cut(s) 511, 686
MfeI CAATTG 1 cut(s) 504
MlsI TGGCCA 2 cut(s) 317, 489
MluCI AATT 5 cut(s) 389, 404, 504, 535, 703
MluNI TGGCCA 2 cut(s) 317, 489
MlyI GAGTC 1 cut(s) 584
MnlI CCTC 5 cut(s) 57, 75, 134, 563, 591
Mox20I TGGCCA 2 cut(s) 317, 489
Mph1103I ATGCAT 1 cut(s) 304
MroXI GAANNNNTTC 3 cut(s) 214, 283, 539
MscI TGGCCA 2 cut(s) 317, 489
MseI TTAA 2 cut(s) 162, 393
Msp20I TGGCCA 2 cut(s) 317, 489
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 1 cut(s) 546
MspR9I CCNGG 1 cut(s) 486
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 6 cut(s) 82, 135, 212, 314, 602, 611
NdeI CATATG 1 cut(s) 699
NdeII GATC 4 cut(s) 110, 378, 681, 742
NlaIII CATG 5 cut(s) 82, 379, 436, 514, 526
NlaIV GGNNCC 1 cut(s) 385
NmeAIII GCCGAG 1 cut(s) 164
NsiI ATGCAT 1 cut(s) 304
PagI TCATGA 1 cut(s) 522
PdmI GAANNNNTTC 3 cut(s) 214, 283, 539
PflMI CCANNNNNTGG 1 cut(s) 120
PkrI GCNGC 5 cut(s) 40, 54, 75, 274, 664
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
Ppu21I YACGTR 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 1 cut(s) 385
PspPI GGNCC 1 cut(s) 75
PstI CTGCAG 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 2 cut(s) 96, 446
RsaNI GTAC 2 cut(s) 95, 445
SaqAI TTAA 2 cut(s) 162, 393
SatI GCNGC 5 cut(s) 39, 53, 74, 273, 663
Sau3AI GATC 4 cut(s) 110, 378, 681, 742
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 1 cut(s) 486
SfcI CTRYAG 1 cut(s) 663
SmlI CTYRAG 1 cut(s) 630
SmoI CTYRAG 1 cut(s) 630
SnaBI TACGTA 1 cut(s) 444
Sse9I AATT 5 cut(s) 389, 404, 504, 535, 703
SsiI CCGC 6 cut(s) 5, 11, 38, 73, 124, 206
SspMI CTAG 2 cut(s) 606, 737
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 1 cut(s) 446
TasI AATT 5 cut(s) 389, 404, 504, 535, 703
TauI GCSGC 2 cut(s) 41, 76
Tru1I TTAA 2 cut(s) 162, 393
Tru9I TTAA 2 cut(s) 162, 393
TscAI CASTG 2 cut(s) 121, 505
TseI GCWGC 3 cut(s) 52, 272, 662
TspDTI ATGAA 4 cut(s) 421, 511, 686, 716
TspRI CASTG 2 cut(s) 121, 505
Van91I CCANNNNNTGG 1 cut(s) 120
XapI RAATTY 3 cut(s) 389, 404, 535
XmnI GAANNNNTTC 3 cut(s) 214, 283, 539
XspI CTAG 2 cut(s) 606, 737
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.