Rh5CG393900

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
51906092 .. 51911596
5505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG393900.1

Sequence Viewer

Length: 3282 bp
ATGTTGGTTGGACCAGCAAAAGCATTTTTCATGGATGAAATATCAACAGGACTGGACAGTTCCACCACCTTTCAGATTGTCAAGTTTATGAGACAGATGGTTCATATCATGGATGTATCAATGGTCATCTCTCTCTTGCAGCCTGCACCTGAGACATATGAGCTTTTTGATGACATTATTCTTATTTCTGAGGGTCAAATTGTCTACCAAGGCCCACGTGAGAATGTTCTTGAGTTTTTTGAACATATGGGATTCAAATGCCCAGATAGAAAGGGTGTTGCTGACTTCTTGCAAGAAGTGACCTCAAAGAAGGATCAAGAACAGTACTGGTATAAGAAGAACCAACCTTACAGATATGTCTCTGTACCTGATTTCGTAAGGGCTTTCACCTCTTTCCATGTTGGTCAACGGCTTGTGGAGGAACTAAGAGTTCCTTATGATAAAAGAACTACACATCCTGCTGCTTTGGTGAAAGAAAGGTATGGAATATCCAACATGGAGCTCTTCAAGGCATGTATGTCAAGGGAATGGCTGCTGATGAAGCGTAACTCTTTTGTGTACATCTTCAAAACTACCCAGATCACAATCATGGCTACAATTGCTTTGACTGTATTCTTAAGAACGGAAATGAAAGCTGGGACAGTAGAAGATTCTGCCAAATTCTGGGGAGCTCTGTTTTTCAGTCTCATTAATGTCATGTTTAACGGAATGGCAGAGCTTGCAATGACAGGTTTCAGGCTTCCTGTCTACTTTAAACAAAGAGATGCCTTGTTCTACCCTGGCTGGGCTTTTGGCTTGCCAATTTGGCTAACCAGAATTCCAATTTCACTGTTGGAATCTGGCATATGGATCATTTTTACATACTACACCATCGGATTTGCTCCCGCAGCCAGTAGGTTCTTTAAACAGTTCTTGGCTTTCTTCGGTATACATCAGATGGCACTCTCCCTCTTCCGTTTCATTGCTGCTCTTGGGAGATCAGAGGTTGTTTCAGGCACAATTGGTTCCTTTACTTTGCTAATGGTGTTTGTCCTAGGAGGTTTCATTGTTGCTAAAGATGACATTGAATCATGGATGATATGGGGCTACTATGTTTCACCTATGATGTACGGACAGAATGCAATTGCTATCAATGAATTTCTGGACAAAAGATGGAGTGCTCCTCTCGTCAACGCAAGTCAACCCACAGTAGGAAAGCTACTTCTCAAGCAAAGAGGCCTCTATACTGAAGAGTATTGGTATTGGATTTGTGTTGGAGCGCTCTTCGCATTTTCTCTTCTGTTTAACGTTCTTTTCATCGCATGCTTGACCTTCTTAGATCCTCTCGGTGAAACTAAAACTTTGATTGAGAATGATGACGCTGAAAGCAACAGGAAGCGACGATCCAATCCTGAAGGTATTGACATGCAAGTGAGAAATGCACAAGGAGGTCAAGCCAAAAGAGGAATGGTCTTGCCTTTCCAGCCCCTTTCACTTGCTTTCAACCATGTGAATTACTATGTGGATATGCCTGCTGAAATGAAAAGCCAAGGGATTGAAGAGACCCGACTGCAACTACTGAGAGATATTAGTGGTGCATTTAGGCCAGGTGTTTTGACTGCATTAGTTGGTGTTAGTGGTGCTGGAAAGACCACCTTGATGGATGTCTTGGCTGGAAGAAAGACAGGGGGGTACATTGAAGGAAGTATTACCATCTCGGGTTATCCAAAGAACCAAGAGACATTTGCTCGGGTCAGCGGTTACTGTGAGCAGAATGACATTCATTCTCCATTTATTACTGTTTATGAATCTCTCTTATACTCTGCATGGCTGCGTCTTGCTAAAGATGTCAAGACGGAGACACGAAAGATGTTTGTTGATGAGGTTATGGACTTGGTCGAGCTTCATCCATTAAGGAATGCTTTAGTTGGACTTCCAGGAGTTGATGGACTTTCGACTGAGCAAAGGAAAAGGCTTACCATTGCTGTGGAATTGGTTGCAAATCCTTCTATCATCTTCATGGATGAGCCAACCTCAGGTCTTGATGCTAGAGCAGCTGCCATTGTTATGCGTACTGTAAGAAACACTGTGGATACAGGACGAACTGTTGTCTGCACAATTCATCAACCTAGCATTGACATTTTTGAAGCTTTTGATGAGCTTTTCTTAATGAAAAGAGGAGGACAAGTGACTTATGCTGGACCTCTAGGTCGCCAATCTCACAAGCTTGTTGAATATTTTGAGGCTATACCAGGGGTTACCAAGATCAAAGACGGTTATAATCCTGCTACCTGGATGTTAGAGGTCAGCTCTTCAGCAATGGAAGCTCAACTTGACATTGACTTCGCAGAAGTATATGCGAACTCTGATCTCTATAGGAGAACTCAGGAACTGATCAAGGAGCTAAGCACACCGGAGCCTGGCTCTAAGGATCTTTACTTCCCCACCCAATACTCACAAAGCTATCTGACTCAATGCAAGGCTTGCTTCTGGAAACAACACTGGTCATACTGGAGAAACTCACGATACAATGCCATTAGGTTTTTCATGACGATTTGCATTGGTGGATTATTTGGTGTTATCTTCTGGAGCAAGGGAGACCAGATCCACAAACAACAGGACTTGATTAATCTTTTGGGAGCTACCTATGCTGCTGTTCTTTTCCTTGGAGCTAGCAATGCTTCTGCTGTGCAATCCGTGGTTGCAGTTGAGAGAACAGTTTTCTACCGTGAAAGAGCAGCGGGAATGTATTCAGAGTTGCCTTACGCATTTGCTCAGGTGGCTATTGAGACAATTTATGTTGCAATCCAAACCTTTATATATTCCTGTATTCTGTATTCCATGATCGGGTACACTTGGAAGGTGGAGAAGTTTTTCTACTTCTACTACTTCATTTTCATGTGCTTTACCTACTTCTCAATGTATGGAATGATGGTGGTTGCCCTAACTCCTGGCCATCAAATTGCTGCAATTGTTATGTCTTTCTTCCTGAGTTTCTGGAACTTGTTCTCTGGTTTCCTCATCCCTAGACCGCTCATTCCCATCTGGTGGAGGTGGTACTACTGGGGTTCTCCAGTTGCTTGGACCATCTATGGTATCTTCGGATCTCAAGTTGGGGACATGACAGCTGAAATCGATATGCCGACTGGGGATAAAGTAGCAATTAACACATTCGTCAAGGCTTATTTAGGTTATGACTATGACTTCATGATCCCTGTTGTCATTGCTCATGTTGGTTGGGTCCTTCTCTTCTTCTTTGTCTTTGCCTATGGCATCAAGTTCCTCAACTTCCAAAGGAGATAA

Protein Analysis

1093

Amino Acids

124.85

Weight (kDa)

7.19

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane_7 PF19055 47 - 100 4.9e-06 ABC-2 type transporter
ABC2_membrane PF01061 168 - 380 2e-44 ABC-2 type transporter
PDR_assoc PF08370 385 - 449 2.3e-24 Plant PDR ABC transporter associated
ABC_tran PF00005 520 - 672 2.9e-20 ABC transporter
ABC2_membrane PF01061 817 - 1029 2.2e-55 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2259
AasI GACNNNNNNGTC 1 cut(s) 2187
AccB7I CCANNNNNTGG 2 cut(s) 663, 3027
AccBSI CCGCTC 1 cut(s) 3013
AccI GTMKAC 3 cut(s) 204, 747, 928
AciI CCGC 4 cut(s) 885, 1737, 2720, 3011
AclI AACGTT 1 cut(s) 1287
AclWI GGATC 8 cut(s) 321, 857, 1313, 1377, 2418, 2578, 3091, 3184
AcoI YGGCCR 1 cut(s) 2932
AcsI RAATTY 3 cut(s) 659, 816, 1136
AcuI CTGAAG 3 cut(s) 1248, 1413, 2277
AcvI CACGTG 1 cut(s) 218
AfaI GTAC 8 cut(s) 326, 366, 560, 1109, 1673, 2053, 2831, 3038
AfeI AGCGCT 1 cut(s) 1260
AfiI CCNNNNNNNGG 7 cut(s) 663, 784, 1190, 2015, 2399, 2826, 3027
AflII CTTAAG 1 cut(s) 616
AjnI CCWGG 7 cut(s) 778, 1585, 1915, 2230, 2270, 2398, 2929
AloI GAACNNNNNNTCC 2 cut(s) 439, 471
Alw21I GWGCWC 3 cut(s) 504, 673, 1162
Alw26I GTCTC 9 cut(s) 85, 146, 364, 689, 1535, 1712, 1832, 2571, 2762
AlwI GGATC 8 cut(s) 321, 857, 1313, 1377, 2418, 2578, 3091, 3184
AlwNI CAGNNNCTG 1 cut(s) 2371
Ama87I CYCGRG 2 cut(s) 1696, 1728
Aor51HI AGCGCT 1 cut(s) 1260
AoxI GGCC 4 cut(s) 211, 1216, 1583, 2932
ApoI RAATTY 3 cut(s) 659, 816, 1136
ArsI GACNNNNNNTTYG 2 cut(s) 2306, 2338
AseI ATTAAT 2 cut(s) 690, 2607
Asp700I GAANNNNTTC 3 cut(s) 2728, 2852, 2984
AspA2I CCTAGG 1 cut(s) 1033
AspLEI GCGC 1 cut(s) 1261
AspS9I GGNCC 5 cut(s) 11, 212, 2180, 3063, 3220
AsuHPI GGTGA 4 cut(s) 379, 481, 1089, 1340
AsuNHI GCTAGC 1 cut(s) 2651
AvaI CYCGRG 2 cut(s) 1696, 1728
AvaII GGWCC 4 cut(s) 11, 2180, 3063, 3220
AvrII CCTAGG 1 cut(s) 1033
AxyI CCTNAGG 1 cut(s) 2014
BalI TGGCCA 1 cut(s) 2934
BanII GRGCYC 2 cut(s) 504, 673
BarI GAAGNNNNNNTAC 2 cut(s) 2840, 2872
BbrPI CACGTG 1 cut(s) 218
Bbv12I GWGCWC 3 cut(s) 504, 673, 1162
BceAI ACGGC 1 cut(s) 425
BciT130I CCWGG 7 cut(s) 780, 1587, 1917, 2232, 2272, 2400, 2931
BciVI GTATCC 1 cut(s) 2065
BclI TGATCA 1 cut(s) 2373
BcoDI GTCTC 9 cut(s) 85, 146, 364, 689, 1535, 1712, 1832, 2571, 2762
BfaI CTAG 6 cut(s) 1034, 2028, 2109, 2186, 2652, 3006
BfmI CTRYAG 1 cut(s) 2353
BfoI RGCGCY 1 cut(s) 1262
BfrI CTTAAG 1 cut(s) 616
BfuI GTATCC 1 cut(s) 2065
BglI GCCNNNNNGGC 1 cut(s) 805
BlnI CCTAGG 1 cut(s) 1033
BlpI GCTNAGC 1 cut(s) 2384
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 7 cut(s) 780, 1587, 1917, 2232, 2272, 2400, 2931
Bme18I GGWCC 4 cut(s) 11, 2180, 3063, 3220
BmeT110I CYCGRG 2 cut(s) 1696, 1728
BmgT120I GGNCC 5 cut(s) 11, 212, 2180, 3063, 3220
BmiI GGNNCC 3 cut(s) 1006, 2397, 3221
BmrFI CCNGG 7 cut(s) 780, 1587, 1917, 2232, 2272, 2400, 2931
BmrI ACTGGG 2 cut(s) 3052, 3135
BmsI GCATC 3 cut(s) 754, 2014, 3261
BmtI GCTAGC 1 cut(s) 2655
BmuI ACTGGG 2 cut(s) 3052, 3135
BplI GAGNNNNNCTC 8 cut(s) 1147, 1179, 1997, 2029, 2273, 2305, 2387, 2419
BpmI CTGGAG 3 cut(s) 2512, 2587, 3036
Bpu10I CCTNAGC 1 cut(s) 2754
Bpu1102I GCTNAGC 1 cut(s) 2384
BpuEI CTTGAG 3 cut(s) 251, 1190, 3072
Bsa29I ATCGAT 1 cut(s) 3114
BsaAI YACGTR 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 584
BsaI GGTCTC 2 cut(s) 1535, 2571
BsaJI CCNNGG 7 cut(s) 208, 778, 1033, 1528, 2231, 2644, 2676
BsaWI WCCGGW 1 cut(s) 2392
BsaXI ACNNNNNCTCC 2 cut(s) 2151, 2181
Bsc4I CCNNNNNNNGG 7 cut(s) 663, 784, 1190, 2015, 2399, 2826, 3027
Bse1I ACTGG 8 cut(s) 57, 332, 891, 2486, 2495, 3047, 3053, 3130
Bse21I CCTNAGG 1 cut(s) 2014
Bse3DI GCAATG 6 cut(s) 729, 960, 1959, 2304, 2662, 3201
Bse8I GATNNNNATC 1 cut(s) 584
BseBI CCWGG 7 cut(s) 780, 1587, 1917, 2232, 2272, 2400, 2931
BseCI ATCGAT 1 cut(s) 3114
BseDI CCNNGG 7 cut(s) 208, 778, 1033, 1528, 2231, 2644, 2676
BseGI GGATG 9 cut(s) 40, 118, 454, 1080, 1648, 1885, 2008, 2280, 3000
BseJI GATNNNNATC 1 cut(s) 584
BseLI CCNNNNNNNGG 7 cut(s) 663, 784, 1190, 2015, 2399, 2826, 3027
BseMI GCAATG 6 cut(s) 729, 960, 1959, 2304, 2662, 3201
BseMII CTCAG 8 cut(s) 141, 180, 1550, 1929, 2028, 2378, 2768, 2960
BseNI ACTGG 8 cut(s) 57, 332, 891, 2486, 2495, 3047, 3053, 3130
BseRI GAGGAG 2 cut(s) 1152, 2172
BseYI CCCAGC 2 cut(s) 635, 783
BsgI GTGCAG 2 cut(s) 129, 2077
BshFI GGCC 4 cut(s) 213, 1218, 1585, 2934
BshVI ATCGAT 1 cut(s) 3114
BsiHKAI GWGCWC 3 cut(s) 504, 673, 1162
BsiHKCI CYCGRG 2 cut(s) 1696, 1728
BsiSI CCGG 1 cut(s) 2393
BslFI GGGAC 2 cut(s) 652, 3110
BslI CCNNNNNNNGG 7 cut(s) 663, 784, 1190, 2015, 2399, 2826, 3027
BsmAI GTCTC 9 cut(s) 85, 146, 364, 689, 1535, 1712, 1832, 2571, 2762
BsmFI GGGAC 2 cut(s) 652, 3110
BsmI GAATGC 2 cut(s) 1123, 1903
BsnI GGCC 4 cut(s) 213, 1218, 1585, 2934
Bso31I GGTCTC 2 cut(s) 1535, 2571
BsoBI CYCGRG 2 cut(s) 1696, 1728
Bsp1286I GDGCHC 3 cut(s) 504, 673, 1162
Bsp1407I TGTACA 1 cut(s) 558
Bsp1720I GCTNAGC 1 cut(s) 2384
BspACI CCGC 4 cut(s) 885, 1737, 2720, 3011
BspANI GGCC 4 cut(s) 213, 1218, 1585, 2934
BspCNI CTCAG 8 cut(s) 142, 181, 1551, 1930, 2027, 2377, 2767, 2961
BspDI ATCGAT 1 cut(s) 3114
BspHI TCATGA 2 cut(s) 2526, 3186
BspLI GGNNCC 3 cut(s) 1006, 2397, 3221
BspOI GCTAGC 1 cut(s) 2655
BspPI GGATC 8 cut(s) 321, 857, 1313, 1377, 2418, 2578, 3091, 3184
BspQI GCTCTTC 3 cut(s) 509, 1268, 2296
BspTI CTTAAG 1 cut(s) 616
BspTNI GGTCTC 2 cut(s) 1535, 2571
BsrBI CCGCTC 1 cut(s) 3013
BsrDI GCAATG 6 cut(s) 729, 960, 1959, 2304, 2662, 3201
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 8 cut(s) 57, 332, 891, 2486, 2495, 3047, 3053, 3130
BssECI CCNNGG 7 cut(s) 208, 778, 1033, 1528, 2231, 2644, 2676
BssNAI GTATAC 1 cut(s) 929
BssT1I CCWWGG 4 cut(s) 208, 1033, 1528, 2644
Bst1107I GTATAC 1 cut(s) 929
Bst2UI CCWGG 7 cut(s) 780, 1587, 1917, 2232, 2272, 2400, 2931
Bst6I CTCTTC 8 cut(s) 509, 956, 1224, 1268, 1281, 1533, 2296, 3233
BstAFI CTTAAG 1 cut(s) 616
BstAPI GCANNNNNTGC 2 cut(s) 719, 2463
BstAUI TGTACA 1 cut(s) 558
BstBAI YACGTR 1 cut(s) 218
BstC8I GCNNGC 7 cut(s) 144, 720, 797, 1303, 1512, 2464, 2653
BstDSI CCRYGG 1 cut(s) 2676
BstEII GGTNACC 1 cut(s) 2236
BstF5I GGATG 9 cut(s) 40, 118, 454, 1080, 1648, 1885, 2008, 2280, 3000
BstH2I RGCGCY 1 cut(s) 1262
BstHHI GCGC 1 cut(s) 1261
BstMAI GTCTC 9 cut(s) 85, 146, 364, 689, 1535, 1712, 1832, 2571, 2762
BstNI CCWGG 7 cut(s) 780, 1587, 1917, 2232, 2272, 2400, 2931
BstNSI RCATGY 3 cut(s) 516, 1305, 1408
BstPI GGTNACC 1 cut(s) 2236
BstSCI CCNGG 7 cut(s) 778, 1585, 1915, 2230, 2270, 2398, 2929
BstSFI CTRYAG 1 cut(s) 2353
BstX2I RGATCY 4 cut(s) 1318, 2410, 2583, 3083
BstXI CCANNNNNNTGG 3 cut(s) 1639, 1966, 3060
BstYI RGATCY 4 cut(s) 1318, 2410, 2583, 3083
BstZ17I GTATAC 1 cut(s) 929
Bsu15I ATCGAT 1 cut(s) 3114
Bsu36I CCTNAGG 1 cut(s) 2014
BsuI GTATCC 1 cut(s) 2065
BsuRI GGCC 4 cut(s) 213, 1218, 1585, 2934
BsuTUI ATCGAT 1 cut(s) 3114
BtgI CCRYGG 1 cut(s) 2676
BtgZI GCGATG 1 cut(s) 1282
BtsCI GGATG 9 cut(s) 40, 118, 454, 1080, 1648, 1885, 2008, 2280, 3000
BtsIMutI CAGTG 3 cut(s) 827, 2064, 2479
Cac8I GCNNGC 7 cut(s) 144, 720, 797, 1303, 1512, 2464, 2653
CaiI CAGNNNCTG 1 cut(s) 2371
CciI TCATGA 2 cut(s) 2526, 3186
CfoI GCGC 1 cut(s) 1261
Cfr13I GGNCC 5 cut(s) 11, 212, 2180, 3063, 3220
ClaI ATCGAT 1 cut(s) 3114
CseI GACGC 2 cut(s) 1367, 1802
Csp6I GTAC 8 cut(s) 325, 365, 559, 1108, 1672, 2052, 2830, 3037
CviQI GTAC 8 cut(s) 325, 365, 559, 1108, 1672, 2052, 2830, 3037
DraI TTTAAA 2 cut(s) 754, 904
DrdI GACNNNNNNGTC 1 cut(s) 2187
DseDI GACNNNNNNGTC 1 cut(s) 2187
EaeI YGGCCR 1 cut(s) 2932
Eam1104I CTCTTC 8 cut(s) 509, 956, 1224, 1268, 1281, 1533, 2296, 3233
EarI CTCTTC 8 cut(s) 509, 956, 1224, 1268, 1281, 1533, 2296, 3233
Ecl136II GAGCTC 2 cut(s) 502, 671
Eco130I CCWWGG 4 cut(s) 208, 1033, 1528, 2644
Eco147I AGGCCT 1 cut(s) 1218
Eco24I GRGCYC 2 cut(s) 504, 673
Eco31I GGTCTC 2 cut(s) 1535, 2571
Eco47I GGWCC 4 cut(s) 11, 2180, 3063, 3220
Eco47III AGCGCT 1 cut(s) 1260
Eco53kI GAGCTC 2 cut(s) 502, 671
Eco57I CTGAAG 3 cut(s) 1248, 1413, 2277
Eco72I CACGTG 1 cut(s) 218
Eco81I CCTNAGG 1 cut(s) 2014
Eco88I CYCGRG 2 cut(s) 1696, 1728
Eco91I GGTNACC 1 cut(s) 2236
EcoICRI GAGCTC 2 cut(s) 502, 671
EcoO109I RGGNCCY 1 cut(s) 3220
EcoO65I GGTNACC 1 cut(s) 2236
EcoRI GAATTC 1 cut(s) 816
EcoRII CCWGG 7 cut(s) 778, 1585, 1915, 2230, 2270, 2398, 2929
EcoT14I CCWWGG 4 cut(s) 208, 1033, 1528, 2644
EcoT38I GRGCYC 2 cut(s) 504, 673
ErhI CCWWGG 4 cut(s) 208, 1033, 1528, 2644
FaqI GGGAC 2 cut(s) 652, 3110
FauI CCCGC 2 cut(s) 892, 2713
FauNDI CATATG 3 cut(s) 157, 246, 845
FbaI TGATCA 1 cut(s) 2373
FblI GTMKAC 3 cut(s) 204, 747, 928
FokI GGATG 9 cut(s) 47, 125, 441, 1087, 1655, 1872, 2015, 2287, 2987
FriOI GRGCYC 2 cut(s) 504, 673
FspBI CTAG 6 cut(s) 1034, 2028, 2109, 2186, 2652, 3006
GlaI GCGC 1 cut(s) 1260
GsaI CCCAGC 2 cut(s) 639, 787
GsuI CTGGAG 3 cut(s) 2512, 2587, 3036
HaeII RGCGCY 1 cut(s) 1262
HaeIII GGCC 4 cut(s) 213, 1218, 1585, 2934
HapII CCGG 1 cut(s) 2393
HgaI GACGC 2 cut(s) 1367, 1802
HhaI GCGC 1 cut(s) 1261
Hin6I GCGC 1 cut(s) 1259
HinP1I GCGC 1 cut(s) 1259
HincII GTYRAC 3 cut(s) 407, 1171, 1181
HindII GTYRAC 3 cut(s) 407, 1171, 1181
HindIII AAGCTT 2 cut(s) 2127, 2204
HinfI GANTC 6 cut(s) 252, 650, 836, 1067, 1787, 2449
HpaII CCGG 1 cut(s) 2393
HphI GGTGA 4 cut(s) 379, 481, 1089, 1340
Hpy166II GTNNAC 8 cut(s) 205, 407, 559, 748, 929, 1171, 1181, 2832
Hpy188I TCNGA 9 cut(s) 75, 190, 875, 936, 982, 2347, 2448, 2734, 3083
Hpy8I GTNNAC 8 cut(s) 205, 407, 559, 748, 929, 1171, 1181, 2832
Hpy99I CGWCG 1 cut(s) 1383
HpyAV CCTTC 7 cut(s) 304, 1321, 1388, 1673, 1995, 2833, 3233
HpyCH4IV ACGT 2 cut(s) 217, 1287
HpySE526I ACGT 2 cut(s) 217, 1287
HspAI GCGC 1 cut(s) 1259
Ksp22I TGATCA 1 cut(s) 2373
LguI GCTCTTC 3 cut(s) 509, 1268, 2296
LweI GCATC 3 cut(s) 754, 2014, 3261
MaeI CTAG 6 cut(s) 1034, 2028, 2109, 2186, 2652, 3006
MaeII ACGT 2 cut(s) 217, 1287
MaeIII GTNAC 5 cut(s) 298, 545, 1739, 2167, 2236
MbiI CCGCTC 1 cut(s) 3013
MfeI CAATTG 4 cut(s) 597, 999, 1122, 2949
MflI RGATCY 4 cut(s) 1318, 2410, 2583, 3083
MhlI GDGCHC 3 cut(s) 504, 673, 1162
MlsI TGGCCA 1 cut(s) 2934
MluNI TGGCCA 1 cut(s) 2934
MlyI GAGTC 1 cut(s) 2443
MmeI TCCRAC 4 cut(s) 516, 813, 1234, 1888
Mox20I TGGCCA 1 cut(s) 2934
MroXI GAANNNNTTC 3 cut(s) 2728, 2852, 2984
MscI TGGCCA 1 cut(s) 2934
MslI CAYNNNNRTG 7 cut(s) 587, 1409, 1637, 1964, 1997, 2045, 2876
Msp20I TGGCCA 1 cut(s) 2934
MspA1I CMGCKG 4 cut(s) 1737, 2036, 2720, 3107
MspCI CTTAAG 1 cut(s) 616
MspI CCGG 1 cut(s) 2393
MspR9I CCNGG 7 cut(s) 780, 1587, 1917, 2232, 2272, 2400, 2931
MunI CAATTG 4 cut(s) 597, 999, 1122, 2949
Mva1269I GAATGC 2 cut(s) 1123, 1903
MvaI CCWGG 7 cut(s) 780, 1587, 1917, 2232, 2272, 2400, 2931
NdeI CATATG 3 cut(s) 157, 246, 845
NheI GCTAGC 1 cut(s) 2651
NlaIV GGNNCC 3 cut(s) 1006, 2397, 3221
NmuCI GTSAC 2 cut(s) 298, 2167
NspI RCATGY 3 cut(s) 516, 1305, 1408
PaeI GCATGC 1 cut(s) 1305
PagI TCATGA 2 cut(s) 2526, 3186
PceI AGGCCT 1 cut(s) 1218
PciSI GCTCTTC 3 cut(s) 509, 1268, 2296
PctI GAATGC 2 cut(s) 1123, 1903
PdmI GAANNNNTTC 3 cut(s) 2728, 2852, 2984
PfeI GAWTC 5 cut(s) 252, 650, 836, 1067, 1787
PflFI GACNNNGTC 1 cut(s) 1874
PflMI CCANNNNNTGG 2 cut(s) 663, 3027
PfoI TCCNGGA 1 cut(s) 1915
PleI GAGTC 1 cut(s) 2443
PmaCI CACGTG 1 cut(s) 218
PmlI CACGTG 1 cut(s) 218
PpsI GAGTC 1 cut(s) 2443
Ppu21I YACGTR 1 cut(s) 218
PpuMI RGGWCCY 1 cut(s) 3220
PshBI ATTAAT 2 cut(s) 690, 2607
PsiI TTATAA 1 cut(s) 2259
Psp124BI GAGCTC 2 cut(s) 504, 673
Psp1406I AACGTT 1 cut(s) 1287
Psp5II RGGWCCY 1 cut(s) 3220
Psp6I CCWGG 7 cut(s) 778, 1585, 1915, 2230, 2270, 2398, 2929
PspCI CACGTG 1 cut(s) 218
PspEI GGTNACC 1 cut(s) 2236
PspFI CCCAGC 2 cut(s) 635, 783
PspGI CCWGG 7 cut(s) 778, 1585, 1915, 2230, 2270, 2398, 2929
PspN4I GGNNCC 3 cut(s) 1006, 2397, 3221
PspPI GGNCC 5 cut(s) 11, 212, 2180, 3063, 3220
PspPPI RGGWCCY 1 cut(s) 3220
PsrI GAACNNNNNNTAC 2 cut(s) 332, 364
PstNI CAGNNNCTG 1 cut(s) 2371
PsuI RGATCY 4 cut(s) 1318, 2410, 2583, 3083
PsyI GACNNNGTC 1 cut(s) 1874
PvuII CAGCTG 2 cut(s) 2036, 3107
RsaI GTAC 8 cut(s) 326, 366, 560, 1109, 1673, 2053, 2831, 3038
RsaNI GTAC 8 cut(s) 325, 365, 559, 1108, 1672, 2052, 2830, 3037
RseI CAYNNNNRTG 7 cut(s) 587, 1409, 1637, 1964, 1997, 2045, 2876
SacI GAGCTC 2 cut(s) 504, 673
SapI GCTCTTC 3 cut(s) 509, 1268, 2296
Sau96I GGNCC 5 cut(s) 11, 212, 2180, 3063, 3220
ScaI AGTACT 1 cut(s) 326
SchI GAGTC 1 cut(s) 2443
ScrFI CCNGG 7 cut(s) 780, 1587, 1917, 2232, 2272, 2400, 2931
SduI GDGCHC 3 cut(s) 504, 673, 1162
SfaNI GCATC 3 cut(s) 754, 2014, 3261
SfcI CTRYAG 1 cut(s) 2353
SinI GGWCC 4 cut(s) 11, 2180, 3063, 3220
SmiMI CAYNNNNRTG 7 cut(s) 587, 1409, 1637, 1964, 1997, 2045, 2876
SmlI CTYRAG 4 cut(s) 230, 616, 1205, 3087
SmoI CTYRAG 4 cut(s) 230, 616, 1205, 3087
SphI GCATGC 1 cut(s) 1305
SseBI AGGCCT 1 cut(s) 1218
SsiI CCGC 4 cut(s) 885, 1737, 2720, 3011
SspI AATATT 1 cut(s) 2216
SspMI CTAG 6 cut(s) 1034, 2028, 2109, 2186, 2652, 3006
SstI GAGCTC 2 cut(s) 504, 673
StuI AGGCCT 1 cut(s) 1218
StyD4I CCNGG 7 cut(s) 778, 1585, 1915, 2230, 2270, 2398, 2929
StyI CCWWGG 4 cut(s) 208, 1033, 1528, 2644
TaiI ACGT 2 cut(s) 220, 1290
TaqI TCGA 3 cut(s) 1878, 1934, 3114
TatI WGTACW 2 cut(s) 324, 558
TfiI GAWTC 5 cut(s) 252, 650, 836, 1067, 1787
TscAI CASTG 3 cut(s) 834, 2071, 2486
TseFI GTSAC 2 cut(s) 298, 2167
Tsp45I GTSAC 2 cut(s) 298, 2167
TspGWI ACGGA 6 cut(s) 638, 720, 944, 1125, 1850, 2665
TspRI CASTG 3 cut(s) 834, 2071, 2486
Tth111I GACNNNGTC 1 cut(s) 1874
Van91I CCANNNNNTGG 2 cut(s) 663, 3027
Vha464I CTTAAG 1 cut(s) 616
VpaK11BI GGWCC 4 cut(s) 11, 2180, 3063, 3220
VspI ATTAAT 2 cut(s) 690, 2607
XapI RAATTY 3 cut(s) 659, 816, 1136
XceI RCATGY 3 cut(s) 516, 1305, 1408
XcmI CCANNNNNNNNNTGG 1 cut(s) 1444
XmaJI CCTAGG 1 cut(s) 1033
XmiI GTMKAC 3 cut(s) 204, 747, 928
XmnI GAANNNNTTC 3 cut(s) 2728, 2852, 2984
XspI CTAG 6 cut(s) 1034, 2028, 2109, 2186, 2652, 3006
ZrmI AGTACT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.