MD11G1159000.v1.1

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
15479066 .. 15486366
7301 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1159000.v1.1.491

Sequence Viewer

Length: 4314 bp
ATGGCGGGAGCATTCGCCGGAGATGGCCTGGTGCGGTCTGCAAGTAGCATGAGTTGGCGGTCAATAAGCATAAAAGATATGTGGAATGAGCAGCCAGACGTGTTCCAGAGGAGCAGGGCCGGCGAAGAGGAGGAGGAGCTTAGGTGGGCGGCGATAGAGCGGCTACCAACGTATGATAGGCTGCGGAAGGGGATTTTGAGGAAGGTGATGAGCAATGGTAGGGTGGAGCATGGTGAGGTTGAAATTACTAAGCTTAAGACTGAAGATAAGAAGCAGTTGATGGACAGCATATTAAAAATTGTTGAGGAAGATAATGAGAAGCTCCTTAAGAGGATTAGAGACAGAACTGACAGGGTGGGAATTGAGGTTCCTAAGATTGAAGTGAGATTTGAGCACCTATCAGCGGAGGGAGATGCATATGTTGGGACCAGGGCACTTCCAACTCTGATCAATTCCACCTTAAATGCAATTGAGGGGGTTCTTGGACTGGTTGGGCTCTCTCCTTCAAAGAAAAGGGTAGTCAAGATACTTCAAGATGTTAGTGGAATAGTGAGACCATCAAGAATGTGTCTACTTCTTGGACCGCCTGCCTCCGGAAAAACAACATTCTTGAAGGCACTTACTGGGCAGCTTGATGATGATCTAAGGGTAACTGGGAAAATCACCTATTGTGGCCATGAGTTGTCTGAATTTGTTCCTCAGAGAACTAGTGCTTATATTAGCCAGCATGATCTTCACTACGGTGAGATGACAGTTCGGGAGACTTTGGATTTCTCTGGACGTTGCCTTGGAGTTGGAACCAGGTACGAAATGTTGGTAGAGGCATCAAGGTGCGAGAAAGCACAAGGTATACAACCAGATCCTGAGATCGACGCATTCATGAAAGCCACAGCAGTGGCTGGCCAGAAAACAAGTTTGATCACAGATTATTTTCTCAAGATACTTGGATTGGATATTTGTGCGGATATTATGGTGGGCAATGACATGAAACGGGGCATCTCTGGAGGGCAAAAGAAGCGTGTCACTACCGGGGAAATGTTAGTTGGGCCGGCTAGAGCATTTTTCATGGATGAAATATCAACAGGCTTGGACAGTTCCACCACATTTCAGATAATAAAGTACATGAAGCAGATGGTTCATATCATGGACCTCACGATGGTCATTTCTCTTCTGCAGCCTGCGCCGGAGACATTTGACCTTTTCGATGACATTATTCTACTTTCAGAGGGTCAAATTGTTTACCAAGGTTCTCGCGAGAATGTTCTTGAATTTTTCGAACATATGGGCTTCAAATGCCCACAAAGGAAAGGTGTTGCCGACTTTCTGCAAGAAGTAACTTCCAAGAAGGACCAAGAACAATACTGGTTTAGAAAGAATCAACCTTACAGATATATCCCCGTAGCTGAGTTTGCTCAGGCCTTCAAATCCTTCCACATTTTCCAAAGGATTTCTGAAGATCTGAGAGTTCCTTATGACAGATCGAATGTACATCCTGCTGCTTTGGTGAGACAAAAGTACGGAATCTCCAACTGGGAACTCTTGAAGGCCTGCTTCTCGAGGGAATGGCTGCTGATGAAGCGCAATTCATTCGTGTATATTTTCAAAACTGTGCAGTTAACAATCATGGCTACGATCGCATTCACTGTGTTCCTAAGAACGCAAATGAAAGCGGGTCACTTAGAAGATGCACCAAAGTTTTGGGGAGCACTGTTTTTCAGTCTCATCAATGTCATGTTCAACGGGATGGCAGAGCTTGCGATGACAGTTATGAGGCTTCCTGTGTTCTTTAAACAGAGGGATGCCTTGTTCTATCCAGGATGGGCTTTTGGCTTGCCCATTTGGCTCCTCAGAATTCCCATATCACTGATGGAATCAGCCATTTGGATCATTCTTACGTATTACACAATTGGTTTTGCACCTGCTGCGAGTAGGTTTTTCAAACAATTCTTGGCCTTGTTCGGAGTGCATCAGATGGCCCTTTCCCTCTTCCGTTTCCTTGCAGCTGTCGGAAGAACAGAAATAGTTGCAAGCACAATTGGCACCTTTACCTTGCTAATGGTCTTTGTGCTTGGAGGTTTCATAGTTTCCAAAAATGACATCAAACCATGGATGATTTGGGGCTACTATATTTCTCCTATGATGTATGGTCAAAACGCCATCGCTATCAATGAGTTTCTCGACAAAAGATGGAGCACTCCCATAAATGGTTCTAGCCAACCAACAGTCGGAAAGACCCTCCTTAAGGAAAGAGGACTGTTTGTAGATGAATACTGGTACTGGATTTGCATTGGAGCACTTCTTGGATATTCTCTTCTTTTCAACATTGGTTTCATTGCAGCACTGACATTTTTAAAGCCACTCGTTGATTCTAAAGCTGTCATCGCGGATGAAAACTCTGAAAGAAAAACGAAGAAACAGTTGACAGGTACTGATAACTCAGCAGGTACCAGTTCTTCAAACAATGAAGCTAGAAGAGGAATGATGTTGCCCTTCCATCCTCTTTCACTTGCTTTTAACCATGTGAATTACTACGTGGACATGCCTGCCGAAATGAAGAGTCAAGGGGTTGAAGAGACCAGACTGCAACTGCTACGAGATGTCAGTGGTGCTTTCAGGCCTGGTGTTCTAACCGCATTAGTAGGGGTCAGCGGTGCTGGGAAGACAACCTTGATGGATGTCTTATCCGGAAGGAAGACTGGCGGGTACATTGAGGGAAGTATAAGCATTTCTGGGTACCCAAAAAACCAAGCTACATTTGCTCGAGTTAGCGGTTATTGTGAACAAAATGACATCCATTCCCCCTATGTGACTGTCTACGAATCTCTTTTATATTCTTCGTGGTTGCGTCTTGCTTCAGATGTAAAGAAGGAAACACGAAAGATGTTTGTTGAAGAAGTGATGGAACTCATTGAACTTAACCCGTTGAGGAATGCTTTAGTCGGACTTCCAGGAGTAGATGGTCTTTCGACTGAACAGAGAAAGAGGCTCACAATAGCTGTAGAATTGGTTGCTAATCCTTCCATTATCTTTATGGATGAACCCACATCAGGACTTGATGCTAGAGCTGCTGCAATTGTGATGCGCGCAGTAAGGAACACGGTAGATACTGGTCGAACTGTAGTGTGCACAATCCACCAACCAAGCATTGATATCTTTGAATCCTTTGATGAGCTACTTTTGATGAAAAGAGGAGGAAGAGTTATTTATGCAGGACCACTAGGTAGTAATTCTCATAAACTTGTGGAGTATTTTGAGGCTATTGAAGGGGTTCAGAAAATAAAAGAGGGTTACAATCCTGCGACATGGATGCTAGAGATCAGCTCCACTGCAGTTGAGGCACAACTTAACCTTGATTTCTCTGAAGTTTATGCCAATTCCGACCTCTATCAGAGGAATCAGGAGCTCATCAAGGAGCTAAGCACTCCGCAACCAGGTTCCAAGGATCTTCACTTCCCGACCAAGTACTCGCAAAGCTTCATAACTCAGTGCAAGGCTTGTTTCTGGAAACAACAGTGGTCTTACTGGAGGAATTCGCAGTACAATGCAATCCGGTTTTTCATGACAATTGTTATCGGTATCTTATTCGGTGTAATCTTTTGGGGCAAAGGAAGCCAGATACACAAACAACAAGACCTGATTAATCTATTGGGAGCTACATATTCTGCTGTTCTTTTCCTTGGAGCCTCCAACGCTTCTTCGGTGCAAACTGTTGTGGCAATTGAGAGAACAGTATTTTATCGGGAAAGAGCAGCAGGAATGTATTCCGAGTTGCCATATGCATTTTCTCAGGTGGCTATAGAAACAATTTATGTTGCAATACAAACCTTCATCTATTCTCTTCTACTCTATTCCATGATCGGTTACCACTGGAAGGTCGAGAAGTTCTTGTACTTCTACTACTTCATATTCATGTGCTTCACGTACTTCTCTATGTACGGGATGATGGTCGTTGCACTGACTCCCGGCAGTCAGATTGCTGCCGTTGTTATGTCATTCTTCATCAGCTTCTGGAATTTATTTTCGGGCTTCCTCATTCCCAGGCCGCTAATCCCGATATGGTGGAGGTGGTACTACTGGTGTTCCCCGGTTGCTTGGACAATCTATGGCGTTTTCACATCTCAAGTTGGGGATAAGAAGACGTTACTCGAAATTCCTGGCTCAGCGCCAAAGCCGGTGGATGCATTCCTTAAGGAGTACTTGGGATATGACTATGATTTCCTTGTAGCAGTAGTCTTTGCACATCTCGGTTGGGTGCTCCTCTTCTTCTTCATCTTTGCCTACGGCATCAGGTTTCTTAACTTTCAAAAGAGATAG

Protein Analysis

1438

Amino Acids

163.03

Weight (kDa)

8.64

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 102 - 151 8.5e-09 ABC-transporter N-terminal
ABC_tran PF00005 177 - 358 2.2e-12 ABC transporter
ABC2_membrane_7 PF19055 392 - 444 9.7e-06 ABC-2 type transporter
ABC2_membrane PF01061 513 - 725 8.7e-47 ABC-2 type transporter
PDR_assoc PF08370 730 - 794 1.5e-26 Plant PDR ABC transporter associated
ABC_tran PF00005 864 - 1016 8.7e-20 ABC transporter
ABC2_membrane PF01061 1161 - 1372 1.2e-55 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1927
Acc36I ACCTGC 2 cut(s) 1927, 2432
Acc65I GGTACC 2 cut(s) 2444, 2733
AccB1I GGYRCC 3 cut(s) 2039, 2444, 2733
AccBSI CCGCTC 1 cut(s) 160
AccI GTMKAC 3 cut(s) 571, 850, 2814
AccII CGCG 3 cut(s) 1254, 2384, 3084
AccIII TCCGGA 2 cut(s) 593, 2684
AclWI GGATC 3 cut(s) 854, 1892, 3450
AcoI YGGCCR 2 cut(s) 673, 901
AcsI RAATTY 6 cut(s) 689, 1268, 1851, 3529, 4012, 4149
AcuI CTGAAG 4 cut(s) 282, 1473, 2838, 3381
AfiI CCNNNNNNNGG 9 cut(s) 403, 593, 1156, 2204, 2225, 2242, 3047, 3431, 3871
AflII CTTAAG 4 cut(s) 254, 326, 2240, 4187
AflIII ACRYGT 1 cut(s) 99
AhlI ACTAGT 1 cut(s) 707
AjiI CACGTC 1 cut(s) 100
AjnI CCWGG 9 cut(s) 27, 428, 800, 1813, 2617, 2947, 3430, 4037, 4153
AjuI GAANNNNNNNTTGG 2 cut(s) 1026, 1058
AleI CACNNNNGTG 2 cut(s) 741, 893
AloI GAACNNNNNNTCC 4 cut(s) 351, 383, 1790, 1822
Alw21I GWGCWC 7 cut(s) 396, 1708, 2195, 2296, 3128, 3405, 4257
Alw26I GTCTC 7 cut(s) 333, 547, 755, 1181, 1501, 1724, 2567
Alw44I GTGCAC 1 cut(s) 3124
AlwI GGATC 3 cut(s) 854, 1892, 3450
AlwNI CAGNNNCTG 4 cut(s) 863, 899, 2429, 4008
Ama87I CYCGRG 2 cut(s) 1555, 2760
Aor13HI TCCGGA 2 cut(s) 593, 2684
ApaLI GTGCAC 1 cut(s) 3124
ApoI RAATTY 6 cut(s) 689, 1268, 1851, 3529, 4012, 4149
AseI ATTAAT 1 cut(s) 3639
Asp700I GAANNNNTTC 3 cut(s) 693, 3267, 3760
Asp718I GGTACC 2 cut(s) 2444, 2733
AspLEI GCGC 5 cut(s) 1183, 1581, 3084, 3086, 4165
AspS9I GGNCC 8 cut(s) 117, 426, 581, 1046, 1147, 1348, 1975, 3212
AsuC2I CCSGG 3 cut(s) 1030, 3963, 4085
AsuHPI GGTGA 5 cut(s) 217, 245, 655, 755, 1516
AsuII TTCGAA 1 cut(s) 1275
AvaI CYCGRG 2 cut(s) 1555, 2760
AvaII GGWCC 5 cut(s) 426, 581, 1147, 1348, 3212
BaeGI GKGCMC 2 cut(s) 436, 3128
BalI TGGCCA 2 cut(s) 675, 903
BanI GGYRCC 3 cut(s) 2039, 2444, 2733
BanII GRGCYC 2 cut(s) 498, 3405
BarI GAAGNNNNNNTAC 4 cut(s) 2437, 2469, 3872, 3904
BbsI GAAGAC 3 cut(s) 2666, 2699, 4142
Bbv12I GWGCWC 7 cut(s) 396, 1708, 2195, 2296, 3128, 3405, 4257
BceAI ACGGC 2 cut(s) 3965, 4297
BcgI CGANNNNNNTGC 4 cut(s) 1570, 1604, 3289, 3323
BciT130I CCWGG 9 cut(s) 29, 430, 802, 1815, 2619, 2949, 3432, 4039, 4155
BclI TGATCA 2 cut(s) 447, 918
BcnI CCSGG 3 cut(s) 1030, 3963, 4085
BcoDI GTCTC 7 cut(s) 333, 547, 755, 1181, 1501, 1724, 2567
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 7 cut(s) 708, 1053, 2211, 2469, 3060, 3218, 3311
BfmI CTRYAG 5 cut(s) 1172, 2997, 3117, 3327, 3795
BfoI RGCGCY 1 cut(s) 4166
BfrI CTTAAG 4 cut(s) 254, 326, 2240, 4187
BfuAI ACCTGC 2 cut(s) 1927, 2432
BglI GCCNNNNNGGC 1 cut(s) 1840
BglII AGATCT 1 cut(s) 1456
BlpI GCTNAGC 2 cut(s) 3416, 4159
BmcAI AGTACT 2 cut(s) 3464, 4196
Bme18I GGWCC 5 cut(s) 426, 581, 1147, 1348, 3212
BmeT110I CYCGRG 2 cut(s) 1555, 2760
BmgBI CACGTC 1 cut(s) 100
BmgT120I GGNCC 8 cut(s) 117, 426, 581, 1046, 1147, 1348, 1975, 3212
BmiI GGNNCC 9 cut(s) 369, 427, 799, 1844, 2041, 2446, 2735, 3436, 3682
BmrI ACTGGG 3 cut(s) 633, 663, 1540
BmuI ACTGGG 3 cut(s) 633, 663, 1540
BpiI GAAGAC 3 cut(s) 2666, 2699, 4142
BplI GAGNNNNNCTC 2 cut(s) 3305, 3337
BpmI CTGGAG 2 cut(s) 1023, 3544
Bpu10I CCTNAGC 2 cut(s) 140, 1413
Bpu1102I GCTNAGC 2 cut(s) 3416, 4159
Bpu14I TTCGAA 1 cut(s) 1275
BpuEI CTTGAG 2 cut(s) 920, 4104
BpuMI CCSGG 3 cut(s) 1030, 3963, 4085
BsaAI YACGTR 3 cut(s) 1896, 2533, 3921
BsaBI GATNNNNATC 1 cut(s) 639
BsaI GGTCTC 2 cut(s) 547, 2567
BsaJI CCNNGG 9 cut(s) 429, 787, 1029, 1243, 2105, 3438, 3676, 4037, 4083
BsaWI WCCGGW 3 cut(s) 593, 2684, 3549
BsaXI ACNNNNNCTCC 6 cut(s) 128, 158, 1508, 1538, 3183, 3213
Bsc4I CCNNNNNNNGG 9 cut(s) 403, 593, 1156, 2204, 2225, 2242, 3047, 3431, 3871
Bse118I RCCGGY 3 cut(s) 119, 1048, 4171
Bse3DI GCAATG 3 cut(s) 220, 985, 2331
Bse8I GATNNNNATC 1 cut(s) 639
BseAI TCCGGA 2 cut(s) 593, 2684
BseBI CCWGG 9 cut(s) 29, 430, 802, 1815, 2619, 2949, 3432, 4039, 4155
BseDI CCNNGG 9 cut(s) 429, 787, 1029, 1243, 2105, 3438, 3676, 4037, 4083
BseJI GATNNNNATC 1 cut(s) 639
BseLI CCNNNNNNNGG 9 cut(s) 403, 593, 1156, 2204, 2225, 2242, 3047, 3431, 3871
BseMI GCAATG 3 cut(s) 220, 985, 2331
BsePI GCGCGC 1 cut(s) 3082
BseRI GAGGAG 7 cut(s) 124, 143, 146, 149, 1835, 3204, 4247
BseSI GKGCMC 2 cut(s) 436, 3128
BseYI CCCAGC 1 cut(s) 2654
BsgI GTGCAG 1 cut(s) 1631
Bsh1236I CGCG 3 cut(s) 1254, 2384, 3084
Bsh1285I CGRYCG 1 cut(s) 1635
BshNI GGYRCC 3 cut(s) 2039, 2444, 2733
BsiEI CGRYCG 1 cut(s) 1635
BsiHKAI GWGCWC 7 cut(s) 396, 1708, 2195, 2296, 3128, 3405, 4257
BsiHKCI CYCGRG 2 cut(s) 1555, 2760
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 9 cut(s) 403, 593, 1156, 2204, 2225, 2242, 3047, 3431, 3871
BsmAI GTCTC 7 cut(s) 333, 547, 755, 1181, 1501, 1724, 2567
BsmFI GGGAC 1 cut(s) 439
BsmI GAATGC 5 cut(s) 11, 875, 1637, 2935, 4181
Bso31I GGTCTC 2 cut(s) 547, 2567
BsoBI CYCGRG 2 cut(s) 1555, 2760
Bsp119I TTCGAA 1 cut(s) 1275
Bsp1286I GDGCHC 9 cut(s) 396, 436, 498, 1708, 2195, 2296, 3128, 3405, 4257
Bsp13I TCCGGA 2 cut(s) 593, 2684
Bsp1407I TGTACA 1 cut(s) 1486
Bsp1720I GCTNAGC 2 cut(s) 3416, 4159
Bsp19I CCATGG 1 cut(s) 2105
Bsp68I TCGCGA 1 cut(s) 1254
BspEI TCCGGA 2 cut(s) 593, 2684
BspFNI CGCG 3 cut(s) 1254, 2384, 3084
BspHI TCATGA 2 cut(s) 879, 3558
BspLI GGNNCC 9 cut(s) 369, 427, 799, 1844, 2041, 2446, 2735, 3436, 3682
BspMAI CTGCAG 2 cut(s) 1176, 3331
BspMI ACCTGC 2 cut(s) 1927, 2432
BspPI GGATC 3 cut(s) 854, 1892, 3450
BspT104I TTCGAA 1 cut(s) 1275
BspT107I GGYRCC 3 cut(s) 2039, 2444, 2733
BspTI CTTAAG 4 cut(s) 254, 326, 2240, 4187
BspTNI GGTCTC 2 cut(s) 547, 2567
BsrBI CCGCTC 1 cut(s) 160
BsrDI GCAATG 3 cut(s) 220, 985, 2331
BsrFI RCCGGY 3 cut(s) 119, 1048, 4171
BsrGI TGTACA 1 cut(s) 1486
BssAI RCCGGY 3 cut(s) 119, 1048, 4171
BssECI CCNNGG 9 cut(s) 429, 787, 1029, 1243, 2105, 3438, 3676, 4037, 4083
BssHII GCGCGC 1 cut(s) 3082
BssNAI GTATAC 1 cut(s) 851
BssT1I CCWWGG 5 cut(s) 787, 1243, 2105, 3438, 3676
Bst1107I GTATAC 1 cut(s) 851
Bst2UI CCWGG 9 cut(s) 29, 430, 802, 1815, 2619, 2949, 3432, 4039, 4155
BstAFI CTTAAG 4 cut(s) 254, 326, 2240, 4187
BstAPI GCANNNNNTGC 2 cut(s) 1754, 1922
BstAUI TGTACA 1 cut(s) 1486
BstBAI YACGTR 3 cut(s) 1896, 2533, 3921
BstBI TTCGAA 1 cut(s) 1275
BstDSI CCRYGG 1 cut(s) 2105
BstEII GGTNACC 1 cut(s) 3860
BstENI CCTNNNNNAGG 1 cut(s) 2240
BstFNI CGCG 3 cut(s) 1254, 2384, 3084
BstH2I RGCGCY 1 cut(s) 4166
BstHHI GCGC 5 cut(s) 1183, 1581, 3084, 3086, 4165
BstMAI GTCTC 7 cut(s) 333, 547, 755, 1181, 1501, 1724, 2567
BstMCI CGRYCG 1 cut(s) 1635
BstNI CCWGG 9 cut(s) 29, 430, 802, 1815, 2619, 2949, 3432, 4039, 4155
BstNSI RCATGY 1 cut(s) 2542
BstPI GGTNACC 1 cut(s) 3860
BstSFI CTRYAG 5 cut(s) 1172, 2997, 3117, 3327, 3795
BstSLI GKGCMC 2 cut(s) 436, 3128
BstSNI TACGTA 1 cut(s) 1896
BstUI CGCG 3 cut(s) 1254, 2384, 3084
BstV2I GAAGAC 3 cut(s) 2666, 2699, 4142
BstX2I RGATCY 3 cut(s) 859, 1456, 3442
BstXI CCANNNNNNTGG 2 cut(s) 895, 1698
BstYI RGATCY 3 cut(s) 859, 1456, 3442
BstZ17I GTATAC 1 cut(s) 851
BtgI CCRYGG 1 cut(s) 2105
BtgZI GCGATG 3 cut(s) 1772, 2143, 2365
BtrI CACGTC 1 cut(s) 100
BtsI GCAGTG 2 cut(s) 900, 3324
BtuMI TCGCGA 1 cut(s) 1254
BveI ACCTGC 2 cut(s) 1927, 2432
CaiI CAGNNNCTG 4 cut(s) 863, 899, 2429, 4008
CciI TCATGA 2 cut(s) 879, 3558
CfoI GCGC 5 cut(s) 1183, 1581, 3084, 3086, 4165
Cfr10I RCCGGY 3 cut(s) 119, 1048, 4171
Cfr13I GGNCC 8 cut(s) 117, 426, 581, 1046, 1147, 1348, 1975, 3212
CseI GACGC 2 cut(s) 881, 2834
CsiI ACCWGGT 2 cut(s) 800, 3430
CspCI CAANNNNNGTGG 4 cut(s) 3313, 3348, 4155, 4190
DraI TTTAAA 2 cut(s) 1789, 2352
EaeI YGGCCR 2 cut(s) 673, 901
Ecl136II GAGCTC 1 cut(s) 3403
Eco105I TACGTA 1 cut(s) 1896
Eco130I CCWWGG 5 cut(s) 787, 1243, 2105, 3438, 3676
Eco147I AGGCCT 3 cut(s) 1418, 1547, 2617
Eco24I GRGCYC 2 cut(s) 498, 3405
Eco31I GGTCTC 2 cut(s) 547, 2567
Eco32I GATATC 1 cut(s) 3151
Eco47I GGWCC 5 cut(s) 426, 581, 1147, 1348, 3212
Eco53kI GAGCTC 1 cut(s) 3403
Eco57I CTGAAG 4 cut(s) 282, 1473, 2838, 3381
Eco88I CYCGRG 2 cut(s) 1555, 2760
Eco91I GGTNACC 1 cut(s) 3860
EcoICRI GAGCTC 1 cut(s) 3403
EcoNI CCTNNNNNAGG 1 cut(s) 2240
EcoO65I GGTNACC 1 cut(s) 3860
EcoRI GAATTC 2 cut(s) 1851, 3529
EcoRII CCWGG 9 cut(s) 27, 428, 800, 1813, 2617, 2947, 3430, 4037, 4153
EcoRV GATATC 1 cut(s) 3151
EcoT14I CCWWGG 5 cut(s) 787, 1243, 2105, 3438, 3676
EcoT22I ATGCAT 3 cut(s) 418, 3781, 4183
EcoT38I GRGCYC 2 cut(s) 498, 3405
ErhI CCWWGG 5 cut(s) 787, 1243, 2105, 3438, 3676
FalI AAGNNNNNCTT 6 cut(s) 1535, 1567, 2651, 2683, 4181, 4213
FaqI GGGAC 1 cut(s) 439
FauI CCCGC 2 cut(s) 1663, 2693
FauNDI CATATG 3 cut(s) 418, 1281, 3775
FbaI TGATCA 2 cut(s) 447, 918
FblI GTMKAC 3 cut(s) 571, 850, 2814
FriOI GRGCYC 2 cut(s) 498, 3405
FspBI CTAG 7 cut(s) 708, 1053, 2211, 2469, 3060, 3218, 3311
GlaI GCGC 5 cut(s) 1182, 1580, 3083, 3085, 4164
GsaI CCCAGC 1 cut(s) 2658
GsuI CTGGAG 2 cut(s) 1023, 3544
HaeII RGCGCY 1 cut(s) 4166
HgaI GACGC 2 cut(s) 881, 2834
HhaI GCGC 5 cut(s) 1183, 1581, 3084, 3086, 4165
Hin6I GCGC 5 cut(s) 1181, 1579, 3082, 3084, 4163
HinP1I GCGC 5 cut(s) 1181, 1579, 3082, 3084, 4163
HincII GTYRAC 2 cut(s) 1617, 2421
HindII GTYRAC 2 cut(s) 1617, 2421
HindIII AAGCTT 2 cut(s) 251, 3472
HinfI GANTC 9 cut(s) 1375, 1521, 1871, 2366, 2557, 2819, 3158, 3394, 3958
HpaI GTTAAC 1 cut(s) 1617
HphI GGTGA 5 cut(s) 217, 245, 655, 755, 1516
Hpy166II GTNNAC 9 cut(s) 572, 851, 1240, 1617, 2421, 2536, 2780, 2815, 3126
Hpy8I GTNNAC 9 cut(s) 572, 851, 1240, 1617, 2421, 2536, 2780, 2815, 3126
Hpy99I CGWCG 1 cut(s) 875
HpyCH4IV ACGT 7 cut(s) 99, 170, 781, 1895, 2532, 3920, 4139
HpySE526I ACGT 7 cut(s) 99, 170, 781, 1895, 2532, 3920, 4139
HspAI GCGC 5 cut(s) 1181, 1579, 3082, 3084, 4163
Kpn2I TCCGGA 2 cut(s) 593, 2684
KpnI GGTACC 2 cut(s) 2448, 2737
KroI GCCGGC 2 cut(s) 119, 1048
KroNI GCCGGC 2 cut(s) 121, 1050
Ksp22I TGATCA 2 cut(s) 447, 918
KspAI GTTAAC 1 cut(s) 1617
MabI ACCWGGT 2 cut(s) 800, 3430
MaeI CTAG 7 cut(s) 708, 1053, 2211, 2469, 3060, 3218, 3311
MaeII ACGT 7 cut(s) 99, 170, 781, 1895, 2532, 3920, 4139
MaeIII GTNAC 8 cut(s) 649, 1021, 1333, 1673, 2806, 3287, 3860, 4140
MbiI CCGCTC 1 cut(s) 160
MfeI CAATTG 6 cut(s) 468, 1905, 2034, 3072, 3564, 3717
MflI RGATCY 3 cut(s) 859, 1456, 3442
MhlI GDGCHC 9 cut(s) 396, 436, 498, 1708, 2195, 2296, 3128, 3405, 4257
MlsI TGGCCA 2 cut(s) 675, 903
MluNI TGGCCA 2 cut(s) 675, 903
MlyI GAGTC 2 cut(s) 2566, 3952
MmeI TCCRAC 8 cut(s) 464, 775, 1551, 1987, 2206, 2920, 3402, 3711
Mox20I TGGCCA 2 cut(s) 675, 903
Mph1103I ATGCAT 3 cut(s) 418, 3781, 4183
MroI TCCGGA 2 cut(s) 593, 2684
MroNI GCCGGC 2 cut(s) 119, 1048
MroXI GAANNNNTTC 3 cut(s) 693, 3267, 3760
MscI TGGCCA 2 cut(s) 675, 903
MslI CAYNNNNRTG 4 cut(s) 741, 829, 893, 3908
Msp20I TGGCCA 2 cut(s) 675, 903
MspA1I CMGCKG 3 cut(s) 404, 2003, 2649
MspCI CTTAAG 4 cut(s) 254, 326, 2240, 4187
MunI CAATTG 6 cut(s) 468, 1905, 2034, 3072, 3564, 3717
Mva1269I GAATGC 5 cut(s) 11, 875, 1637, 2935, 4181
MvaI CCWGG 9 cut(s) 29, 430, 802, 1815, 2619, 2949, 3432, 4039, 4155
MvnI CGCG 3 cut(s) 1254, 2384, 3084
NaeI GCCGGC 2 cut(s) 121, 1050
NciI CCSGG 3 cut(s) 1030, 3963, 4085
NcoI CCATGG 1 cut(s) 2105
NdeI CATATG 3 cut(s) 418, 1281, 3775
NgoMIV GCCGGC 2 cut(s) 119, 1048
NlaIV GGNNCC 9 cut(s) 369, 427, 799, 1844, 2041, 2446, 2735, 3436, 3682
NmuCI GTSAC 3 cut(s) 1021, 1673, 2806
NruI TCGCGA 1 cut(s) 1254
NsiI ATGCAT 3 cut(s) 418, 3781, 4183
NspI RCATGY 1 cut(s) 2542
NspV TTCGAA 1 cut(s) 1275
OliI CACNNNNGTG 2 cut(s) 741, 893
PaeR7I CTCGAG 2 cut(s) 1555, 2760
PagI TCATGA 2 cut(s) 879, 3558
PaqCI CACCTGC 1 cut(s) 1927
PauI GCGCGC 1 cut(s) 3082
PceI AGGCCT 3 cut(s) 1418, 1547, 2617
PctI GAATGC 5 cut(s) 11, 875, 1637, 2935, 4181
PdiI GCCGGC 2 cut(s) 121, 1050
PdmI GAANNNNTTC 3 cut(s) 693, 3267, 3760
PfeI GAWTC 7 cut(s) 1375, 1521, 1871, 2366, 2819, 3158, 3394
PfoI TCCNGGA 2 cut(s) 1813, 2947
Ple19I CGATCG 1 cut(s) 1635
PleI GAGTC 2 cut(s) 2565, 3952
PpsI GAGTC 2 cut(s) 2565, 3952
Ppu21I YACGTR 3 cut(s) 1896, 2533, 3921
PshBI ATTAAT 1 cut(s) 3639
Psp124BI GAGCTC 1 cut(s) 3405
Psp6I CCWGG 9 cut(s) 27, 428, 800, 1813, 2617, 2947, 3430, 4037, 4153
PspEI GGTNACC 1 cut(s) 3860
PspFI CCCAGC 1 cut(s) 2654
PspGI CCWGG 9 cut(s) 27, 428, 800, 1813, 2617, 2947, 3430, 4037, 4153
PspN4I GGNNCC 9 cut(s) 369, 427, 799, 1844, 2041, 2446, 2735, 3436, 3682
PspPI GGNCC 8 cut(s) 117, 426, 581, 1046, 1147, 1348, 1975, 3212
PspXI VCTCGAGB 1 cut(s) 2760
PstI CTGCAG 2 cut(s) 1176, 3331
PstNI CAGNNNCTG 4 cut(s) 863, 899, 2429, 4008
PsuI RGATCY 3 cut(s) 859, 1456, 3442
PteI GCGCGC 1 cut(s) 3082
PvuI CGATCG 1 cut(s) 1635
PvuII CAGCTG 1 cut(s) 2003
RruI TCGCGA 1 cut(s) 1254
RseI CAYNNNNRTG 4 cut(s) 741, 829, 893, 3908
SacI GAGCTC 1 cut(s) 3405
Sau96I GGNCC 8 cut(s) 117, 426, 581, 1046, 1147, 1348, 1975, 3212
ScaI AGTACT 2 cut(s) 3464, 4196
SchI GAGTC 2 cut(s) 2566, 3952
SduI GDGCHC 9 cut(s) 396, 436, 498, 1708, 2195, 2296, 3128, 3405, 4257
SexAI ACCWGGT 2 cut(s) 800, 3430
SfcI CTRYAG 5 cut(s) 1172, 2997, 3117, 3327, 3795
Sfr274I CTCGAG 2 cut(s) 1555, 2760
SfuI TTCGAA 1 cut(s) 1275
SinI GGWCC 5 cut(s) 426, 581, 1147, 1348, 3212
SlaI CTCGAG 2 cut(s) 1555, 2760
SmiMI CAYNNNNRTG 4 cut(s) 741, 829, 893, 3908
SmlI CTYRAG 8 cut(s) 254, 326, 935, 1555, 2240, 2760, 4119, 4187
SmoI CTYRAG 8 cut(s) 254, 326, 935, 1555, 2240, 2760, 4119, 4187
SnaBI TACGTA 1 cut(s) 1896
SpeI ACTAGT 1 cut(s) 707
SseBI AGGCCT 3 cut(s) 1418, 1547, 2617
SspMI CTAG 7 cut(s) 708, 1053, 2211, 2469, 3060, 3218, 3311
SstI GAGCTC 1 cut(s) 3405
StuI AGGCCT 3 cut(s) 1418, 1547, 2617
StyI CCWWGG 5 cut(s) 787, 1243, 2105, 3438, 3676
TaiI ACGT 7 cut(s) 102, 173, 784, 1898, 2535, 3923, 4142
TatI WGTACW 6 cut(s) 1119, 1486, 3462, 3537, 3888, 4194
TauI GCSGC 3 cut(s) 152, 163, 4045
TfiI GAWTC 7 cut(s) 1375, 1521, 1871, 2366, 2819, 3158, 3394
TseFI GTSAC 3 cut(s) 1021, 1673, 2806
Tsp45I GTSAC 3 cut(s) 1021, 1673, 2806
TspGWI ACGGA 2 cut(s) 1533, 1979
Vha464I CTTAAG 4 cut(s) 254, 326, 2240, 4187
VneI GTGCAC 1 cut(s) 3124
VpaK11BI GGWCC 5 cut(s) 426, 581, 1147, 1348, 3212
VspI ATTAAT 1 cut(s) 3639
XagI CCTNNNNNAGG 1 cut(s) 2240
XapI RAATTY 6 cut(s) 689, 1268, 1851, 3529, 4012, 4149
XceI RCATGY 1 cut(s) 2542
XcmI CCANNNNNNNNNTGG 3 cut(s) 1864, 2112, 3028
XhoI CTCGAG 2 cut(s) 1555, 2760
XmiI GTMKAC 3 cut(s) 571, 850, 2814
XmnI GAANNNNTTC 3 cut(s) 693, 3267, 3760
XspI CTAG 7 cut(s) 708, 1053, 2211, 2469, 3060, 3218, 3311
ZrmI AGTACT 2 cut(s) 3464, 4196
Zsp2I ATGCAT 3 cut(s) 418, 3781, 4183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.