MD04G1187500.v1.1
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
27812168 .. 27813789
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1187500.v1.1.491

Sequence Viewer

Length: 1032 bp
ATGCTTCTCAGCGTGTTGTATGTTCGTGTCTGCACAAATGCTTCTCAGCGTGTTATAATGTTCGTGGTGGTTTTTCAGATCCTTGGACTTGATACATGTGCTGACACGTTGGTTGGAGACGCCATGGGACGAGGCATCTCTGGTGTTCAAAAGAAGAGACTCTCAACAGCCTTGTTCATGGATGAAATAACAAACGGCTTAGACAGTTCCGCTGCATTCCAGATTGTTGCTTGTCTTCAGCATTTGGCGCACATAACAGATGCTACTTTGCTACTTTCTCTTCTTCAGCCAGCGCCGAAGACCTTTGATCTCTTCGATGACCTTATTTTAATGTCAGAAGGGAAGGTTGTTTATCACGGTCCACGTGATCATGTGTTGAAATTTTTCGAGGATTGTGGGTTTAAGTGTCCTGAGAGGAAAGCGGTTGCTGATTGCATTCAAGAGGTAAGTATCTCTAAAAAGGATCAATCACACTATTGGTATCGCACCGAACCTCACAACTATGTACCCGTCAATATGTTTTCAGAAAAATTCAAGGCATCTTCTTTTGGGAGGAAGCTAGAGGAAGATCTGTCACTGCCATACGATAAGACAAAAAACCATGAGAATGCTCTCTCCTTTAGCGAGTATTCTCTTTCGAAACGTGAACTCCTCAGGGCTTGTGCATCAAGAGAACTTCTTTTCATGAAGAGGAATTCTTTTTTCGATATATTCAAAACAATTGAGAGAGACGAGCAAAATTTGTTCAACGTATTTGGTTCAATGTACGCCGGTGTCCTCTTCATGGGCATAAATAACAGCTCAACCGTTTTGCAACACATTGCAACAGAGAGAACTGTTATGTGTCACGAAAAATTTTCCGGGATGTATTTCACTTGCACAGTTGAAGTTCCCTATCTGTTTATCCAGGCAGCCATATTTACGATCATCACGTATTCGATGATTGGATATTATGTATCAAACTATCATACACATAGGGGGGTGAATAGGTTCCAACTTAAAAATCTAATTCAAATTTCATTCTCAATTTAA

Protein Analysis

344

Amino Acids

39.18

Weight (kDa)

7.15

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane_7 PF19055 96 - 145 3.4e-06 ABC-2 type transporter
ABC2_membrane PF01061 237 - 320 7.1e-08 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
AciI CCGC 2 cut(s) 210, 422
AclWI GGATC 2 cut(s) 73, 471
AcsI RAATTY 6 cut(s) 380, 530, 694, 739, 854, 1014
AcuI CTGAAG 2 cut(s) 221, 269
AcvI CACGTG 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 2 cut(s) 507, 767
AfiI CCNNNNNNNGG 1 cut(s) 784
AflIII ACRYGT 2 cut(s) 95, 105
AgsI TTSAA 9 cut(s) 149, 379, 440, 535, 715, 748, 762, 887, 1013
AjnI CCWGG 1 cut(s) 906
AluBI AGCT 2 cut(s) 559, 801
AluI AGCT 2 cut(s) 559, 801
Alw26I GTCTC 3 cut(s) 111, 151, 723
AlwI GGATC 2 cut(s) 73, 471
ApeKI GCWGC 2 cut(s) 212, 911
ApoI RAATTY 6 cut(s) 380, 530, 694, 739, 854, 1014
Asp700I GAANNNNTTC 2 cut(s) 383, 989
AspLEI GCGC 2 cut(s) 250, 295
AspS9I GGNCC 1 cut(s) 359
AsuC2I CCSGG 1 cut(s) 862
AsuHPI GGTGA 1 cut(s) 994
AsuII TTCGAA 1 cut(s) 638
AvaII GGWCC 1 cut(s) 359
AxyI CCTNAGG 1 cut(s) 653
BbrPI CACGTG 1 cut(s) 365
BbsI GAAGAC 2 cut(s) 227, 305
BbvI GCAGC 2 cut(s) 199, 923
BceAI ACGGC 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 908
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 1 cut(s) 862
BcoDI GTCTC 3 cut(s) 111, 151, 723
BfaI CTAG 1 cut(s) 560
BfoI RGCGCY 1 cut(s) 296
BglII AGATCT 1 cut(s) 568
BisI GCNGC 2 cut(s) 213, 912
BlsI GCNGC 2 cut(s) 214, 913
Bme1390I CCNGG 2 cut(s) 862, 908
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 992
BmrFI CCNGG 2 cut(s) 862, 908
BmsI GCATC 4 cut(s) 144, 250, 548, 674
BpiI GAAGAC 2 cut(s) 227, 305
Bpu14I TTCGAA 1 cut(s) 638
BpuMI CCSGG 1 cut(s) 862
BsaAI YACGTR 2 cut(s) 365, 933
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 82, 123
BsaXI ACNNNNNCTCC 2 cut(s) 633, 663
Bsc4I CCNNNNNNNGG 1 cut(s) 784
Bse118I RCCGGY 1 cut(s) 770
Bse21I CCTNAGG 1 cut(s) 653
Bse3DI GCAATG 1 cut(s) 819
BseBI CCWGG 1 cut(s) 908
BseDI CCNNGG 2 cut(s) 82, 123
BseGI GGATG 2 cut(s) 187, 870
BseLI CCNNNNNNNGG 1 cut(s) 784
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 4 cut(s) 22, 59, 402, 667
BseRI GAGGAG 1 cut(s) 641
BseXI GCAGC 2 cut(s) 199, 923
BsgI GTGCAG 1 cut(s) 16
BsiSI CCGG 2 cut(s) 771, 861
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 784
BsmAI GTCTC 3 cut(s) 111, 151, 723
BsmBI CGTCTC 2 cut(s) 111, 723
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 3 cut(s) 215, 435, 613
Bsp119I TTCGAA 1 cut(s) 638
Bsp143I GATC 6 cut(s) 78, 307, 367, 463, 568, 924
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 2 cut(s) 210, 422
BspCNI CTCAG 4 cut(s) 21, 58, 403, 666
BspHI TCATGA 1 cut(s) 684
BspLI GGNNCC 1 cut(s) 992
BspPI GGATC 2 cut(s) 73, 471
BspT104I TTCGAA 1 cut(s) 638
BsrDI GCAATG 1 cut(s) 819
BsrFI RCCGGY 1 cut(s) 770
BssAI RCCGGY 1 cut(s) 770
BssECI CCNNGG 2 cut(s) 82, 123
BssMI GATC 6 cut(s) 78, 307, 367, 463, 568, 924
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 82, 123
Bst2UI CCWGG 1 cut(s) 908
Bst4CI ACNGT 5 cut(s) 206, 359, 808, 838, 883
Bst6I CTCTTC 5 cut(s) 149, 285, 317, 683, 785
BstACI GRCGYC 1 cut(s) 120
BstBAI YACGTR 2 cut(s) 365, 933
BstBI TTCGAA 1 cut(s) 638
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 5 cut(s) 8, 45, 199, 411, 653
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 187, 870
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 2 cut(s) 250, 295
BstKTI GATC 6 cut(s) 81, 310, 370, 466, 571, 927
BstMAI GTCTC 3 cut(s) 111, 151, 723
BstMBI GATC 6 cut(s) 78, 307, 367, 463, 568, 924
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 1 cut(s) 908
BstNSI RCATGY 1 cut(s) 99
BstSCI CCNGG 2 cut(s) 860, 906
BstV1I GCAGC 2 cut(s) 199, 923
BstV2I GAAGAC 2 cut(s) 227, 305
BstX2I RGATCY 2 cut(s) 78, 568
BstYI RGATCY 2 cut(s) 78, 568
Bsu36I CCTNAGG 1 cut(s) 653
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 2 cut(s) 187, 870
BtsI GCAGTG 1 cut(s) 575
BtsIMutI CAGTG 1 cut(s) 575
Cac8I GCNNGC 1 cut(s) 291
CciI TCATGA 1 cut(s) 684
CfoI GCGC 2 cut(s) 250, 295
Cfr10I RCCGGY 1 cut(s) 770
Cfr13I GGNCC 1 cut(s) 359
CseI GACGC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 506, 766
CviAII CATG 7 cut(s) 96, 124, 178, 371, 602, 685, 784
CviJI RGCY 7 cut(s) 170, 198, 289, 559, 659, 801, 914
CviKI_1 RGCY 7 cut(s) 170, 198, 289, 559, 659, 801, 914
CviQI GTAC 2 cut(s) 506, 766
DdeI CTNAG 5 cut(s) 8, 45, 199, 411, 653
DpnI GATC 6 cut(s) 80, 309, 369, 465, 570, 926
DpnII GATC 6 cut(s) 78, 307, 367, 463, 568, 924
Eam1104I CTCTTC 5 cut(s) 149, 285, 317, 683, 785
EarI CTCTTC 5 cut(s) 149, 285, 317, 683, 785
Eco130I CCWWGG 2 cut(s) 82, 123
Eco47I GGWCC 1 cut(s) 359
Eco57I CTGAAG 2 cut(s) 221, 269
Eco72I CACGTG 1 cut(s) 365
Eco81I CCTNAGG 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 906
EcoT14I CCWWGG 2 cut(s) 82, 123
ErhI CCWWGG 2 cut(s) 82, 123
Esp3I CGTCTC 2 cut(s) 111, 723
FaeI CATG 7 cut(s) 99, 127, 181, 374, 605, 688, 787
FaqI GGGAC 1 cut(s) 141
FatI CATG 7 cut(s) 95, 123, 177, 370, 601, 684, 783
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 2 cut(s) 213, 912
FokI GGATG 2 cut(s) 194, 877
Fsp4HI GCNGC 2 cut(s) 213, 912
FspBI CTAG 1 cut(s) 560
GlaI GCGC 2 cut(s) 249, 294
GluI GCNGC 2 cut(s) 213, 912
HaeII RGCGCY 1 cut(s) 296
HapII CCGG 2 cut(s) 771, 861
HgaI GACGC 1 cut(s) 128
HhaI GCGC 2 cut(s) 250, 295
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 7 cut(s) 99, 127, 181, 374, 605, 688, 787
Hin6I GCGC 2 cut(s) 248, 293
HinP1I GCGC 2 cut(s) 248, 293
HinfI GANTC 1 cut(s) 159
HpaII CCGG 2 cut(s) 771, 861
HphI GGTGA 1 cut(s) 994
Hpy166II GTNNAC 2 cut(s) 362, 647
Hpy188I TCNGA 3 cut(s) 78, 337, 526
Hpy188III TCNNGA 6 cut(s) 220, 410, 440, 669, 685, 848
Hpy8I GTNNAC 2 cut(s) 362, 647
HpyAV CCTTC 2 cut(s) 332, 337
HpyCH4III ACNGT 5 cut(s) 206, 359, 808, 838, 883
HpyCH4IV ACGT 5 cut(s) 107, 364, 643, 750, 932
HpyCH4V TGCA 7 cut(s) 33, 215, 435, 665, 814, 824, 879
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 5 cut(s) 8, 45, 199, 411, 653
HpySE526I ACGT 5 cut(s) 107, 364, 643, 750, 932
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 7 cut(s) 99, 127, 181, 374, 605, 688, 787
HspAI GCGC 2 cut(s) 248, 293
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 6 cut(s) 78, 307, 367, 463, 568, 924
LpnPI CCDG 9 cut(s) 126, 233, 303, 423, 640, 784, 874, 893, 920
Lsp1109I GCAGC 2 cut(s) 199, 923
LweI GCATC 4 cut(s) 144, 250, 548, 674
MaeI CTAG 1 cut(s) 560
MaeII ACGT 5 cut(s) 107, 364, 643, 750, 932
MaeIII GTNAC 2 cut(s) 573, 845
MalI GATC 6 cut(s) 80, 309, 369, 465, 570, 926
MboI GATC 6 cut(s) 78, 307, 367, 463, 568, 924
MfeI CAATTG 1 cut(s) 720
MflI RGATCY 2 cut(s) 78, 568
MluCI AATT 9 cut(s) 380, 530, 694, 720, 739, 854, 1008, 1014, 1026
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 2 cut(s) 94, 1018
MroXI GAANNNNTTC 2 cut(s) 383, 989
MseI TTAA 4 cut(s) 329, 402, 999, 1030
MslI CAYNNNNRTG 2 cut(s) 501, 606
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 2 cut(s) 771, 861
MspR9I CCNGG 2 cut(s) 862, 908
MunI CAATTG 1 cut(s) 720
Mva1269I GAATGC 3 cut(s) 215, 435, 613
MvaI CCWGG 1 cut(s) 908
MwoI GCNNNNNNNGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 862
NcoI CCATGG 1 cut(s) 123
NdeII GATC 6 cut(s) 78, 307, 367, 463, 568, 924
NlaIII CATG 7 cut(s) 99, 127, 181, 374, 605, 688, 787
NlaIV GGNNCC 1 cut(s) 992
NmuCI GTSAC 2 cut(s) 573, 845
NspI RCATGY 1 cut(s) 99
NspV TTCGAA 1 cut(s) 638
PagI TCATGA 1 cut(s) 684
PciI ACATGT 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 929
PctI GAATGC 3 cut(s) 215, 435, 613
PdmI GAANNNNTTC 2 cut(s) 383, 989
PfoI TCCNGGA 1 cut(s) 860
PkrI GCNGC 2 cut(s) 214, 913
PleI GAGTC 1 cut(s) 153
PmaCI CACGTG 1 cut(s) 365
PmlI CACGTG 1 cut(s) 365
PpsI GAGTC 1 cut(s) 153
Ppu21I YACGTR 2 cut(s) 365, 933
PscI ACATGT 1 cut(s) 95
PsiI TTATAA 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 906
PspCI CACGTG 1 cut(s) 365
PspGI CCWGG 1 cut(s) 906
PspN4I GGNNCC 1 cut(s) 992
PspPI GGNCC 1 cut(s) 359
PsuI RGATCY 2 cut(s) 78, 568
RsaI GTAC 2 cut(s) 507, 767
RsaNI GTAC 2 cut(s) 506, 766
RseI CAYNNNNRTG 2 cut(s) 501, 606
SaqAI TTAA 4 cut(s) 329, 402, 999, 1030
SatI GCNGC 2 cut(s) 213, 912
Sau3AI GATC 6 cut(s) 78, 307, 367, 463, 568, 924
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 2 cut(s) 862, 908
SfaNI GCATC 4 cut(s) 144, 250, 548, 674
SfuI TTCGAA 1 cut(s) 638
SgrAI CRCCGGYG 1 cut(s) 770
SinI GGWCC 1 cut(s) 359
SmiMI CAYNNNNRTG 2 cut(s) 501, 606
Sse9I AATT 9 cut(s) 380, 530, 694, 720, 739, 854, 1008, 1014, 1026
SsiI CCGC 2 cut(s) 210, 422
SspMI CTAG 1 cut(s) 560
StyD4I CCNGG 2 cut(s) 860, 906
StyI CCWWGG 2 cut(s) 82, 123
TaaI ACNGT 5 cut(s) 206, 359, 808, 838, 883
TaiI ACGT 5 cut(s) 110, 367, 646, 753, 935
TaqI TCGA 5 cut(s) 315, 387, 638, 705, 938
TasI AATT 9 cut(s) 380, 530, 694, 720, 739, 854, 1008, 1014, 1026
Tru1I TTAA 4 cut(s) 329, 402, 999, 1030
Tru9I TTAA 4 cut(s) 329, 402, 999, 1030
TscAI CASTG 1 cut(s) 582
TseFI GTSAC 2 cut(s) 573, 845
TseI GCWGC 2 cut(s) 212, 911
Tsp45I GTSAC 2 cut(s) 573, 845
TspDTI ATGAA 6 cut(s) 166, 198, 673, 701, 772, 1008
TspRI CASTG 1 cut(s) 582
VpaK11BI GGWCC 1 cut(s) 359
XapI RAATTY 6 cut(s) 380, 530, 694, 739, 854, 1014
XceI RCATGY 1 cut(s) 99
XmnI GAANNNNTTC 2 cut(s) 383, 989
XspI CTAG 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.