Rmu_co8358859.1_g000001

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8358859.1
Physical Location & Seq
Reverse (-)
1 .. 957
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8358859.1_g000001.1.cds

Sequence Viewer

Length: 649 bp
ctgatcaatcttttgggagctacctatgctgctgttcttttcctcggagctagcaatgcctctgccgtgcaatctgtagtggcagttgagcgaacagttttctaccgtgaaagagctgcaggaatgtactcagagttgccttatgcttttgctcaggtggctattgagactatttacgttgcaatccaaacctttgtgtattcctgtcttctgtattctatgatcgggtacaactggaaggtggagaaatttttgtacttctactacttcattttcatgtgctttacctacttctcaatgtacgggatgatggtggttgccctaactcctggccatcaaattgctgcaattgtcatgtctttcttcatgagcttctggaacttgttctctggtttcctcatccctagaccgcttatccccatctggtggaggtggtattactggggttctccagttgcttggaccatctatggcatcttcggatctcaagtcggtgacttgaagaaggagatcgacttgcctaccggaggaaaacaagcagtgaatgttttcctcaaggagtatttgggttatgactatgacttcctcattcctgtagtggttgctcatgttggttgggtcctcctcttcttctttgtctttgcctacg

Protein Analysis

216

Amino Acids

24.94

Weight (kDa)

6.91

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 426
AciI CCGC 1 cut(s) 410
AclWI GGATC 1 cut(s) 490
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 1 cut(s) 248
AfaI GTAC 4 cut(s) 128, 230, 257, 302
AfiI CCNNNNNNNGG 2 cut(s) 426, 527
AgsI TTSAA 1 cut(s) 502
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 4 cut(s) 20, 50, 116, 372
AluI AGCT 4 cut(s) 20, 50, 116, 372
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 490
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 3 cut(s) 29, 116, 344
ApoI RAATTY 1 cut(s) 248
Asp700I GAANNNNTTC 2 cut(s) 383, 548
AspS9I GGNCC 2 cut(s) 462, 619
AsuHPI GGTGA 1 cut(s) 506
AsuNHI GCTAGC 1 cut(s) 50
AvaII GGWCC 2 cut(s) 462, 619
BalI TGGCCA 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 3 cut(s) 16, 103, 331
BccI CCATC 4 cut(s) 304, 342, 428, 473
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 330
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 2 cut(s) 51, 405
BfmI CTRYAG 3 cut(s) 75, 117, 594
BisI GCNGC 3 cut(s) 30, 117, 345
BlsI GCNGC 3 cut(s) 31, 118, 346
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 2 cut(s) 462, 619
BmgT120I GGNCC 2 cut(s) 462, 619
BmiI GGNNCC 1 cut(s) 620
BmrFI CCNGG 1 cut(s) 330
BmrI ACTGGG 1 cut(s) 451
BmsI GCATC 1 cut(s) 483
BmtI GCTAGC 1 cut(s) 54
BmuI ACTGGG 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 435
Bpu10I CCTNAGC 1 cut(s) 153
BpuEI CTTGAG 2 cut(s) 471, 539
BsaJI CCNNGG 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 524
Bsc4I CCNNNNNNNGG 2 cut(s) 426, 527
Bse1I ACTGG 3 cut(s) 239, 446, 452
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 2 cut(s) 312, 399
BseLI CCNNNNNNNGG 2 cut(s) 426, 527
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 144, 167
BseNI ACTGG 3 cut(s) 239, 446, 452
BseRI GAGGAG 1 cut(s) 614
BseXI GCAGC 3 cut(s) 16, 103, 331
BshFI GGCC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 525
BslI CCNNNNNNNGG 2 cut(s) 426, 527
BsmAI GTCTC 1 cut(s) 161
BsnI GGCC 1 cut(s) 333
Bsp143I GATC 4 cut(s) 3, 222, 482, 510
BspACI CCGC 1 cut(s) 410
BspANI GGCC 1 cut(s) 333
BspCNI CTCAG 2 cut(s) 143, 166
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 620
BspMAI CTGCAG 1 cut(s) 121
BspOI GCTAGC 1 cut(s) 54
BspPI GGATC 1 cut(s) 490
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 3 cut(s) 239, 446, 452
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 4 cut(s) 3, 222, 482, 510
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 97, 107
Bst6I CTCTTC 1 cut(s) 632
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 130, 153
BstENI CCTNNNNNAGG 1 cut(s) 525
BstF5I GGATG 2 cut(s) 312, 399
BstKTI GATC 4 cut(s) 6, 225, 485, 513
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 4 cut(s) 3, 222, 482, 510
BstMWI GCNNNNNNNGC 3 cut(s) 26, 56, 158
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 328
BstSFI CTRYAG 3 cut(s) 75, 117, 594
BstV1I GCAGC 3 cut(s) 16, 103, 331
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 482
BstXI CCANNNNNNTGG 1 cut(s) 459
BstYI RGATCY 1 cut(s) 482
BsuRI GGCC 1 cut(s) 333
BtsCI GGATG 2 cut(s) 312, 399
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 1 cut(s) 546
Cac8I GCNNGC 1 cut(s) 52
CciI TCATGA 1 cut(s) 366
Cfr13I GGNCC 2 cut(s) 462, 619
Csp6I GTAC 4 cut(s) 127, 229, 256, 301
CviAII CATG 4 cut(s) 277, 355, 367, 608
CviJI RGCY 6 cut(s) 20, 50, 116, 161, 333, 372
CviKI_1 RGCY 6 cut(s) 20, 50, 116, 161, 333, 372
CviQI GTAC 4 cut(s) 127, 229, 256, 301
DdeI CTNAG 2 cut(s) 130, 153
DpnI GATC 4 cut(s) 5, 224, 484, 512
DpnII GATC 4 cut(s) 3, 222, 482, 510
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 632
EarI CTCTTC 1 cut(s) 632
Eco47I GGWCC 2 cut(s) 462, 619
EcoNI CCTNNNNNAGG 1 cut(s) 525
EcoO109I RGGNCCY 1 cut(s) 619
EcoRII CCWGG 1 cut(s) 328
FaeI CATG 4 cut(s) 280, 358, 370, 611
FatI CATG 4 cut(s) 276, 354, 366, 607
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 30, 117, 345
FokI GGATG 2 cut(s) 319, 386
Fsp4HI GCNGC 3 cut(s) 30, 117, 345
FspBI CTAG 2 cut(s) 51, 405
GluI GCNGC 3 cut(s) 30, 117, 345
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 1 cut(s) 333
HapII CCGG 1 cut(s) 525
Hin1II CATG 4 cut(s) 280, 358, 370, 611
HpaII CCGG 1 cut(s) 525
HphI GGTGA 1 cut(s) 506
Hpy188I TCNGA 3 cut(s) 47, 133, 482
Hpy188III TCNNGA 2 cut(s) 367, 376
HpyAV CCTTC 2 cut(s) 232, 499
HpyCH4III ACNGT 2 cut(s) 97, 107
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 4 cut(s) 70, 119, 182, 347
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 56, 158
HpyF3I CTNAG 2 cut(s) 130, 153
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 4 cut(s) 280, 358, 370, 611
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 222, 482, 510
LmnI GCTCC 2 cut(s) 17, 47
Lsp1109I GCAGC 3 cut(s) 16, 103, 331
LweI GCATC 1 cut(s) 483
MaeI CTAG 2 cut(s) 51, 405
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 494
MalI GATC 4 cut(s) 5, 224, 484, 512
MboI GATC 4 cut(s) 3, 222, 482, 510
MboII GAAGA 6 cut(s) 200, 355, 469, 514, 619, 622
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 482
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 3 cut(s) 248, 339, 348
MluNI TGGCCA 1 cut(s) 333
MnlI CCTC 9 cut(s) 53, 70, 407, 423, 521, 563, 596, 632, 635
Mox20I TGGCCA 1 cut(s) 333
MroXI GAANNNNTTC 2 cut(s) 383, 548
MscI TGGCCA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 333
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 1 cut(s) 330
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 3 cut(s) 26, 56, 158
NdeII GATC 4 cut(s) 3, 222, 482, 510
NheI GCTAGC 1 cut(s) 50
NlaIII CATG 4 cut(s) 280, 358, 370, 611
NlaIV GGNNCC 1 cut(s) 620
NmuCI GTSAC 1 cut(s) 494
PagI TCATGA 1 cut(s) 366
PdmI GAANNNNTTC 2 cut(s) 383, 548
PflMI CCANNNNNTGG 1 cut(s) 426
PkrI GCNGC 3 cut(s) 31, 118, 346
PpuMI RGGWCCY 1 cut(s) 619
Psp5II RGGWCCY 1 cut(s) 619
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 620
PspPI GGNCC 2 cut(s) 462, 619
PspPPI RGGWCCY 1 cut(s) 619
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 482
RsaI GTAC 4 cut(s) 128, 230, 257, 302
RsaNI GTAC 4 cut(s) 127, 229, 256, 301
RseI CAYNNNNRTG 1 cut(s) 275
SatI GCNGC 3 cut(s) 30, 117, 345
Sau3AI GATC 4 cut(s) 3, 222, 482, 510
Sau96I GGNCC 2 cut(s) 462, 619
ScrFI CCNGG 1 cut(s) 330
SfaNI GCATC 1 cut(s) 483
SfcI CTRYAG 3 cut(s) 75, 117, 594
SinI GGWCC 2 cut(s) 462, 619
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 486, 554
SmoI CTYRAG 2 cut(s) 486, 554
Sse9I AATT 3 cut(s) 248, 339, 348
SsiI CCGC 1 cut(s) 410
SspMI CTAG 2 cut(s) 51, 405
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 2 cut(s) 97, 107
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 513
TasI AATT 3 cut(s) 248, 339, 348
TatI WGTACW 2 cut(s) 126, 255
TscAI CASTG 1 cut(s) 546
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 3 cut(s) 29, 116, 344
Tsp45I GTSAC 1 cut(s) 494
TspDTI ATGAA 3 cut(s) 259, 265, 355
TspRI CASTG 1 cut(s) 546
Van91I CCANNNNNTGG 1 cut(s) 426
VpaK11BI GGWCC 2 cut(s) 462, 619
XagI CCTNNNNNAGG 1 cut(s) 525
XapI RAATTY 1 cut(s) 248
XmnI GAANNNNTTC 2 cut(s) 383, 548
XspI CTAG 2 cut(s) 51, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.