Rmu_co8422375.1_g000001
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8422375.1
OG0000245
Physical Location & Seq
Forward (+)
82 .. 964
883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8422375.1_g000001.1.cds

Sequence Viewer

Length: 660 bp
atgtatgctgctgtgcttttccttggagctacaaatgcttctgcggtgcaagcagttgttgccattgaaagaacagttttctatcgtgaaagagcggctgggatgtattctgaactgccttatgcatttgctcaggtggccatagagacaatctatgttgcaattcaaacttttatctacactcttatcctctactctatgattggatttgagtggaagatagtcaaattcctctggttctactactacatactgatgtgcttcatctacttcacaatgtatgggatgatggttgttgcactcactccaggccaccagattgctgcaattgttatgtcctttttcctcagtttctggaatttgttttccgggtttctcattccaagaccgcaaatcccaatatggtggaggtggtactactgggcttcacctgtggcttggacgctatatggccttgtgacctctcaagtgggtgacaaggatgctgatcttgtgctacctggatatggcactatgaaattgaagacgttccttaaggatcagctggcttttgattatgatttccttccggctgtcgcagctgcccatgttggctgggtcctcctgttcttctttgtgtttgcatatggaatcaagttcctcaactttcagaggagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

219

Amino Acids

25.5

Weight (kDa)

8.84

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 95
AciI CCGC 3 cut(s) 44, 95, 389
AclWI GGATC 1 cut(s) 546
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 2 cut(s) 227, 358
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 1 cut(s) 506
AflII CTTAAG 1 cut(s) 533
AgsI TTSAA 3 cut(s) 68, 167, 523
AjnI CCWGG 2 cut(s) 307, 499
AluBI AGCT 3 cut(s) 29, 544, 581
AluI AGCT 3 cut(s) 29, 544, 581
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 546
AlwNI CAGNNNCTG 1 cut(s) 354
AoxI GGCC 3 cut(s) 138, 310, 451
ApeKI GCWGC 4 cut(s) 8, 323, 578, 581
ApoI RAATTY 2 cut(s) 227, 358
Asp700I GAANNNNTTC 1 cut(s) 527
AspS9I GGNCC 1 cut(s) 598
AsuC2I CCSGG 1 cut(s) 370
AsuHPI GGTGA 2 cut(s) 420, 485
AvaII GGWCC 1 cut(s) 598
BalI TGGCCA 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 530
BbvI GCAGC 3 cut(s) 310, 568, 590
BccI CCATC 1 cut(s) 283
BciT130I CCWGG 2 cut(s) 309, 501
BcnI CCSGG 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 140
BfrI CTTAAG 1 cut(s) 533
BisI GCNGC 5 cut(s) 9, 96, 324, 579, 582
BlsI GCNGC 5 cut(s) 10, 97, 325, 580, 583
Bme1390I CCNGG 3 cut(s) 309, 370, 501
Bme18I GGWCC 1 cut(s) 598
BmgT120I GGNCC 1 cut(s) 598
BmiI GGNNCC 1 cut(s) 599
BmrFI CCNGG 3 cut(s) 309, 370, 501
BmrI ACTGGG 1 cut(s) 430
BmsI GCATC 1 cut(s) 472
BmuI ACTGGG 1 cut(s) 430
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 1 cut(s) 291
Bpu10I CCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 450
BpuMI CCSGG 1 cut(s) 370
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse1I ACTGG 1 cut(s) 425
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 2 cut(s) 309, 501
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 3 cut(s) 108, 291, 487
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMII CTCAG 2 cut(s) 146, 361
BseNI ACTGG 1 cut(s) 425
BseXI GCAGC 3 cut(s) 310, 568, 590
BseYI CCCAGC 2 cut(s) 98, 594
BshFI GGCC 3 cut(s) 140, 312, 453
BsiSI CCGG 2 cut(s) 369, 569
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 3 cut(s) 140, 312, 453
Bsp143I GATC 2 cut(s) 487, 538
BspACI CCGC 3 cut(s) 44, 95, 389
BspANI GGCC 3 cut(s) 140, 312, 453
BspCNI CTCAG 2 cut(s) 145, 360
BspLI GGNNCC 1 cut(s) 599
BspPI GGATC 1 cut(s) 546
BspTI CTTAAG 1 cut(s) 533
BsrBI CCGCTC 1 cut(s) 95
BsrI ACTGG 1 cut(s) 425
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 2 cut(s) 487, 538
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 2 cut(s) 309, 501
Bst4CI ACNGT 1 cut(s) 76
BstAFI CTTAAG 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 51, 546
BstDEI CTNAG 2 cut(s) 132, 347
BstF5I GGATG 3 cut(s) 108, 291, 487
BstKTI GATC 2 cut(s) 490, 541
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 487, 538
BstMWI GCNNNNNNNGC 5 cut(s) 35, 50, 59, 137, 578
BstNI CCWGG 2 cut(s) 309, 501
BstSCI CCNGG 3 cut(s) 307, 368, 499
BstV1I GCAGC 3 cut(s) 310, 568, 590
BstV2I GAAGAC 1 cut(s) 530
BstXI CCANNNNNNTGG 1 cut(s) 405
BsuRI GGCC 3 cut(s) 140, 312, 453
BtsCI GGATG 3 cut(s) 108, 291, 487
Cac8I GCNNGC 2 cut(s) 51, 546
CaiI CAGNNNCTG 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 598
CseI GACGC 1 cut(s) 451
Csp6I GTAC 1 cut(s) 415
CviAII CATG 1 cut(s) 587
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 2 cut(s) 132, 347
DpnI GATC 2 cut(s) 489, 540
DpnII GATC 2 cut(s) 487, 538
EaeI YGGCCR 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 598
EcoO109I RGGNCCY 1 cut(s) 598
EcoRII CCWGG 2 cut(s) 307, 499
EcoT14I CCWWGG 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 1 cut(s) 590
FatI CATG 1 cut(s) 586
FauNDI CATATG 1 cut(s) 625
Fnu4HI GCNGC 5 cut(s) 9, 96, 324, 579, 582
FokI GGATG 3 cut(s) 115, 298, 494
Fsp4HI GCNGC 5 cut(s) 9, 96, 324, 579, 582
GluI GCNGC 5 cut(s) 9, 96, 324, 579, 582
GsaI CCCAGC 2 cut(s) 102, 598
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 3 cut(s) 140, 312, 453
HapII CCGG 2 cut(s) 369, 569
HgaI GACGC 1 cut(s) 451
Hin1II CATG 1 cut(s) 590
HinfI GANTC 1 cut(s) 630
HpaII CCGG 2 cut(s) 369, 569
HphI GGTGA 2 cut(s) 420, 485
Hpy188I TCNGA 2 cut(s) 112, 651
Hpy188III TCNNGA 2 cut(s) 86, 355
HpyAV CCTTC 1 cut(s) 575
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 527
HpyCH4V TGCA 6 cut(s) 49, 125, 161, 299, 326, 623
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 50, 59, 137, 578
HpyF3I CTNAG 2 cut(s) 132, 347
HpySE526I ACGT 1 cut(s) 527
Hsp92II CATG 1 cut(s) 590
Kzo9I GATC 2 cut(s) 487, 538
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 3 cut(s) 310, 568, 590
LweI GCATC 1 cut(s) 472
MaeII ACGT 1 cut(s) 527
MaeIII GTNAC 2 cut(s) 457, 473
MalI GATC 2 cut(s) 489, 540
MbiI CCGCTC 1 cut(s) 95
MboI GATC 2 cut(s) 487, 538
MboII GAAGA 3 cut(s) 229, 535, 601
MfeI CAATTG 1 cut(s) 327
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 5 cut(s) 162, 227, 327, 358, 518
MluNI TGGCCA 1 cut(s) 140
MnlI CCTC 8 cut(s) 200, 242, 356, 402, 472, 611, 645, 650
Mox20I TGGCCA 1 cut(s) 140
Mph1103I ATGCAT 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 527
MscI TGGCCA 1 cut(s) 140
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 254
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 2 cut(s) 544, 581
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 2 cut(s) 369, 569
MspR9I CCNGG 3 cut(s) 309, 370, 501
MunI CAATTG 1 cut(s) 327
MvaI CCWGG 2 cut(s) 309, 501
MwoI GCNNNNNNNGC 5 cut(s) 35, 50, 59, 137, 578
NciI CCSGG 1 cut(s) 370
NdeI CATATG 1 cut(s) 625
NdeII GATC 2 cut(s) 487, 538
NlaIII CATG 1 cut(s) 590
NlaIV GGNNCC 1 cut(s) 599
NmuCI GTSAC 2 cut(s) 457, 473
NsiI ATGCAT 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 1 cut(s) 630
PkrI GCNGC 5 cut(s) 10, 97, 325, 580, 583
PpuMI RGGWCCY 1 cut(s) 598
Psp5II RGGWCCY 1 cut(s) 598
Psp6I CCWGG 2 cut(s) 307, 499
PspFI CCCAGC 2 cut(s) 98, 594
PspGI CCWGG 2 cut(s) 307, 499
PspN4I GGNNCC 1 cut(s) 599
PspPI GGNCC 1 cut(s) 598
PspPPI RGGWCCY 1 cut(s) 598
PstNI CAGNNNCTG 1 cut(s) 354
PvuII CAGCTG 2 cut(s) 544, 581
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 5 cut(s) 9, 96, 324, 579, 582
Sau3AI GATC 2 cut(s) 487, 538
Sau96I GGNCC 1 cut(s) 598
ScrFI CCNGG 3 cut(s) 309, 370, 501
SetI ASST 9 cut(s) 31, 138, 413, 433, 464, 502, 530, 546, 583
SfaNI GCATC 1 cut(s) 472
SinI GGWCC 1 cut(s) 598
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 2 cut(s) 465, 533
SmoI CTYRAG 2 cut(s) 465, 533
Sse9I AATT 5 cut(s) 162, 227, 327, 358, 518
SsiI CCGC 3 cut(s) 44, 95, 389
StyD4I CCNGG 3 cut(s) 307, 368, 499
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 530
TasI AATT 5 cut(s) 162, 227, 327, 358, 518
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 630
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 2 cut(s) 457, 473
TseI GCWGC 4 cut(s) 8, 323, 578, 581
Tsp45I GTSAC 2 cut(s) 457, 473
TspDTI ATGAA 2 cut(s) 253, 530
Vha464I CTTAAG 1 cut(s) 533
VpaK11BI GGWCC 1 cut(s) 598
XapI RAATTY 2 cut(s) 227, 358
XmnI GAANNNNTTC 1 cut(s) 527
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.