MD12G1021000.v1.1
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
2107259 .. 2111981
4723 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1021000.v1.1.491

Sequence Viewer

Length: 2793 bp
ATGGCGGCGCCTTTGGCGAGCGACGATCTGGCCCAGTCGACCAGCAGCCGGAGAAGCTGGGGGTTGGGAAGCAAGAGGAGCTGGGCGTCCACAAGTTTCGGGGAAGTGTGGCAGGCGCCGCCGGATGTGTTCAACAGGAGCGGGCGGCAGGATGAGGAGGATGAGCTGCGGTGGGCGGCGATCCAGCGGCTGCCAACGTATGACAGGTTGAAAAGAGGGATGCTGACGCAGGTGCTGGACAATGGGAGGGTGGTGACTGATGAGGTGGACGTGACGAAGCTGGGAATGCAGGACAGGAAGCAGTTGATGGAGAGTATATTGAAGGTTGTGGAAGATGATAACGAAAGTTTCTTGAGAAGACTTAGGGACAGAACTGATAGTGTGGGGATCGAAATTCCGAAGATTGAAGTTCGATATGAGAACTTGTCTATGGATGGGGATGTGTATGTTGGGAGCAGAGCACTGCCTACTCTACTTAATGCTACCTTGAACACCATTGAGAGTGTTCTGGGATTAATTAAGCTTGCTCCATCAAAAAAGAGAAAGATCCAGATACTTAAAGATGTCAGTGGAATAGTCAGACCTTCCAGGATGACCCTACTTTTGGGTCCTCCAGGTGCAGGCAAAACAACCTTGTTACTAGCACTTGCAGGAAAGCTTGGCGATGATCTAAGAGTTTCTGGGAAAGTCACATATTGTGGCCATGAGCTGCATGAGTTTGTTCCTAGAAGAACATGTGCTTACATTAGTCAGCATGATCTACACTATGGAGAAATGACAGTGAGAGAGACGTTGGATTTCTCGGGACGTTGTTTGGGCGTCGGAACTCGATACCAAATGCTGGCTGAACTCTCAAGAAGAGAGAAAGAAGCCGGAATCAAGCCGGACCCCGAGATTGATGCATTCATGAAAGCCACCTCAGTCTCAGGCCAGAAGACTAGTTTGGTCACAGATTATGTTCTCAAGATACTTGGTTTGGATACCTGTGCTGATATCTTGGTTGGTGATGATATGAGGAGGGGTATTTCCGGTGGCCAGAAAAAGCGCGTGACCACCGGGGAGATGTTGGTAGGACCAGCAAAGGTTCTTCTGATGGATGAAATATCAACAGGGTTAGACAGTTCCACAACTTTTCAGATATGCAGATGCATGAGGCAATTGGTTCACATAATGGATGTTACCATGGTCATCTCTCTTCTGCAGCCTGCGCCGGAGACGTTTGAGCTCTTTGATGACCTAATCCTGCTTTCGGAAGGGCAGATCGTGTACCAAGGTCCGCGCGAGAGTGTCCTCGAGTTCTTCGAACGCATGGGATTCAAGTGCCCAGAGAGGAAAGGAGTTGTTGATTTTTTGCAAGAAGTGACATCCAAGAAGGATCAAGAGCAGTATTGGTTAAAAAATAACCAACCTTACAGATATATTTCGGTTCCTGAGTTCGTGGAGGCCTTCAGCTCTTTTCGGAGTGGCCAACAGCTTGCAGCTGATCTTGGGGTTCCTTATGACAAGTCCAGAGCTCATCGGGCTGCATTAGTCACAGCGAAGTATGGCATTTCAAAATGGGAATTGTTCAAGGCATGTTTTGCGAGGGAGTGGCTGCTAATGAAGCGCAATTCGTTTGTGTACATATTTAAGACCACGCAGATAACGAGCATGTCATTGATTGCCTTGACTGTGTTCCTTAGAACAGAAATGTCTGTGGGGACAGTTCAAGATGGAGGAAAATTTTTTGGAGCACTGTTCTTCAGTCTGATCAATGTGATGTTTAATGGTATGGCAGAACTGGCAATGACTGTTTTCAGACTTCCTGTTTTCTATAAGCAGAGGGATTTGTTGTTTTATCCTGCGTGGGCTTTTGGATTACCAATTTGGGTCCTCAGGATCCCACTTTCGTTCATTGAATCTGGGATTTGGATCATTCTTACCTATTACACCATTGGATTTGCTCCAGCTGCTAGTAGATTTTTCAAACAGTTCTTGGCATTCTTTGGCATACATCAGATGGCTCTGTCCCTCTTTCGGTTCATTGCTGCAATTGGGAGAACACAAGTTCTTGCTAGCACGCTCGGTACCTTTACCTTGCTAATGGTATTTGTCCTGGGAGGATTTATCGTTTCCAAAAACGACCTTGAGCCTTGGATGCTATGGGGCTACTACATTTCCCCTATGATGTACGGACAAAATGCGATCGTCATGAATGAATTCCTAGACAAAAGATGGAGCGCACCAAATACAGATCCAAGAATTAAAGCAACAACAGTCGGGAAAGTCCTCCTCATGTCTAGAGGATTCTTCACAGATGAACACTGGTTTTGGATATGTATTGGAGCACTATTTGGTTTCTCTCTTCTCTACAACATCTTGTTCATTGCAGCATTGACTTATTTGAACCCTCTCGGGGATGCAAAAGCTGTCGTATCTGATGAAGAAAGTGAAGGAAAGAGAAAGAAGTCGTTATGTGAAGAAATGACAGTGAAAAGTTCTTCAGAAATTGTTGGTGATTCGGATCATGCACCAAAGAAAGGAATGGCTTTGCCCTTCCAACCCCTTTCACTTGTGTTTAACCATGTGAACTACTTCGTGGATATGCCCTCTGAAATGAAGACTCATGGAGTTGAAGAAGATCGCCTTCAACTGCTACGAGATGTCTGTGGTGCTTTTAGACCCGGAATATTGACAGCCCTTGTAGGTGTTAGTGGTGCTGGAAAGACAACTCTTATGGACGTCTTGGCAGGTAGAAAGACTGGTGGATATATCAAAGGGACCATTAACATTAAAGGGACACCTCACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

931

Amino Acids

104.3

Weight (kDa)

8.67

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 112 - 161 3.1e-08 ABC-transporter N-terminal
ABC_tran PF00005 186 - 368 3.1e-17 ABC transporter
ABC2_membrane_7 PF19055 401 - 451 1.7e-06 ABC-2 type transporter
ABC2_membrane PF01061 522 - 734 8.9e-46 ABC-2 type transporter
PDR_assoc PF08370 739 - 805 3.7e-26 Plant PDR ABC transporter associated
ABC_tran PF00005 880 - 928 5.8e-06 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 220
AatII GACGTC 1 cut(s) 2724
Acc36I ACCTGC 2 cut(s) 220, 2720
Acc65I GGTACC 1 cut(s) 2066
AccB1I GGYRCC 3 cut(s) 7, 115, 2066
AccB7I CCANNNNNTGG 1 cut(s) 841
AccBSI CCGCTC 1 cut(s) 141
AccI GTMKAC 1 cut(s) 38
AccII CGCG 3 cut(s) 1047, 1279, 1281
AciI CCGC 8 cut(s) 5, 119, 141, 145, 169, 176, 187, 1277
AclWI GGATC 9 cut(s) 175, 395, 541, 1383, 1873, 1886, 1919, 2228, 2511
AcoI YGGCCR 3 cut(s) 700, 1033, 1465
AcsI RAATTY 3 cut(s) 393, 1721, 2198
AcuI CTGAAG 3 cut(s) 1432, 1726, 2466
AcyI GRCGYC 5 cut(s) 8, 86, 116, 819, 2721
AfaI GTAC 4 cut(s) 1268, 1622, 2068, 2171
AfiI CCNNNNNNNGG 8 cut(s) 48, 604, 620, 841, 1249, 2016, 2395, 2519
AflIII ACRYGT 1 cut(s) 734
AhlI ACTAGT 1 cut(s) 938
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 3 cut(s) 587, 613, 2094
AjuI GAANNNNNNNTTGG 2 cut(s) 926, 958
Alw21I GWGCWC 5 cut(s) 463, 1227, 1516, 1735, 2329
Alw26I GTCTC 3 cut(s) 782, 928, 1208
AlwI GGATC 9 cut(s) 175, 395, 541, 1383, 1873, 1886, 1919, 2228, 2511
AlwNI CAGNNNCTG 2 cut(s) 190, 235
Ama87I CYCGRG 4 cut(s) 802, 890, 1292, 2393
AoxI GGCC 6 cut(s) 30, 700, 928, 1033, 1443, 1465
ApoI RAATTY 3 cut(s) 393, 1721, 2198
ArsI GACNNNNNNTTYG 2 cut(s) 586, 618
AseI ATTAAT 1 cut(s) 515
Asp700I GAANNNNTTC 2 cut(s) 2198, 2573
Asp718I GGTACC 1 cut(s) 2066
AspLEI GCGC 7 cut(s) 10, 118, 1047, 1210, 1281, 1608, 2222
AspS9I GGNCC 7 cut(s) 31, 608, 886, 1073, 1274, 1870, 2760
AsuC2I CCSGG 2 cut(s) 1057, 2664
AsuHPI GGTGA 3 cut(s) 265, 1016, 2507
AsuII TTCGAA 1 cut(s) 1302
AsuNHI GCTAGC 1 cut(s) 2054
AvaI CYCGRG 4 cut(s) 802, 890, 1292, 2393
AvaII GGWCC 6 cut(s) 608, 886, 1073, 1274, 1870, 2760
AxyI CCTNAGG 1 cut(s) 1874
BaeGI GKGCMC 1 cut(s) 1325
BalI TGGCCA 3 cut(s) 702, 1035, 1467
BamHI GGATCC 1 cut(s) 1878
BanI GGYRCC 3 cut(s) 7, 115, 2066
BanII GRGCYC 2 cut(s) 1227, 1516
BbsI GAAGAC 3 cut(s) 364, 941, 2606
Bbv12I GWGCWC 5 cut(s) 463, 1227, 1516, 1735, 2329
BccI CCATC 7 cut(s) 301, 428, 538, 1087, 1706, 1993, 2208
BcgI CGANNNNNNTGC 2 cut(s) 881, 915
BciT130I CCWGG 3 cut(s) 589, 615, 2096
BciVI GTATCC 1 cut(s) 973
BclI TGATCA 1 cut(s) 1749
BcnI CCSGG 2 cut(s) 1057, 2664
BcoDI GTCTC 3 cut(s) 782, 928, 1208
BcuI ACTAGT 1 cut(s) 938
BfaI CTAG 7 cut(s) 641, 726, 939, 1953, 2055, 2204, 2280
BfmI CTRYAG 1 cut(s) 1199
BfoI RGCGCY 2 cut(s) 11, 119
BfuAI ACCTGC 2 cut(s) 220, 2720
BfuI GTATCC 1 cut(s) 973
Bme1390I CCNGG 5 cut(s) 589, 615, 1057, 2096, 2664
Bme18I GGWCC 6 cut(s) 608, 886, 1073, 1274, 1870, 2760
BmeT110I CYCGRG 4 cut(s) 802, 890, 1292, 2393
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 7 cut(s) 31, 608, 886, 1073, 1274, 1870, 2760
BmrFI CCNGG 5 cut(s) 589, 615, 1057, 2096, 2664
BmrI ACTGGG 1 cut(s) 28
BmsI GCATC 5 cut(s) 210, 889, 1136, 2127, 2389
BmtI GCTAGC 1 cut(s) 2058
BmuI ACTGGG 1 cut(s) 28
BpiI GAAGAC 3 cut(s) 364, 941, 2606
BpmI CTGGAG 2 cut(s) 597, 1929
Bpu14I TTCGAA 1 cut(s) 1302
BpuEI CTTGAG 4 cut(s) 373, 838, 947, 2147
BpuMI CCSGG 2 cut(s) 1057, 2664
BsaBI GATNNNNATC 2 cut(s) 1910, 2502
BsaHI GRCGYC 5 cut(s) 8, 86, 116, 819, 2721
BsaJI CCNNGG 5 cut(s) 1056, 1182, 1270, 2095, 2132
BsaWI WCCGGW 1 cut(s) 1028
Bsc4I CCNNNNNNNGG 8 cut(s) 48, 604, 620, 841, 1249, 2016, 2395, 2519
Bse1I ACTGG 4 cut(s) 34, 1785, 2309, 2746
Bse21I CCTNAGG 1 cut(s) 1874
Bse3DI GCAATG 3 cut(s) 1791, 2022, 2364
Bse8I GATNNNNATC 2 cut(s) 1910, 2502
BseBI CCWGG 3 cut(s) 589, 615, 2096
BseDI CCNNGG 5 cut(s) 1056, 1182, 1270, 2095, 2132
BseJI GATNNNNATC 2 cut(s) 1910, 2502
BseLI CCNNNNNNNGG 8 cut(s) 48, 604, 620, 841, 1249, 2016, 2395, 2519
BseMI GCAATG 3 cut(s) 1791, 2022, 2364
BseMII CTCAG 4 cut(s) 933, 939, 1422, 1888
BseNI ACTGG 4 cut(s) 34, 1785, 2309, 2746
BseRI GAGGAG 4 cut(s) 91, 170, 1030, 2261
BseSI GKGCMC 1 cut(s) 1325
BseYI CCCAGC 3 cut(s) 57, 81, 280
BsgI GTGCAG 1 cut(s) 639
Bsh1236I CGCG 3 cut(s) 1047, 1279, 1281
Bsh1285I CGRYCG 1 cut(s) 2187
BshFI GGCC 6 cut(s) 32, 702, 930, 1035, 1445, 1467
BshNI GGYRCC 3 cut(s) 7, 115, 2066
BsiEI CGRYCG 1 cut(s) 2187
BsiHKAI GWGCWC 5 cut(s) 463, 1227, 1516, 1735, 2329
BsiHKCI CYCGRG 4 cut(s) 802, 890, 1292, 2393
BsiSI CCGG 8 cut(s) 49, 122, 873, 884, 1029, 1056, 1211, 2664
BslFI GGGAC 5 cut(s) 380, 819, 1714, 1993, 2773
BslI CCNNNNNNNGG 8 cut(s) 48, 604, 620, 841, 1249, 2016, 2395, 2519
BsmAI GTCTC 3 cut(s) 782, 928, 1208
BsmBI CGTCTC 2 cut(s) 782, 1208
BsmFI GGGAC 5 cut(s) 380, 819, 1714, 1993, 2773
BsmI GAATGC 3 cut(s) 291, 902, 1979
BsnI GGCC 6 cut(s) 32, 702, 930, 1035, 1445, 1467
BsoBI CYCGRG 4 cut(s) 802, 890, 1292, 2393
Bsp119I TTCGAA 1 cut(s) 1302
Bsp1286I GDGCHC 6 cut(s) 463, 1227, 1325, 1516, 1735, 2329
Bsp1407I TGTACA 1 cut(s) 1620
Bsp19I CCATGG 1 cut(s) 1182
BspACI CCGC 8 cut(s) 5, 119, 141, 145, 169, 176, 187, 1277
BspANI GGCC 6 cut(s) 32, 702, 930, 1035, 1445, 1467
BspCNI CTCAG 4 cut(s) 932, 938, 1423, 1887
BspFNI CGCG 3 cut(s) 1047, 1279, 1281
BspHI TCATGA 2 cut(s) 906, 2190
BspMAI CTGCAG 1 cut(s) 1203
BspMI ACCTGC 2 cut(s) 220, 2720
BspOI GCTAGC 1 cut(s) 2058
BspPI GGATC 9 cut(s) 175, 395, 541, 1383, 1873, 1886, 1919, 2228, 2511
BspT104I TTCGAA 1 cut(s) 1302
BspT107I GGYRCC 3 cut(s) 7, 115, 2066
BsrBI CCGCTC 1 cut(s) 141
BsrDI GCAATG 3 cut(s) 1791, 2022, 2364
BsrGI TGTACA 1 cut(s) 1620
BsrI ACTGG 4 cut(s) 34, 1785, 2309, 2746
BssECI CCNNGG 5 cut(s) 1056, 1182, 1270, 2095, 2132
BssNI GRCGYC 5 cut(s) 8, 86, 116, 819, 2721
BssT1I CCWWGG 3 cut(s) 1182, 1270, 2132
Bst2UI CCWGG 3 cut(s) 589, 615, 2096
Bst4CI ACNGT 9 cut(s) 781, 1121, 1672, 1705, 1737, 1792, 1971, 2257, 2470
Bst6I CTCTTC 3 cut(s) 853, 1200, 2349
BstACI GRCGYC 5 cut(s) 8, 86, 116, 819, 2721
BstAPI GCANNNNNTGC 1 cut(s) 1580
BstAUI TGTACA 1 cut(s) 1620
BstBI TTCGAA 1 cut(s) 1302
BstDEI CTNAG 8 cut(s) 362, 671, 919, 925, 1431, 1679, 1874, 2790
BstDSI CCRYGG 1 cut(s) 1182
BstFNI CGCG 3 cut(s) 1047, 1279, 1281
BstH2I RGCGCY 2 cut(s) 11, 119
BstHHI GCGC 7 cut(s) 10, 118, 1047, 1210, 1281, 1608, 2222
BstMAI GTCTC 3 cut(s) 782, 928, 1208
BstMCI CGRYCG 1 cut(s) 2187
BstNI CCWGG 3 cut(s) 589, 615, 2096
BstNSI RCATGY 3 cut(s) 738, 1578, 1654
BstSCI CCNGG 5 cut(s) 587, 613, 1055, 2094, 2662
BstSFI CTRYAG 1 cut(s) 1199
BstSLI GKGCMC 1 cut(s) 1325
BstUI CGCG 3 cut(s) 1047, 1279, 1281
BstV2I GAAGAC 3 cut(s) 364, 941, 2606
BstX2I RGATCY 3 cut(s) 546, 1878, 2233
BstYI RGATCY 3 cut(s) 546, 1878, 2233
Bsu36I CCTNAGG 1 cut(s) 1874
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 6 cut(s) 32, 702, 930, 1035, 1445, 1467
BtgI CCRYGG 1 cut(s) 1182
BtgZI GCGATG 1 cut(s) 678
BtrI CACGTC 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 461
BtsIMutI CAGTG 6 cut(s) 461, 574, 786, 1733, 2302, 2475
BveI ACCTGC 2 cut(s) 220, 2720
CaiI CAGNNNCTG 2 cut(s) 190, 235
CciI TCATGA 2 cut(s) 906, 2190
CfoI GCGC 7 cut(s) 10, 118, 1047, 1210, 1281, 1608, 2222
Cfr13I GGNCC 7 cut(s) 31, 608, 886, 1073, 1274, 1870, 2760
CseI GACGC 3 cut(s) 75, 235, 808
Csp6I GTAC 4 cut(s) 1267, 1621, 2067, 2170
CviQI GTAC 4 cut(s) 1267, 1621, 2067, 2170
DdeI CTNAG 8 cut(s) 362, 671, 919, 925, 1431, 1679, 1874, 2790
DinI GGCGCC 2 cut(s) 9, 117
EaeI YGGCCR 3 cut(s) 700, 1033, 1465
Eam1104I CTCTTC 3 cut(s) 853, 1200, 2349
EarI CTCTTC 3 cut(s) 853, 1200, 2349
Ecl136II GAGCTC 2 cut(s) 1225, 1514
Eco130I CCWWGG 3 cut(s) 1182, 1270, 2132
Eco147I AGGCCT 1 cut(s) 1445
Eco24I GRGCYC 2 cut(s) 1227, 1516
Eco32I GATATC 1 cut(s) 994
Eco47I GGWCC 6 cut(s) 608, 886, 1073, 1274, 1870, 2760
Eco53kI GAGCTC 2 cut(s) 1225, 1514
Eco57I CTGAAG 3 cut(s) 1432, 1726, 2466
Eco81I CCTNAGG 1 cut(s) 1874
Eco88I CYCGRG 4 cut(s) 802, 890, 1292, 2393
EcoICRI GAGCTC 2 cut(s) 1225, 1514
EcoO109I RGGNCCY 2 cut(s) 608, 1870
EcoRI GAATTC 1 cut(s) 2198
EcoRII CCWGG 3 cut(s) 587, 613, 2094
EcoRV GATATC 1 cut(s) 994
EcoT14I CCWWGG 3 cut(s) 1182, 1270, 2132
EcoT22I ATGCAT 2 cut(s) 904, 1151
EcoT38I GRGCYC 2 cut(s) 1227, 1516
EgeI GGCGCC 2 cut(s) 9, 117
EheI GGCGCC 2 cut(s) 9, 117
ErhI CCWWGG 3 cut(s) 1182, 1270, 2132
Esp3I CGTCTC 2 cut(s) 782, 1208
FalI AAGNNNNNCTT 2 cut(s) 2610, 2642
FaqI GGGAC 5 cut(s) 380, 819, 1714, 1993, 2773
FauI CCCGC 1 cut(s) 134
FbaI TGATCA 1 cut(s) 1749
FblI GTMKAC 1 cut(s) 38
FriOI GRGCYC 2 cut(s) 1227, 1516
FspBI CTAG 7 cut(s) 641, 726, 939, 1953, 2055, 2204, 2280
GlaI GCGC 7 cut(s) 9, 117, 1046, 1209, 1280, 1607, 2221
GsaI CCCAGC 3 cut(s) 61, 85, 284
GsuI CTGGAG 2 cut(s) 597, 1929
HaeII RGCGCY 2 cut(s) 11, 119
HaeIII GGCC 6 cut(s) 32, 702, 930, 1035, 1445, 1467
HapII CCGG 8 cut(s) 49, 122, 873, 884, 1029, 1056, 1211, 2664
HgaI GACGC 3 cut(s) 75, 235, 808
HhaI GCGC 7 cut(s) 10, 118, 1047, 1210, 1281, 1608, 2222
Hin1I GRCGYC 5 cut(s) 8, 86, 116, 819, 2721
Hin6I GCGC 7 cut(s) 8, 116, 1045, 1208, 1279, 1606, 2220
HinP1I GCGC 7 cut(s) 8, 116, 1045, 1208, 1279, 1606, 2220
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 2 cut(s) 521, 656
HinfI GANTC 6 cut(s) 876, 1314, 1898, 2286, 2498, 2602
HpaII CCGG 8 cut(s) 49, 122, 873, 884, 1029, 1056, 1211, 2664
HphI GGTGA 3 cut(s) 265, 1016, 2507
Hpy166II GTNNAC 7 cut(s) 39, 90, 268, 1165, 1267, 1621, 2569
Hpy8I GTNNAC 7 cut(s) 39, 90, 268, 1165, 1267, 1621, 2569
Hpy99I CGWCG 2 cut(s) 26, 824
HpyAV CCTTC 8 cut(s) 316, 594, 1247, 1366, 1456, 2426, 2545, 2636
HpyCH4III ACNGT 9 cut(s) 781, 1121, 1672, 1705, 1737, 1792, 1971, 2257, 2470
HpyCH4IV ACGT 6 cut(s) 197, 270, 791, 808, 1217, 2721
HpyF3I CTNAG 8 cut(s) 362, 671, 919, 925, 1431, 1679, 1874, 2790
HpySE526I ACGT 6 cut(s) 197, 270, 791, 808, 1217, 2721
Hsp92I GRCGYC 5 cut(s) 8, 86, 116, 819, 2721
HspAI GCGC 7 cut(s) 8, 116, 1045, 1208, 1279, 1606, 2220
KasI GGCGCC 2 cut(s) 7, 115
KpnI GGTACC 1 cut(s) 2070
Ksp22I TGATCA 1 cut(s) 1749
LmnI GCTCC 8 cut(s) 78, 138, 453, 532, 1730, 1948, 2217, 2324
LweI GCATC 5 cut(s) 210, 889, 1136, 2127, 2389
MaeI CTAG 7 cut(s) 641, 726, 939, 1953, 2055, 2204, 2280
MaeII ACGT 6 cut(s) 197, 270, 791, 808, 1217, 2721
MaeIII GTNAC 9 cut(s) 253, 271, 636, 688, 946, 1048, 1177, 1360, 1531
MbiI CCGCTC 1 cut(s) 141
MfeI CAATTG 2 cut(s) 1157, 2031
MflI RGATCY 3 cut(s) 546, 1878, 2233
MhlI GDGCHC 6 cut(s) 463, 1227, 1325, 1516, 1735, 2329
MlsI TGGCCA 3 cut(s) 702, 1035, 1467
MluNI TGGCCA 3 cut(s) 702, 1035, 1467
Mly113I GGCGCC 2 cut(s) 8, 116
MlyI GAGTC 1 cut(s) 2596
MmeI TCCRAC 3 cut(s) 774, 802, 2563
Mox20I TGGCCA 3 cut(s) 702, 1035, 1467
Mph1103I ATGCAT 2 cut(s) 904, 1151
MroXI GAANNNNTTC 2 cut(s) 2198, 2573
MscI TGGCCA 3 cut(s) 702, 1035, 1467
Msp20I TGGCCA 3 cut(s) 702, 1035, 1467
MspA1I CMGCKG 3 cut(s) 187, 1481, 1949
MspI CCGG 8 cut(s) 49, 122, 873, 884, 1029, 1056, 1211, 2664
MspR9I CCNGG 5 cut(s) 589, 615, 1057, 2096, 2664
MunI CAATTG 2 cut(s) 1157, 2031
Mva1269I GAATGC 3 cut(s) 291, 902, 1979
MvaI CCWGG 3 cut(s) 589, 615, 2096
MvnI CGCG 3 cut(s) 1047, 1279, 1281
NarI GGCGCC 2 cut(s) 8, 116
NciI CCSGG 2 cut(s) 1057, 2664
NcoI CCATGG 1 cut(s) 1182
NheI GCTAGC 1 cut(s) 2054
NmuCI GTSAC 7 cut(s) 253, 271, 688, 946, 1048, 1360, 1531
NsiI ATGCAT 2 cut(s) 904, 1151
NspI RCATGY 3 cut(s) 738, 1578, 1654
NspV TTCGAA 1 cut(s) 1302
PacI TTAATTAA 1 cut(s) 519
PaeR7I CTCGAG 1 cut(s) 1292
PagI TCATGA 2 cut(s) 906, 2190
PaqCI CACCTGC 1 cut(s) 220
PceI AGGCCT 1 cut(s) 1445
PciI ACATGT 1 cut(s) 734
PcsI WCGNNNNNNNCGW 2 cut(s) 1299, 1643
PctI GAATGC 3 cut(s) 291, 902, 1979
PdmI GAANNNNTTC 2 cut(s) 2198, 2573
PfeI GAWTC 5 cut(s) 876, 1314, 1898, 2286, 2498
PflMI CCANNNNNTGG 1 cut(s) 841
PfoI TCCNGGA 1 cut(s) 587
Ple19I CGATCG 1 cut(s) 2187
PleI GAGTC 1 cut(s) 2596
PluTI GGCGCC 2 cut(s) 11, 119
PpsI GAGTC 1 cut(s) 2596
PpuMI RGGWCCY 2 cut(s) 608, 1870
PscI ACATGT 1 cut(s) 734
PshBI ATTAAT 1 cut(s) 515
Psp124BI GAGCTC 2 cut(s) 1227, 1516
Psp5II RGGWCCY 2 cut(s) 608, 1870
Psp6I CCWGG 3 cut(s) 587, 613, 2094
PspFI CCCAGC 3 cut(s) 57, 81, 280
PspGI CCWGG 3 cut(s) 587, 613, 2094
PspPI GGNCC 7 cut(s) 31, 608, 886, 1073, 1274, 1870, 2760
PspPPI RGGWCCY 2 cut(s) 608, 1870
PspXI VCTCGAGB 1 cut(s) 1292
PstI CTGCAG 1 cut(s) 1203
PstNI CAGNNNCTG 2 cut(s) 190, 235
PsuI RGATCY 3 cut(s) 546, 1878, 2233
PvuI CGATCG 1 cut(s) 2187
PvuII CAGCTG 2 cut(s) 1481, 1949
RsaI GTAC 4 cut(s) 1268, 1622, 2068, 2171
RsaNI GTAC 4 cut(s) 1267, 1621, 2067, 2170
SacI GAGCTC 2 cut(s) 1227, 1516
SalI GTCGAC 1 cut(s) 37
Sau96I GGNCC 7 cut(s) 31, 608, 886, 1073, 1274, 1870, 2760
SchI GAGTC 1 cut(s) 2596
ScrFI CCNGG 5 cut(s) 589, 615, 1057, 2096, 2664
SduI GDGCHC 6 cut(s) 463, 1227, 1325, 1516, 1735, 2329
SfaNI GCATC 5 cut(s) 210, 889, 1136, 2127, 2389
SfcI CTRYAG 1 cut(s) 1199
SfoI GGCGCC 2 cut(s) 9, 117
Sfr274I CTCGAG 1 cut(s) 1292
SfuI TTCGAA 1 cut(s) 1302
SinI GGWCC 6 cut(s) 608, 886, 1073, 1274, 1870, 2760
SlaI CTCGAG 1 cut(s) 1292
SmlI CTYRAG 5 cut(s) 352, 853, 962, 1292, 2126
SmoI CTYRAG 5 cut(s) 352, 853, 962, 1292, 2126
SpeI ACTAGT 1 cut(s) 938
SseBI AGGCCT 1 cut(s) 1445
SsiI CCGC 8 cut(s) 5, 119, 141, 145, 169, 176, 187, 1277
SspDI GGCGCC 2 cut(s) 7, 115
SspI AATATT 1 cut(s) 2670
SspMI CTAG 7 cut(s) 641, 726, 939, 1953, 2055, 2204, 2280
SstI GAGCTC 2 cut(s) 1227, 1516
StuI AGGCCT 1 cut(s) 1445
StyD4I CCNGG 5 cut(s) 587, 613, 1055, 2094, 2662
StyI CCWWGG 3 cut(s) 1182, 1270, 2132
TaaI ACNGT 9 cut(s) 781, 1121, 1672, 1705, 1737, 1792, 1971, 2257, 2470
TaiI ACGT 6 cut(s) 200, 273, 794, 811, 1220, 2724
TaqI TCGA 6 cut(s) 38, 390, 412, 829, 1293, 1302
TatI WGTACW 1 cut(s) 1620
TauI GCSGC 5 cut(s) 8, 121, 148, 179, 190
TfiI GAWTC 5 cut(s) 876, 1314, 1898, 2286, 2498
TscAI CASTG 6 cut(s) 468, 574, 786, 1740, 2309, 2475
TseFI GTSAC 7 cut(s) 253, 271, 688, 946, 1048, 1360, 1531
Tsp45I GTSAC 7 cut(s) 253, 271, 688, 946, 1048, 1360, 1531
TspGWI ACGGA 1 cut(s) 2187
TspRI CASTG 6 cut(s) 468, 574, 786, 1740, 2309, 2475
Van91I CCANNNNNTGG 1 cut(s) 841
VpaK11BI GGWCC 6 cut(s) 608, 886, 1073, 1274, 1870, 2760
VspI ATTAAT 1 cut(s) 515
XapI RAATTY 3 cut(s) 393, 1721, 2198
XbaI TCTAGA 1 cut(s) 2279
XceI RCATGY 3 cut(s) 738, 1578, 1654
XhoI CTCGAG 1 cut(s) 1292
XmiI GTMKAC 1 cut(s) 38
XmnI GAANNNNTTC 2 cut(s) 2198, 2573
XspI CTAG 7 cut(s) 641, 726, 939, 1953, 2055, 2204, 2280
ZraI GACGTC 1 cut(s) 2722
Zsp2I ATGCAT 2 cut(s) 904, 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.