pycom07g05130
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
4395828 .. 4396291
464 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g05130.1

Sequence Viewer

Length: 372 bp
ATGCATGAGTTCATCAAAGTGGCGATTGAGACAGTTTACGTTGCAATCCAAACTCCGGCGTATGGTCTCATCCTCTTTTCAATGATCGGGTTCGATTGGCGCGCCGACAAGTTTTTCCGGTTCTACTACTTTAAATTGACGTGCTTTATCTGCTTCACATTGTATGGCATGATGCTTGTAGCTCCCTCTCATGCCAGCTTCTGGAATCTCTTCTCCGGTTTCCTCCCCCCAGGATGGTATGCATCCAACGCAGCTCAAGCCGGTAATATGTTAAAGATTTTCTCATTACAAATTCTACAGCACGACACGAATGCTAATCACTTTTGTGTGACTTGGGACTCGGCACTAGCATCTGACAGAATTACTCGCTAG

Protein Analysis

124

Amino Acids

14.19

Weight (kDa)

7.75

Isoelectric Point (pI)

29.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 5 - 61 1.4e-06 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 201
AccII CGCG 1 cut(s) 102
AcsI RAATTY 1 cut(s) 291
AfiI CCNNNNNNNGG 4 cut(s) 55, 62, 201, 234
AgsI TTSAA 1 cut(s) 81
AjiI CACGTC 1 cut(s) 141
AjnI CCWGG 1 cut(s) 229
AleI CACNNNNGTG 1 cut(s) 324
AluBI AGCT 3 cut(s) 182, 198, 254
AluI AGCT 3 cut(s) 182, 198, 254
Alw26I GTCTC 2 cut(s) 23, 71
AlwNI CAGNNNCTG 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 291
AscI GGCGCGCC 1 cut(s) 100
Asp700I GAANNNNTTC 1 cut(s) 209
AspLEI GCGC 2 cut(s) 102, 104
BbvI GCAGC 1 cut(s) 263
BccI CCATC 1 cut(s) 228
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 23, 71
BfaI CTAG 2 cut(s) 347, 370
BfmI CTRYAG 1 cut(s) 296
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 231
BmgBI CACGTC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 3 cut(s) 162, 251, 359
BpuEI CTTGAG 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 229
BsaWI WCCGGW 2 cut(s) 117, 215
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 62, 201, 234
Bse118I RCCGGY 1 cut(s) 260
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 3 cut(s) 69, 239, 242
BseLI CCNNNNNNNGG 4 cut(s) 55, 62, 201, 234
BsePI GCGCGC 1 cut(s) 100
BseXI GCAGC 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 102
BsiSI CCGG 4 cut(s) 56, 118, 216, 261
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 4 cut(s) 55, 62, 201, 234
BsmAI GTCTC 2 cut(s) 23, 71
BsmFI GGGAC 1 cut(s) 350
BsmI GAATGC 1 cut(s) 316
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 84
BspFNI CGCG 1 cut(s) 102
BspTNI GGTCTC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 229
BssHII GCGCGC 1 cut(s) 100
BssMI GATC 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 102, 196
BstF5I GGATG 3 cut(s) 69, 239, 242
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 2 cut(s) 102, 104
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 2 cut(s) 23, 71
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 3 cut(s) 150, 248, 257
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 296
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 263
BtrI CACGTC 1 cut(s) 141
BtsCI GGATG 3 cut(s) 69, 239, 242
Cac8I GCNNGC 2 cut(s) 102, 196
CaiI CAGNNNCTG 1 cut(s) 201
CfoI GCGC 2 cut(s) 102, 104
Cfr10I RCCGGY 1 cut(s) 260
CviAII CATG 3 cut(s) 5, 169, 191
CviJI RGCY 4 cut(s) 182, 198, 254, 260
CviKI_1 RGCY 4 cut(s) 182, 198, 254, 260
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
DraI TTTAAA 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco31I GGTCTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 229
EcoT22I ATGCAT 2 cut(s) 6, 244
FaeI CATG 3 cut(s) 8, 172, 194
FaiI YATR 7 cut(s) 6, 63, 165, 170, 192, 240, 269
FaqI GGGAC 1 cut(s) 350
FatI CATG 3 cut(s) 4, 168, 190
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 3 cut(s) 56, 229, 246
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 2 cut(s) 347, 370
GlaI GCGC 2 cut(s) 101, 103
GluI GCNGC 1 cut(s) 252
HapII CCGG 4 cut(s) 56, 118, 216, 261
HhaI GCGC 2 cut(s) 102, 104
Hin1II CATG 3 cut(s) 8, 172, 194
Hin6I GCGC 2 cut(s) 100, 102
HinP1I GCGC 2 cut(s) 100, 102
HinfI GANTC 2 cut(s) 205, 338
HpaII CCGG 4 cut(s) 56, 118, 216, 261
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 2 cut(s) 39, 140
HpyCH4V TGCA 3 cut(s) 4, 44, 242
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 248, 257
HpySE526I ACGT 2 cut(s) 39, 140
Hsp92II CATG 3 cut(s) 8, 172, 194
HspAI GCGC 2 cut(s) 100, 102
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 8 cut(s) 69, 131, 187, 208, 216, 229, 243, 274
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 3 cut(s) 162, 251, 359
MaeI CTAG 2 cut(s) 347, 370
MaeII ACGT 2 cut(s) 39, 140
MaeIII GTNAC 1 cut(s) 328
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 1 cut(s) 202
MluCI AATT 3 cut(s) 134, 291, 360
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 3 cut(s) 83, 196, 233
Mph1103I ATGCAT 2 cut(s) 6, 244
MroXI GAANNNNTTC 1 cut(s) 209
MseI TTAA 2 cut(s) 132, 272
MslI CAYNNNNRTG 2 cut(s) 17, 324
MspI CCGG 4 cut(s) 56, 118, 216, 261
MspR9I CCNGG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 3 cut(s) 150, 248, 257
NdeII GATC 1 cut(s) 84
NlaIII CATG 3 cut(s) 8, 172, 194
NmeAIII GCCGAG 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 328
NsiI ATGCAT 2 cut(s) 6, 244
OliI CACNNNNGTG 1 cut(s) 324
PalAI GGCGCGCC 1 cut(s) 100
PauI GCGCGC 1 cut(s) 100
PctI GAATGC 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 201
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 201
PteI GCGCGC 1 cut(s) 100
RseI CAYNNNNRTG 2 cut(s) 17, 324
SaqAI TTAA 2 cut(s) 132, 272
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 1 cut(s) 84
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 231
SetI ASST 5 cut(s) 42, 143, 184, 200, 256
SfaNI GCATC 3 cut(s) 162, 251, 359
SfcI CTRYAG 1 cut(s) 296
SgsI GGCGCGCC 1 cut(s) 100
SmiMI CAYNNNNRTG 2 cut(s) 17, 324
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 3 cut(s) 134, 291, 360
SspMI CTAG 2 cut(s) 347, 370
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 2 cut(s) 42, 143
TaqI TCGA 1 cut(s) 93
TasI AATT 3 cut(s) 134, 291, 360
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 132, 272
Tru9I TTAA 2 cut(s) 132, 272
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 328
Van91I CCANNNNNTGG 1 cut(s) 201
XapI RAATTY 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 2 cut(s) 347, 370
Zsp2I ATGCAT 2 cut(s) 6, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.