Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000245

Physical Location & Seq

Genomic Coordinates Forward (+)

48672427 .. 48673731

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00033590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTATGGAATGATGGTGGTTGCCCTAACTCCTGGCCATCAAATTGCTGCAATTGTCATGGGCTTCTTCATGAGTTTCTGGAATTTGTTCTCCGGTTTCCTCCTCCCAGATCGTTTGGTGTTTTATTGGAAGCTTGAGCAGTTTAGCGATTTGTTGGTGCGGGGAAAATCAAGGAGACTGATTTTTGTTTTGAGCTCTCCTTTGTTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

70

Amino Acids

8.15

Weight (kDa)

9.52

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66950 AT2G36380
fragaria_vesca	FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica	MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica	Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis	pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis	RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata	RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora	Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa	Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha	Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana	Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	2 cut(s)	133, 195
AluI	AGCT	2 cut(s)	133, 195
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	169
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	2 cut(s)	7, 45
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	211
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	155
BsaWI	WCCGGW	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	69
BssMI	GATC	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	33
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	36
CciI	TCATGA	1 cut(s)	69
CviAII	CATG	2 cut(s)	58, 70
CviJI	RGCY	4 cut(s)	36, 63, 133, 195
CviKI_1	RGCY	4 cut(s)	36, 63, 133, 195
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	2 cut(s)	61, 73
FaiI	YATR	3 cut(s)	6, 59, 71
FatI	CATG	2 cut(s)	57, 69
FauI	CCCGC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	48
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	211
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	2 cut(s)	61, 73
HindIII	AAGCTT	1 cut(s)	131
HpaII	CCGG	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	70, 79
HpyCH4V	TGCA	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	61, 73
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	5 cut(s)	18, 45, 64, 106, 120
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	211
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	1 cut(s)	58
MfeI	CAATTG	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	197
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	3 cut(s)	42, 51, 82
MluNI	TGGCCA	1 cut(s)	36
MnlI	CCTC	2 cut(s)	110, 113
Mox20I	TGGCCA	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	36
Msp20I	TGGCCA	1 cut(s)	36
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	33
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	61, 73
PagI	TCATGA	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	197
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	2 cut(s)	135, 197
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	3 cut(s)	42, 51, 82
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	1 cut(s)	211
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	31
TasI	AATT	3 cut(s)	42, 51, 82
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	58
XapI	RAATTY	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.