Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000245

Physical Location & Seq

Genomic Coordinates Reverse (-)

33448116 .. 33448307

Gene Structure 192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0291200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGAAGGATCAATGAGTACTATGATCAGACTCAACCACTCTAATTGGATTACATGGAAGCCAAAAATGAAGGATATTCTCTATTGCAAAGATTTTCATGAGCCAATCGAAGGAGAAGAGGCCAAGCCGAAAGGGACTTCGGATACAAATTGGACGAAGATGAACTGCAAATCCATCGGTCATATACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

63

Amino Acids

7.34

Weight (kDa)

7.81

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66950 AT2G36380
fragaria_vesca	FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica	MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica	Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis	pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis	RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata	RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora	Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa	Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha	Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana	Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	16
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	110
AloI	GAACNNNNNNTCC	2 cut(s)	155, 187
AlwI	GGATC	1 cut(s)	16
AoxI	GGCC	1 cut(s)	120
BccI	CCATC	1 cut(s)	182
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciVI	GTATCC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	24
BfuI	GTATCC	1 cut(s)	136
BmcAI	AGTACT	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	8, 24
BspANI	GGCC	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	97
BspPI	GGATC	1 cut(s)	16
BssMI	GATC	2 cut(s)	8, 24
Bst6I	CTCTTC	1 cut(s)	111
BstKTI	GATC	2 cut(s)	11, 27
BstMBI	GATC	2 cut(s)	8, 24
BsuI	GTATCC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	122
CciI	TCATGA	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	18
CspCI	CAANNNNNGTGG	2 cut(s)	26, 61
CviAII	CATG	2 cut(s)	54, 98
CviJI	RGCY	4 cut(s)	61, 103, 122, 127
CviKI_1	RGCY	4 cut(s)	61, 103, 122, 127
CviQI	GTAC	1 cut(s)	18
DpnI	GATC	2 cut(s)	10, 26
DpnII	GATC	2 cut(s)	8, 24
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
FaeI	CATG	2 cut(s)	57, 101
FaiI	YATR	6 cut(s)	23, 55, 99, 183, 185, 190
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	2 cut(s)	53, 97
FbaI	TGATCA	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	57, 101
HinfI	GANTC	1 cut(s)	30
Hpy188I	TCNGA	2 cut(s)	29, 142
Hpy188III	TCNNGA	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	64, 104
HpyCH4V	TGCA	2 cut(s)	87, 168
Hsp92II	CATG	2 cut(s)	57, 101
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	8, 24
MalI	GATC	2 cut(s)	10, 26
MboI	GATC	2 cut(s)	8, 24
MboII	GAAGA	2 cut(s)	128, 169
MluCI	AATT	2 cut(s)	43, 148
MlyI	GAGTC	1 cut(s)	24
MnlI	CCTC	1 cut(s)	112
NdeII	GATC	2 cut(s)	8, 24
NlaIII	CATG	2 cut(s)	57, 101
PagI	TCATGA	1 cut(s)	97
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	8, 24
ScaI	AGTACT	1 cut(s)	19
SchI	GAGTC	1 cut(s)	24
SgeI	CNNG	3 cut(s)	66, 110, 136
Sse9I	AATT	2 cut(s)	43, 148
TaqI	TCGA	1 cut(s)	108
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	2 cut(s)	43, 148
TatI	WGTACW	1 cut(s)	17
TspDTI	ATGAA	3 cut(s)	83, 86, 176
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.