Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000245

Physical Location & Seq

Genomic Coordinates Reverse (-)

50339685 .. 50343061

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG243200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTTACAATTTTGGCTGGTGTTCTCCTTCACTGCTCTATTTCACCCAAAGTGCAATGCCATCAGGTTTTTCACCACAATACTCATCGGCGTACTTTTTGGTGTCATCTTCTGGAAGAAAGGAAACGTGTTAGGGAAACAACAAGATATTGTTAACCTTCTGGGAGCAACCTATTCTGCTGTTCTTTTCCTTGGAGCGGGAAATGCTTCTGCTGTGCAATCTGTGGTTGCGATTGAGAGAACAGTTTTCTACCGAGAAAGAGCAGCAGGAATGTATTCAGAGTTGCCTTATGCATTTGCTCAGGTGGCCATTGAGACGATTTATGTTGCTATACAAACCATCATTTATTCCCTTCTTTTATTTACCATGATCGGCTACGAATTTAAAGTTGAGAAATTTTTGTATTTCTACTACTTTATATTCATGTGTTTTACGTACTTCTCAATGTATGGAATGATGGTGGTTGCCCTAACTCCTGGCCATCAAATCGCTGCAATTGTCATGGGCTTCTTCATGAGTTTCTGGAATTTGTTCTCCGGTTTCCTCGTCCCCAGACCGCTTAGAGAGTCTCCTCCTTACTCTCTCGCTCTCTCTGCTAGGTCTGCTTCTAAGCTTCTCTCTCAAGGGAGAAGTGTTGGTAGATTTAGCAATGCTGCAGTAAGTGAAGAGTTGATCACCCCACCTGTTCATATGAATTGCTTGGGAACACAACAGATTGGCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

241

Amino Acids

27.11

Weight (kDa)

9.26

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	15 - 186	4.4e-38	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66950 AT2G36380
fragaria_vesca	FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica	MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica	Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis	pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis	RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata	RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora	Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa	Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha	Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana	Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	197
AciI	CCGC	2 cut(s)	197, 557
AcoI	YGGCCR	2 cut(s)	306, 478
AcsI	RAATTY	3 cut(s)	380, 395, 526
AfaI	GTAC	2 cut(s)	93, 437
AfiI	CCNNNNNNNGG	1 cut(s)	196
AflIII	ACRYGT	1 cut(s)	126
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	1 cut(s)	613
AluI	AGCT	1 cut(s)	613
Alw26I	GTCTC	2 cut(s)	308, 573
AoxI	GGCC	2 cut(s)	306, 478
ApeKI	GCWGC	3 cut(s)	263, 491, 653
ApoI	RAATTY	3 cut(s)	380, 395, 526
Asp700I	GAANNNNTTC	3 cut(s)	205, 274, 530
AsuHPI	GGTGA	3 cut(s)	35, 64, 667
BalI	TGGCCA	2 cut(s)	308, 480
BbvI	GCAGC	3 cut(s)	275, 478, 640
BccI	CCATC	4 cut(s)	68, 347, 451, 489
BciT130I	CCWGG	1 cut(s)	477
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	2 cut(s)	308, 573
BfaI	CTAG	2 cut(s)	597, 724
BfmI	CTRYAG	1 cut(s)	654
BisI	GCNGC	3 cut(s)	264, 492, 654
BlsI	GCNGC	3 cut(s)	265, 493, 655
Bme1390I	CCNGG	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	606
BsaAI	YACGTR	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	719
BsaJI	CCNNGG	1 cut(s)	190
BsaWI	WCCGGW	1 cut(s)	536
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse3DI	GCAATG	2 cut(s)	61, 655
Bse8I	GATNNNNATC	1 cut(s)	719
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	190
BseJI	GATNNNNATC	1 cut(s)	719
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMI	GCAATG	2 cut(s)	61, 655
BseMII	CTCAG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	561
BseXI	GCAGC	3 cut(s)	275, 478, 640
BshFI	GGCC	2 cut(s)	308, 480
BsiSI	CCGG	1 cut(s)	537
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	2 cut(s)	308, 573
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	2 cut(s)	308, 480
Bsp143I	GATC	2 cut(s)	369, 672
BspACI	CCGC	2 cut(s)	197, 557
BspANI	GGCC	2 cut(s)	308, 480
BspCNI	CTCAG	1 cut(s)	313
BspHI	TCATGA	1 cut(s)	513
BspMAI	CTGCAG	1 cut(s)	658
BsrBI	CCGCTC	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	61, 655
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	2 cut(s)	369, 672
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	660
BstBAI	YACGTR	1 cut(s)	435
BstDEI	CTNAG	3 cut(s)	300, 560, 609
BstKTI	GATC	2 cut(s)	372, 675
BstMAI	GTCTC	2 cut(s)	308, 573
BstMBI	GATC	2 cut(s)	369, 672
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 305, 593, 602
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	475
BstSFI	CTRYAG	1 cut(s)	654
BstSNI	TACGTA	1 cut(s)	435
BstV1I	GCAGC	3 cut(s)	275, 478, 640
BsuRI	GGCC	2 cut(s)	308, 480
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
CciI	TCATGA	1 cut(s)	513
Csp6I	GTAC	2 cut(s)	92, 436
CviAII	CATG	4 cut(s)	367, 424, 502, 514
CviJI	RGCY	6 cut(s)	16, 308, 375, 480, 507, 613
CviKI_1	RGCY	6 cut(s)	16, 308, 375, 480, 507, 613
CviQI	GTAC	2 cut(s)	92, 436
DdeI	CTNAG	3 cut(s)	300, 560, 609
DpnI	GATC	2 cut(s)	371, 674
DpnII	GATC	2 cut(s)	369, 672
DraI	TTTAAA	1 cut(s)	385
EaeI	YGGCCR	2 cut(s)	306, 478
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Eco105I	TACGTA	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	4 cut(s)	370, 427, 505, 517
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	4 cut(s)	366, 423, 501, 513
FauI	CCCGC	1 cut(s)	190
FauNDI	CATATG	1 cut(s)	690
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	3 cut(s)	264, 492, 654
Fsp4HI	GCNGC	3 cut(s)	264, 492, 654
FspBI	CTAG	2 cut(s)	597, 724
GluI	GCNGC	3 cut(s)	264, 492, 654
HaeIII	GGCC	2 cut(s)	308, 480
HapII	CCGG	1 cut(s)	537
Hin1II	CATG	4 cut(s)	370, 427, 505, 517
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	1 cut(s)	566
HpaI	GTTAAC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	537
HphI	GGTGA	3 cut(s)	35, 64, 667
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	3 cut(s)	112, 514, 523
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	37, 167, 362
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	126, 434
HpyCH4V	TGCA	5 cut(s)	54, 217, 293, 494, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 305, 593, 602
HpyF3I	CTNAG	3 cut(s)	300, 560, 609
HpySE526I	ACGT	2 cut(s)	126, 434
Hsp92II	CATG	4 cut(s)	370, 427, 505, 517
Ksp22I	TGATCA	1 cut(s)	672
KspAI	GTTAAC	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	369, 672
LmnI	GCTCC	2 cut(s)	164, 194
Lsp1109I	GCAGC	3 cut(s)	275, 478, 640
MaeI	CTAG	2 cut(s)	597, 724
MaeII	ACGT	2 cut(s)	126, 434
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	371, 674
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	2 cut(s)	369, 672
MboII	GAAGA	4 cut(s)	100, 127, 502, 677
MfeI	CAATTG	1 cut(s)	495
MlsI	TGGCCA	2 cut(s)	308, 480
MluCI	AATT	6 cut(s)	8, 380, 395, 495, 526, 694
MluNI	TGGCCA	2 cut(s)	308, 480
MlyI	GAGTC	1 cut(s)	575
MnlI	CCTC	2 cut(s)	554, 582
Mox20I	TGGCCA	2 cut(s)	308, 480
Mph1103I	ATGCAT	1 cut(s)	295
MroXI	GAANNNNTTC	3 cut(s)	205, 274, 530
MscI	TGGCCA	2 cut(s)	308, 480
MseI	TTAA	2 cut(s)	153, 384
Msp20I	TGGCCA	2 cut(s)	308, 480
MspI	CCGG	1 cut(s)	537
MspR9I	CCNGG	1 cut(s)	477
MunI	CAATTG	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	4 cut(s)	203, 305, 593, 602
NdeI	CATATG	1 cut(s)	690
NdeII	GATC	2 cut(s)	369, 672
NlaIII	CATG	4 cut(s)	370, 427, 505, 517
NsiI	ATGCAT	1 cut(s)	295
PagI	TCATGA	1 cut(s)	513
PdmI	GAANNNNTTC	3 cut(s)	205, 274, 530
PkrI	GCNGC	3 cut(s)	265, 493, 655
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
Ppu21I	YACGTR	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PstI	CTGCAG	1 cut(s)	658
RsaI	GTAC	2 cut(s)	93, 437
RsaNI	GTAC	2 cut(s)	92, 436
SaqAI	TTAA	2 cut(s)	153, 384
SatI	GCNGC	3 cut(s)	264, 492, 654
Sau3AI	GATC	2 cut(s)	369, 672
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	477
SetI	ASST	9 cut(s)	68, 129, 159, 173, 306, 437, 602, 615, 685
SfcI	CTRYAG	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
SnaBI	TACGTA	1 cut(s)	435
Sse9I	AATT	6 cut(s)	8, 380, 395, 495, 526, 694
SsiI	CCGC	2 cut(s)	197, 557
SspMI	CTAG	2 cut(s)	597, 724
StyD4I	CCNGG	1 cut(s)	475
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	2 cut(s)	129, 437
TasI	AATT	6 cut(s)	8, 380, 395, 495, 526, 694
Tru1I	TTAA	2 cut(s)	153, 384
Tru9I	TTAA	2 cut(s)	153, 384
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	3 cut(s)	263, 491, 653
TspDTI	ATGAA	4 cut(s)	412, 502, 677, 707
TspRI	CASTG	1 cut(s)	37
XapI	RAATTY	3 cut(s)	380, 395, 526
XmnI	GAANNNNTTC	3 cut(s)	205, 274, 530
XspI	CTAG	2 cut(s)	597, 724
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.