Rh5AG361000

Pleiotropic drug resistance protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000245
Physical Location & Seq
Forward (+)
60740756 .. 60742020
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG361000.1

Sequence Viewer

Length: 1008 bp
ATGGGAAATGGGAAAGTGACTTACTGCGGCCATGAATTTAATGAATTTGTACCTCAGAGAACCTCTGCTTATATTAGCCAGCAAGATCTTCATTATGGTGAGATGACAGTTCGTGAAACATTTGATTTCTCCGGACGTTGCCTAGGAGTTGGAACAAGGTATGATATACTAGTAGAGTTGTCTAGACGGGAGAAAGATGCAGGTATCAAACCAGATCCTTGGATTGATGCATACATGAAAGCCACATCAGTGGTAGGACAGGAAACAAGTTTGATCACAGATTATGTTCTCAAGATACTTGGATTAGATATCTGTGCTGATATTATGGTGGGTGATGACATGAGAAGGGGAATATCTGGTGGACAAAAGAAGCGTGTCACGACTGGAGAAATGTTGGTTGGACCAGCAAAAGCATTTTTCATGGATGAAATATCAACAGGGTTGGACAGTTCCACAACCTTTCAGATTGTCAAATACATGAGACAGATGGTTCATATTTTGGATGTGTCAATGGTCATCTCTCTCTTGCAGCCTGCACCAGAGACGTATGATCTTTTTGATGATGTTATGCTTCTTTCCGAGGGTCAGATTGTTTATCAAGGCCCACGTGAGAATGTCCTTGAGTTCTTTGAATATATGGGATTCAAATGCCCTGACAGAAAAGGTGTTGCAGACTTCTTGCAAGAAGTGACCTCAAGGAAGGACCAGGAACAATACTGGTGTAAGAAGAACCAACCTTACAGATTAGTCACAATATCTGATTTTGTTCGGGCGTTCAGCTCCTTCCATGTTGGCCAACGGCTTGGGGAAGAACTAAGAGTTCCTTATGATAAAAGACATGCCCATCCTGCTGCTTTGGTCAAGGAAAAGTATGGAATATCCAATATGGAGCTCTTCAAAGCATGCTTTGCAAGGGAATGGCTCCTAATGAAGCGGAACTCTTTTGTGTACATATTCAAAACTACACAGATTGCCATCATGGCTACAATTGCTTTGACCGTATTCTGA

Protein Analysis

335

Amino Acids

38.32

Weight (kDa)

6.12

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane_7 PF19055 177 - 228 2.2e-06 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 191
AccIII TCCGGA 1 cut(s) 131
AciI CCGC 2 cut(s) 27, 934
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 2 cut(s) 28, 793
AcsI RAATTY 2 cut(s) 35, 44
AcvI CACGTG 1 cut(s) 608
AfaI GTAC 2 cut(s) 51, 950
AgsI TTSAA 4 cut(s) 632, 646, 898, 958
AhlI ACTAGT 1 cut(s) 169
AjnI CCWGG 1 cut(s) 705
AjuI GAANNNNNNNTTGG 2 cut(s) 381, 413
AleI CACNNNNGTG 1 cut(s) 248
AluBI AGCT 2 cut(s) 780, 892
AluI AGCT 2 cut(s) 780, 892
Alw21I GWGCWC 1 cut(s) 894
Alw26I GTCTC 2 cut(s) 475, 536
AlwI GGATC 1 cut(s) 209
Aor13HI TCCGGA 1 cut(s) 131
AoxI GGCC 3 cut(s) 28, 601, 793
ApeKI GCWGC 2 cut(s) 529, 851
ApoI RAATTY 2 cut(s) 35, 44
AspA2I CCTAGG 1 cut(s) 142
AspS9I GGNCC 3 cut(s) 401, 602, 703
AsuHPI GGTGA 2 cut(s) 110, 344
AvaII GGWCC 2 cut(s) 401, 703
AvrII CCTAGG 1 cut(s) 142
BalI TGGCCA 1 cut(s) 795
BanII GRGCYC 1 cut(s) 894
BbrPI CACGTG 1 cut(s) 608
Bbv12I GWGCWC 1 cut(s) 894
BbvI GCAGC 2 cut(s) 541, 838
BccI CCATC 3 cut(s) 481, 852, 983
BceAI ACGGC 1 cut(s) 815
BciT130I CCWGG 1 cut(s) 707
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 475, 536
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 3 cut(s) 143, 170, 183
BfuAI ACCTGC 1 cut(s) 191
BglI GCCNNNNNGGC 1 cut(s) 980
BglII AGATCT 1 cut(s) 85
BisI GCNGC 3 cut(s) 28, 530, 852
BlnI CCTAGG 1 cut(s) 142
BlsI GCNGC 3 cut(s) 29, 531, 853
Bme1390I CCNGG 1 cut(s) 707
Bme18I GGWCC 2 cut(s) 401, 703
BmgT120I GGNCC 3 cut(s) 401, 602, 703
BmiI GGNNCC 1 cut(s) 923
BmrFI CCNGG 1 cut(s) 707
BmsI GCATC 2 cut(s) 187, 217
BpmI CTGGAG 1 cut(s) 405
BpuEI CTTGAG 3 cut(s) 275, 641, 679
BsaAI YACGTR 1 cut(s) 608
BsaBI GATNNNNATC 1 cut(s) 974
BsaJI CCNNGG 3 cut(s) 142, 218, 579
BsaWI WCCGGW 1 cut(s) 131
Bse1I ACTGG 2 cut(s) 388, 722
Bse8I GATNNNNATC 1 cut(s) 974
BseAI TCCGGA 1 cut(s) 131
BseBI CCWGG 1 cut(s) 707
BseDI CCNNGG 3 cut(s) 142, 218, 579
BseGI GGATG 3 cut(s) 430, 508, 844
BseJI GATNNNNATC 1 cut(s) 974
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 388, 722
BseXI GCAGC 2 cut(s) 541, 838
BsgI GTGCAG 1 cut(s) 519
BshFI GGCC 3 cut(s) 30, 603, 795
BsiHKAI GWGCWC 1 cut(s) 894
BsiSI CCGG 1 cut(s) 132
BsmAI GTCTC 2 cut(s) 475, 536
BsmBI CGTCTC 1 cut(s) 536
BsnI GGCC 3 cut(s) 30, 603, 795
Bsp1286I GDGCHC 1 cut(s) 894
Bsp13I TCCGGA 1 cut(s) 131
Bsp1407I TGTACA 1 cut(s) 948
Bsp143I GATC 4 cut(s) 85, 214, 273, 550
BspACI CCGC 2 cut(s) 27, 934
BspANI GGCC 3 cut(s) 30, 603, 795
BspCNI CTCAG 1 cut(s) 67
BspEI TCCGGA 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 923
BspMI ACCTGC 1 cut(s) 191
BspPI GGATC 1 cut(s) 209
BspQI GCTCTTC 1 cut(s) 899
BsrGI TGTACA 1 cut(s) 948
BsrI ACTGG 2 cut(s) 388, 722
BssECI CCNNGG 3 cut(s) 142, 218, 579
BssMI GATC 4 cut(s) 85, 214, 273, 550
BssT1I CCWWGG 2 cut(s) 142, 218
Bst2UI CCWGG 1 cut(s) 707
Bst4CI ACNGT 3 cut(s) 109, 449, 1000
Bst6I CTCTTC 1 cut(s) 899
BstAPI GCANNNNNTGC 1 cut(s) 908
BstAUI TGTACA 1 cut(s) 948
BstBAI YACGTR 1 cut(s) 608
BstC8I GCNNGC 3 cut(s) 80, 534, 904
BstDEI CTNAG 2 cut(s) 54, 815
BstF5I GGATG 3 cut(s) 430, 508, 844
BstKTI GATC 4 cut(s) 88, 217, 276, 553
BstMAI GTCTC 2 cut(s) 475, 536
BstMBI GATC 4 cut(s) 85, 214, 273, 550
BstMWI GCNNNNNNNGC 4 cut(s) 848, 908, 980, 989
BstNI CCWGG 1 cut(s) 707
BstNSI RCATGY 2 cut(s) 842, 906
BstSCI CCNGG 1 cut(s) 705
BstV1I GCAGC 2 cut(s) 541, 838
BstX2I RGATCY 2 cut(s) 85, 214
BstXI CCANNNNNNTGG 3 cut(s) 219, 250, 803
BstYI RGATCY 2 cut(s) 85, 214
BsuRI GGCC 3 cut(s) 30, 603, 795
BtsCI GGATG 3 cut(s) 430, 508, 844
BtsIMutI CAGTG 1 cut(s) 255
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 3 cut(s) 80, 534, 904
Cfr13I GGNCC 3 cut(s) 401, 602, 703
Csp6I GTAC 2 cut(s) 50, 949
CviAII CATG 9 cut(s) 32, 235, 340, 421, 478, 788, 839, 903, 979
CviQI GTAC 2 cut(s) 50, 949
DdeI CTNAG 2 cut(s) 54, 815
DpnI GATC 4 cut(s) 87, 216, 275, 552
DpnII GATC 4 cut(s) 85, 214, 273, 550
EaeI YGGCCR 2 cut(s) 28, 793
Eam1104I CTCTTC 1 cut(s) 899
EarI CTCTTC 1 cut(s) 899
Ecl136II GAGCTC 1 cut(s) 892
Eco130I CCWWGG 2 cut(s) 142, 218
Eco24I GRGCYC 1 cut(s) 894
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 2 cut(s) 401, 703
Eco53kI GAGCTC 1 cut(s) 892
Eco72I CACGTG 1 cut(s) 608
EcoICRI GAGCTC 1 cut(s) 892
EcoRII CCWGG 1 cut(s) 705
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 2 cut(s) 142, 218
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 2 cut(s) 142, 218
Esp3I CGTCTC 1 cut(s) 536
FaeI CATG 9 cut(s) 35, 238, 343, 424, 481, 791, 842, 906, 982
FalI AAGNNNNNCTT 2 cut(s) 808, 840
FatI CATG 9 cut(s) 31, 234, 339, 420, 477, 787, 838, 902, 978
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 3 cut(s) 28, 530, 852
FokI GGATG 3 cut(s) 437, 515, 831
FriOI GRGCYC 1 cut(s) 894
Fsp4HI GCNGC 3 cut(s) 28, 530, 852
FspBI CTAG 3 cut(s) 143, 170, 183
GluI GCNGC 3 cut(s) 28, 530, 852
GsuI CTGGAG 1 cut(s) 405
HaeIII GGCC 3 cut(s) 30, 603, 795
HapII CCGG 1 cut(s) 132
Hin1II CATG 9 cut(s) 35, 238, 343, 424, 481, 791, 842, 906, 982
HinfI GANTC 1 cut(s) 642
HpaII CCGG 1 cut(s) 132
HphI GGTGA 2 cut(s) 110, 344
Hpy166II GTNNAC 2 cut(s) 362, 949
Hpy188I TCNGA 6 cut(s) 57, 465, 580, 588, 760, 1007
Hpy188III TCNNGA 5 cut(s) 113, 132, 183, 292, 379
Hpy8I GTNNAC 2 cut(s) 362, 949
HpyAV CCTTC 3 cut(s) 339, 694, 793
HpyCH4III ACNGT 3 cut(s) 109, 449, 1000
HpyCH4IV ACGT 3 cut(s) 136, 545, 607
HpyCH4V TGCA 7 cut(s) 200, 230, 529, 536, 671, 682, 911
HpyF10VI GCNNNNNNNGC 4 cut(s) 848, 908, 980, 989
HpyF3I CTNAG 2 cut(s) 54, 815
HpySE526I ACGT 3 cut(s) 136, 545, 607
Hsp92II CATG 9 cut(s) 35, 238, 343, 424, 481, 791, 842, 906, 982
Kpn2I TCCGGA 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 4 cut(s) 85, 214, 273, 550
LguI GCTCTTC 1 cut(s) 899
LmnI GCTCC 3 cut(s) 785, 889, 927
Lsp1109I GCAGC 2 cut(s) 541, 838
LweI GCATC 2 cut(s) 187, 217
MaeI CTAG 3 cut(s) 143, 170, 183
MaeII ACGT 3 cut(s) 136, 545, 607
MaeIII GTNAC 4 cut(s) 16, 376, 688, 748
MalI GATC 4 cut(s) 87, 216, 275, 552
MboI GATC 4 cut(s) 85, 214, 273, 550
MboII GAAGA 4 cut(s) 80, 739, 821, 886
MfeI CAATTG 1 cut(s) 987
MflI RGATCY 2 cut(s) 85, 214
MhlI GDGCHC 1 cut(s) 894
MlsI TGGCCA 1 cut(s) 795
MluCI AATT 3 cut(s) 35, 44, 987
MluNI TGGCCA 1 cut(s) 795
MmeI TCCRAC 3 cut(s) 130, 379, 423
MnlI CCTC 4 cut(s) 63, 73, 574, 703
Mox20I TGGCCA 1 cut(s) 795
Mph1103I ATGCAT 1 cut(s) 232
MroI TCCGGA 1 cut(s) 131
MscI TGGCCA 1 cut(s) 795
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 2 cut(s) 96, 248
Msp20I TGGCCA 1 cut(s) 795
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 707
MunI CAATTG 1 cut(s) 987
MvaI CCWGG 1 cut(s) 707
MwoI GCNNNNNNNGC 4 cut(s) 848, 908, 980, 989
NdeII GATC 4 cut(s) 85, 214, 273, 550
NlaIII CATG 9 cut(s) 35, 238, 343, 424, 481, 791, 842, 906, 982
NlaIV GGNNCC 1 cut(s) 923
NmuCI GTSAC 4 cut(s) 16, 376, 688, 748
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 2 cut(s) 842, 906
OliI CACNNNNGTG 1 cut(s) 248
PaeI GCATGC 1 cut(s) 906
PciSI GCTCTTC 1 cut(s) 899
PfeI GAWTC 1 cut(s) 642
PkrI GCNGC 3 cut(s) 29, 531, 853
PmaCI CACGTG 1 cut(s) 608
PmlI CACGTG 1 cut(s) 608
Ppu21I YACGTR 1 cut(s) 608
Psp124BI GAGCTC 1 cut(s) 894
Psp6I CCWGG 1 cut(s) 705
PspCI CACGTG 1 cut(s) 608
PspGI CCWGG 1 cut(s) 705
PspN4I GGNNCC 1 cut(s) 923
PspPI GGNCC 3 cut(s) 401, 602, 703
PsrI GAACNNNNNNTAC 2 cut(s) 722, 754
PsuI RGATCY 2 cut(s) 85, 214
RsaI GTAC 2 cut(s) 51, 950
RsaNI GTAC 2 cut(s) 50, 949
RseI CAYNNNNRTG 2 cut(s) 96, 248
SacI GAGCTC 1 cut(s) 894
SapI GCTCTTC 1 cut(s) 899
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 3 cut(s) 28, 530, 852
Sau3AI GATC 4 cut(s) 85, 214, 273, 550
Sau96I GGNCC 3 cut(s) 401, 602, 703
ScrFI CCNGG 1 cut(s) 707
SduI GDGCHC 1 cut(s) 894
SfaNI GCATC 2 cut(s) 187, 217
SinI GGWCC 2 cut(s) 401, 703
SmiMI CAYNNNNRTG 2 cut(s) 96, 248
SmlI CTYRAG 3 cut(s) 290, 620, 694
SmoI CTYRAG 3 cut(s) 290, 620, 694
SpeI ACTAGT 1 cut(s) 169
SphI GCATGC 1 cut(s) 906
Sse9I AATT 3 cut(s) 35, 44, 987
SsiI CCGC 2 cut(s) 27, 934
SspMI CTAG 3 cut(s) 143, 170, 183
SstI GAGCTC 1 cut(s) 894
StyD4I CCNGG 1 cut(s) 705
StyI CCWWGG 2 cut(s) 142, 218
TaaI ACNGT 3 cut(s) 109, 449, 1000
TaiI ACGT 3 cut(s) 139, 548, 610
TasI AATT 3 cut(s) 35, 44, 987
TatI WGTACW 1 cut(s) 948
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 1 cut(s) 642
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 4 cut(s) 16, 376, 688, 748
TseI GCWGC 2 cut(s) 529, 851
Tsp45I GTSAC 4 cut(s) 16, 376, 688, 748
TspDTI ATGAA 8 cut(s) 48, 57, 80, 251, 409, 441, 482, 944
TspRI CASTG 1 cut(s) 255
VpaK11BI GGWCC 2 cut(s) 401, 703
XapI RAATTY 2 cut(s) 35, 44
XbaI TCTAGA 1 cut(s) 182
XceI RCATGY 2 cut(s) 842, 906
XmaJI CCTAGG 1 cut(s) 142
XspI CTAG 3 cut(s) 143, 170, 183
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.