Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000245

Physical Location & Seq

Genomic Coordinates Forward (+)

59534885 .. 59546544

Gene Structure 11660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG410600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGGCTGTATGTTCACAGCTGTTATCTTTCTTGGGGTCCAAAATGCAACATCTGTGCAACCTATAGTTGCTATTGAAAGAACAGTCTTTTACAGAGAAAAAGCTGCAGGGATGTATTCAGCCTTGGCTTATGCATTTGCACAGGTGACAGGTTGTTGTTCAACTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006855 GO:0006869 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0010033 GO:0010035 GO:0010193 GO:0010876 GO:0014070 GO:0015399 GO:0015405 GO:0015692 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030001 GO:0031224 GO:0033036 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043207 GO:0043492 GO:0044425 GO:0044464 GO:0046677 GO:0046864 GO:0046865 GO:0046942 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071944 GO:0080168 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

56

Amino Acids

6.02

Weight (kDa)

8.59

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	1 - 50	3.9e-12	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66950 AT2G36380
fragaria_vesca	FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica	MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica	Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis	pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis	RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata	RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora	Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa	Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha	Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana	Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	77, 162
AluBI	AGCT	2 cut(s)	20, 104
AluI	AGCT	2 cut(s)	20, 104
ApeKI	GCWGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	91
BfmI	CTRYAG	2 cut(s)	63, 105
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	38
BspMAI	CTGCAG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	117
BstSFI	CTRYAG	2 cut(s)	63, 105
BstV1I	GCAGC	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	37
CviJI	RGCY	5 cut(s)	6, 20, 104, 122, 128
CviKI_1	RGCY	5 cut(s)	6, 20, 104, 122, 128
DdeI	CTNAG	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	123
FaiI	YATR	3 cut(s)	11, 65, 132
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	105
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	15
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	5 cut(s)	47, 58, 107, 134, 140
HpyF3I	CTNAG	1 cut(s)	165
LpnPI	CCDG	3 cut(s)	93, 128, 135
Lsp1109I	GCAGC	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	145
Mph1103I	ATGCAT	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	20
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	20
SatI	GCNGC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	37
SetI	ASST	5 cut(s)	22, 64, 106, 147, 154
SfcI	CTRYAG	2 cut(s)	63, 105
SgeI	CNNG	5 cut(s)	44, 120, 136, 155, 162
SinI	GGWCC	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	37
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.