Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000245

Physical Location & Seq

Genomic Coordinates Forward (+)

28334716 .. 28339182

Gene Structure 4467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG247300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAACCCAGTTTTCACCACAATACTCATCGGCGTACTTTTTGGTGTCATCTTCTGGAAGAAAGGAAACGTGTTAGGGAAACAACAAGATATTGTTAACCTTCTGGGAGCAACCTATTCTGCTGTTCTTTTCCTTGGAGCGGGAAATGCTTCTGCTGTGCAATCTGTGGTTGCGATTGAGAGAACAGTTTTCTACCGAGAAAGAGCAGCAGGAATGTATTCAGAGTTGCCTTATGCATTTGCTCAGAACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

84

Amino Acids

9.15

Weight (kDa)

9.22

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	3 - 82	9.3e-16	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66950 AT2G36380
fragaria_vesca	FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica	MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica	Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis	pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis	RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata	RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora	Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa	Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha	Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana	Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	140
AciI	CCGC	1 cut(s)	140
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflIII	ACRYGT	2 cut(s)	69, 249
ApeKI	GCWGC	1 cut(s)	206
Asp700I	GAANNNNTTC	2 cut(s)	148, 217
AsuHPI	GGTGA	1 cut(s)	7
BbvI	GCAGC	1 cut(s)	218
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	139
BspACI	CCGC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	1 cut(s)	250
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	1 cut(s)	253
FaiI	YATR	2 cut(s)	234, 251
FatI	CATG	1 cut(s)	249
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HpaI	GTTAAC	1 cut(s)	97
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	223, 246
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	160, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	253
KspAI	GTTAAC	1 cut(s)	97
LmnI	GCTCC	2 cut(s)	107, 137
LpnPI	CCDG	4 cut(s)	21, 40, 89, 195
Lsp1109I	GCAGC	1 cut(s)	218
MaeII	ACGT	1 cut(s)	69
MbiI	CCGCTC	1 cut(s)	140
MboII	GAAGA	2 cut(s)	43, 70
Mph1103I	ATGCAT	1 cut(s)	238
MroXI	GAANNNNTTC	2 cut(s)	148, 217
MseI	TTAA	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	146
NlaIII	CATG	1 cut(s)	253
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	1 cut(s)	253
PciI	ACATGT	1 cut(s)	249
PdmI	GAANNNNTTC	2 cut(s)	148, 217
PkrI	GCNGC	1 cut(s)	208
PscI	ACATGT	1 cut(s)	249
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	207
SetI	ASST	3 cut(s)	72, 102, 116
SgeI	CNNG	9 cut(s)	20, 67, 82, 98, 116, 146, 153, 209, 222
SsiI	CCGC	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	253
XmnI	GAANNNNTTC	2 cut(s)	148, 217
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.