Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000245

Physical Location & Seq

Genomic Coordinates Forward (+)

10925423 .. 10926020

Gene Structure 598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1119400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGACAATCTGCATCGTAGTATTATTTGGTGTCATATTCTGGGGCAAAGGAGACCAAATACATAAACAACAAGACCTAATCAATCTTTTGGGAGCTACCTATTCCGCCATTATCTTCCTTGGAGCTACCAATGCTTCCGTTGTGCAATATGTGGTTGCTGGAGCACGAACTGTTTTCTATCATGAAAGGGCAACTAGAATGTATCCAAAGTTGCCTTATGCATTTGTTCAGGTGGCTATTGAGACAATTTACGCTGCAATCCAAACCTTTGTCTATTCCTGCCTTCTATTTTTCATGATCGGGTACAATTTCAAGGTGGAGAAGATTTTGTACTTCTACTACTTCATCTTCTTGTGCTTCACTACTCTATATACGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

127

Amino Acids

14.57

Weight (kDa)

8.41

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	2 - 122	1.5e-19	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66950 AT2G36380
fragaria_vesca	FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica	MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica	Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis	pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis	RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata	RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora	Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa	Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha	Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana	Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	105
AfaI	GTAC	2 cut(s)	305, 332
AgsI	TTSAA	1 cut(s)	313
AluBI	AGCT	2 cut(s)	95, 125
AluI	AGCT	2 cut(s)	95, 125
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	2 cut(s)	45, 236
ApeKI	GCWGC	1 cut(s)	254
BarI	GAAGNNNNNNTAC	2 cut(s)	314, 346
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	241
BciVI	GTATCC	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	45, 236
BfaI	CTAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	213
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
BmsI	GCATC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	45, 236
Bso31I	GGTCTC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	297
BspACI	CCGC	1 cut(s)	105
BspHI	TCATGA	2 cut(s)	181, 294
BspTNI	GGTCTC	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	172
BstKTI	GATC	1 cut(s)	300
BstMAI	GTCTC	2 cut(s)	45, 236
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	241
BsuI	GTATCC	1 cut(s)	213
CciI	TCATGA	2 cut(s)	181, 294
Csp6I	GTAC	2 cut(s)	304, 331
CviAII	CATG	2 cut(s)	182, 295
CviJI	RGCY	3 cut(s)	95, 125, 236
CviKI_1	RGCY	3 cut(s)	95, 125, 236
CviQI	GTAC	2 cut(s)	304, 331
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	118
EcoT22I	ATGCAT	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	2 cut(s)	185, 298
FaiI	YATR	8 cut(s)	35, 63, 150, 183, 219, 296, 370, 372
FatI	CATG	2 cut(s)	181, 294
Fnu4HI	GCNGC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	180
Hin1II	CATG	2 cut(s)	185, 298
Hpy188III	TCNNGA	2 cut(s)	182, 295
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	12, 145, 221, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	185, 298
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	3 cut(s)	92, 122, 161
LpnPI	CCDG	4 cut(s)	25, 144, 215, 292
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	1 cut(s)	195
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	3 cut(s)	106, 334, 340
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	2 cut(s)	246, 307
Mph1103I	ATGCAT	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	2 cut(s)	185, 298
NsiI	ATGCAT	1 cut(s)	223
PagI	TCATGA	2 cut(s)	181, 294
PkrI	GCNGC	1 cut(s)	256
RsaI	GTAC	2 cut(s)	305, 332
RsaNI	GTAC	2 cut(s)	304, 331
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	7 cut(s)	78, 97, 101, 127, 234, 269, 318
SfaNI	GCATC	1 cut(s)	21
Sse9I	AATT	2 cut(s)	246, 307
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	172
TasI	AATT	2 cut(s)	246, 307
TatI	WGTACW	1 cut(s)	330
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	3 cut(s)	198, 283, 334
TspGWI	ACGGA	1 cut(s)	127
XspI	CTAG	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.