Rh6BG272200
ERF Family

Belongs to the ABC transporter superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000245
Physical Location & Seq
Reverse (-)
49094762 .. 49097749
2988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG272200.1

Sequence Viewer

Length: 585 bp
ATGGCGGTGAGTTGGGGTCTTGGGGAGAGCGGAGGCCGGAACTCAGGAAGACGAGCAGTCAGAGTAGATAGGAGGAAGGAGTGCAATGCCATCAGGTTTTTCACCACAATACTCATCGGCGTACTTTTTGGTGTAATCTTCTGGAAGAAAGGAAACGTGTTAGGGAAACAACAAGATATTGTTAACCTTCTGGGAGCAACCTATTCTGCTGTTCTTTTCCTTGGAGCGGGAAATGCTTCTGCTGTGCAATCTGTGGTTGCGATTGAGAGAACAGTTTTCTACCGAGAAAGAGCAGCAGGAATGTATTCAGAGTTGCCTTATGCATTTGCTCAGAATTCTTTGCCTTCGACAAAAAGTGATGGTTGTAGTTGGGCACCCATTTTTGTTCGGCAATCAAACTTCAGACTTCCCGTTGATACTAAAGTACCCATTACCATGATTGGTCCTGGAACTGGATTTGCTCCTTTCAGGGATTTCTTGCAGGACTACAATTATGAAGATGAGCTGAACAACTTAGTAGAAAAAGCAATGCAGTTTGATTTCTGGGGTTTTGGCCTTCATGAAGTCAAAGCAATGCTAATGTGA

Protein Analysis

194

Amino Acids

21.6

Weight (kDa)

9.17

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 24 - 111 1.6e-16 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 373
AccBSI CCGCTC 2 cut(s) 30, 227
AciI CCGC 3 cut(s) 5, 30, 227
AcsI RAATTY 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 385
AfaI GTAC 2 cut(s) 123, 426
AfiI CCNNNNNNNGG 2 cut(s) 226, 452
AflIII ACRYGT 1 cut(s) 156
AhdI GACNNNNNGTC 1 cut(s) 56
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 1 cut(s) 505
AluI AGCT 1 cut(s) 505
AoxI GGCC 2 cut(s) 34, 553
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 334
Asp700I GAANNNNTTC 2 cut(s) 235, 304
AspS9I GGNCC 1 cut(s) 443
AsuHPI GGTGA 2 cut(s) 19, 94
AvaII GGWCC 1 cut(s) 443
BaeGI GKGCMC 1 cut(s) 376
BaeI ACNNNNGTAYC 4 cut(s) 408, 408, 441, 441
BanI GGYRCC 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 305
BccI CCATC 2 cut(s) 98, 353
BciT130I CCWGG 1 cut(s) 447
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 447
Bme18I GGWCC 1 cut(s) 443
BmeRI GACNNNNNGTC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 447
BpiI GAAGAC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 452
Bse1I ACTGG 1 cut(s) 457
Bse3DI GCAATG 3 cut(s) 91, 534, 579
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 220
BseLI CCNNNNNNNGG 2 cut(s) 226, 452
BseMI GCAATG 3 cut(s) 91, 534, 579
BseMII CTCAG 2 cut(s) 57, 344
BseNI ACTGG 1 cut(s) 457
BseSI GKGCMC 1 cut(s) 376
BseXI GCAGC 1 cut(s) 305
BshFI GGCC 2 cut(s) 36, 555
BshNI GGYRCC 1 cut(s) 373
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 226, 452
BsnI GGCC 2 cut(s) 36, 555
Bsp1286I GDGCHC 1 cut(s) 376
BspACI CCGC 3 cut(s) 5, 30, 227
BspANI GGCC 2 cut(s) 36, 555
BspCNI CTCAG 2 cut(s) 56, 343
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 373
BsrBI CCGCTC 2 cut(s) 30, 227
BsrDI GCAATG 3 cut(s) 91, 534, 579
BsrI ACTGG 1 cut(s) 457
BssECI CCNNGG 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 274
BstDEI CTNAG 3 cut(s) 43, 330, 514
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 445
BstSLI GKGCMC 1 cut(s) 376
BstV1I GCAGC 1 cut(s) 305
BstV2I GAAGAC 1 cut(s) 55
BsuRI GGCC 2 cut(s) 36, 555
CciI TCATGA 1 cut(s) 559
Cfr13I GGNCC 1 cut(s) 443
Csp6I GTAC 2 cut(s) 122, 425
CviAII CATG 2 cut(s) 436, 560
CviJI RGCY 3 cut(s) 36, 505, 555
CviKI_1 RGCY 3 cut(s) 36, 505, 555
CviQI GTAC 2 cut(s) 122, 425
DdeI CTNAG 3 cut(s) 43, 330, 514
DriI GACNNNNNGTC 1 cut(s) 56
Eam1105I GACNNNNNGTC 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 443
Eco57I CTGAAG 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 2 cut(s) 439, 563
FaiI YATR 4 cut(s) 321, 437, 495, 561
FatI CATG 2 cut(s) 435, 559
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 294
HaeIII GGCC 2 cut(s) 36, 555
HapII CCGG 1 cut(s) 37
Hin1II CATG 2 cut(s) 439, 563
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HpaI GTTAAC 1 cut(s) 184
HpaII CCGG 1 cut(s) 37
HphI GGTGA 2 cut(s) 19, 94
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 4 cut(s) 62, 310, 333, 404
Hpy188III TCNNGA 3 cut(s) 45, 142, 560
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 4 cut(s) 70, 197, 354, 566
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 5 cut(s) 84, 247, 323, 481, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 3 cut(s) 43, 330, 514
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 2 cut(s) 439, 563
KspAI GTTAAC 1 cut(s) 184
LmnI GCTCC 3 cut(s) 194, 224, 466
Lsp1109I GCAGC 1 cut(s) 305
MaeII ACGT 1 cut(s) 156
MbiI CCGCTC 2 cut(s) 30, 227
MboII GAAGA 4 cut(s) 60, 130, 157, 509
MhlI GDGCHC 1 cut(s) 376
MluCI AATT 2 cut(s) 334, 490
MnlI CCTC 2 cut(s) 26, 66
Mph1103I ATGCAT 1 cut(s) 325
MroXI GAANNNNTTC 2 cut(s) 235, 304
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 434
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 1 cut(s) 233
NlaIII CATG 2 cut(s) 439, 563
NlaIV GGNNCC 1 cut(s) 375
NsiI ATGCAT 1 cut(s) 325
PagI TCATGA 1 cut(s) 559
PdmI GAANNNNTTC 2 cut(s) 235, 304
PfoI TCCNGGA 1 cut(s) 445
PkrI GCNGC 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 1 cut(s) 443
RsaI GTAC 2 cut(s) 123, 426
RsaNI GTAC 2 cut(s) 122, 425
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 294
Sau96I GGNCC 1 cut(s) 443
ScrFI CCNGG 1 cut(s) 447
SduI GDGCHC 1 cut(s) 376
SetI ASST 5 cut(s) 98, 159, 189, 203, 507
SinI GGWCC 1 cut(s) 443
SmiMI CAYNNNNRTG 1 cut(s) 434
Sse9I AATT 2 cut(s) 334, 490
SsiI CCGC 3 cut(s) 5, 30, 227
StyD4I CCNGG 1 cut(s) 445
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 347
TasI AATT 2 cut(s) 334, 490
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 3 cut(s) 510, 548, 576
VpaK11BI GGWCC 1 cut(s) 443
XapI RAATTY 1 cut(s) 334
XmnI GAANNNNTTC 2 cut(s) 235, 304
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.