Rroxscaffold_1G00025440

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
31940247 .. 31949617
9371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025440.1

Sequence Viewer

Length: 4341 bp
ATGGCGGCTGCAGCATTGGCCGGAGAAGGCTTGGTGCGGTCTGGAAGTAGCATGAATTGGCGGCCAACAAGCATGAAAGACATGTGGAATGATCAGCCAGATGCATTCCAGAGGAGTGAGAGGAAGCGGGAGGAGGAGGAGGAGCTGAGGTGGGCTGCAATAGAGCGGCTGCCCACTTATGACAGGTTGAAGAAGGGGATGTTGAGGCAGGTCATGAGCGATGGAAGGATAAAGCATGATGAGGTTGATGTTACAAAGTTTAGGGCAGATGACAAGAAGAAGTTGATGGATATCATACTAAAGGTTGTTGACGATGATAATGAGAAACTTCTCAGGAAGCTCAGGGACAGGACTGACAGGGTTGGAATCGAGGTTCCAAAGATTGAAGTGAGATTCCAGGATTTATCAGTCGAGGGAGATGCATATGTTGGGACTAGAGCACTTCCAACTCTGTACAATTCCACCTTAAATGCAATAGAGGGAGTTCTTGGACTTTGTGGGCTCTCTCCATCGAAGAAAAGAGTAGTGAAGATACTTCAAGATGTGAGTGGAATAGTGAGACCAGCAAGAATGACTCTACTTCTCGGACCTCCTGGCTCAGGAAAAACAACATTTCTAAAGGCACTTTCTGGAAAACTTGATGATGATTTAAGGGTAACAGGAAAAGTTACCTATTGTGGTCACGAGTTCTCCGAATTTGTTCCTCAGAGAACTAGTGCATATATTAGCCAGCATGATCTTCACTATGGTGAGATGACCGTACGCGAGACTCTTGATTTCTCTGGACGGTGCCTGGGAGTTGGAAGCAGGTATGAAATGCTGGCAGAAGCATCAAGGCGTGAGAAACAAGAAGGCATACAACCGGATCCTGAGATTGATGCATTCATGAAAGCCACAGCAGTGGCTGGCCAGAAAAGTAGTTTGATGACAGATTATGTTCTTAAGATACTTGGATTGGATATTTGCGCTGATACTATGGTGGGTGATGACATGAGGCGGGGCATCTCTGGAGGGCAGAAGAAGCGTGTAACTACTGGGGAAATGTTAGTTGGGCCAGCAAGAGCCCTTTTCATGGATGAAATATCAACAGGATTGGATAGTTCCACCACATTTCAAATTGTCAAGTACATGAGGCAGATGGCTCATATTATGGACATGACAATGATCATTTCTCTCCTTCAGCCTGCACCAGAGACATTTGACCTCTTTGATGACATTATCCTACTCTCAGAGGGTCAAATTGTCTATCAAGGTTCCCGTGACAATGTTCTTGATTTTTTTGAACATATGGGCTTCAAATGCCCGAAAAGGAAAGGTGTTGCAGACTTTTTGCAAGAAGTAACTTCCAAGAAGGATCAAGAACAATACTGGTTTAAAAGGAATCAACCTTACAAGTATATCTCCGTACCCGAGTTTGCTCAAACCTTCAACTCCTTTTATATTAGTCAAAGGCTTTCTGAAGAGCTAAGGGTCCCTTATGATAAGTCTAGTACCCATCCAGGTGCTTTGGTGAGAGAAAAGTATGGAATATCTAATTGGGAACTCTTCAAGGCATGCTTCTCAAGGGAATGGCTACTGATGAAGCGCAATTCATTTGTATACATATTCAAGACCACCCAGATAACAATCATGGCTGTAATCGCATTGACTGTGTTCTTAAGAACGGAAATGAAAGCTGGTCAAATACAAGATGCAGCAAAATTTTGGGGTGCATTGTTTTTCAGTCTCATCAATGTCATGTTTAATGGAATGGCAGAGCTTGCCATGACAGTTTTCAGGCTTCCTGTGTTCTATAAACAGAGAGATGCCTTGTTCTATCCCGGGTGGGCTTTCGGGTTGCCCCTTTGGATCCTCAGAATTCCCATTTCAGTAATGGAGTCAGGCATTTGGATCATTCTTACTTATTACTCCATTGGTTTTGCACCTGCTGCAAGTAGGTTTTTCAAACAATTCTTGGCTTTCTTTGGAGTGCATCAGATGGCTCTCTCCCTCTTCCGTTTCATTGCAGCTGTTGGAAGAACAGAAGTTGTTGCACAAACAATTGGAACCTTTACCTTGCTACTGGTCTTTGTGCTTGGAGGTGACATTAAACCATGGATGATCTGGGGCTACTATATTTCTCCTATGATGTATGGGCAAAATGCCATTGCCATTAATGAGTTTCTCGACAAAAGATGGAGCAGCCCCATAACTGGTTCTAGCCAACCTACAGTTGGAAAGACCCTCCTTAAGGAAAGAGGACTGTTTGTAGACGAATATTGGTATTGGATTTGCATTGGAGCACTCCTTGGATATTCTCTTCTCTTTAACGTTCTTTTCATTGCAGCACTAACATTTTTGAAGCCACTTGGTGATTCTAAAGCGGTAATTTCGGAAGATCACTCTGATCTCAATACTAAAAAGCACTTGACATCCAATTCAGAAGGCACTGATACTCCGGTGAGGAATACCAGAGAGACTACAAGCTCAAGCATGAGTTCTTCAAATACTGAATCTCAAAGAGGAATGGTGTTGCCCTTCCAGCCCCTTTCACTTGCTTTTGACCATGTTAACTACTATGTGGATATGCCTGCTGAAATGAAGAGTCAAGGGATTCAAGAGAGCAGATTACAACTGCTACGAGATGTCAGTGGTGCTTTCAGACCAGGTGTCTTAACAGCTTTAGTAGGAGTCAGTGGTGCTGGAAAGACAACCTTGATGGATGTTTTATCAGGAAGGAAGACTGGTGGGTACATTGAGGGTAGTATAAGCATTTCTGGCTACCCAAAAAACCAAGCTACATTTGCTCGAGTTAGCGGTTATTGTGAACAAAATGACATCCATTCTCCTTATGTGACTGTCTATGAATCCCTTGTGTATTCTGCATGGTTGCGTCTTGCTTCAGATGTAAAGAAGGAAACACGAAAGATGTTTGTTGAAGAAGTCATGGAACTAGTTGAGCTTAACCCACTGAGGAATGCTTTAGTCGGACTTCCAGGAGTAGATGGTCTTTCAACTGAACAGCGGAAGAGGCTCACAATAGCTGTAGAGTTGGTAGCCAATCCCTCCATAATCTGTATGGATGAACCTACATCAGGCCTTGATGCTAGAGCTGCTGCAATTGTTATGCGTGCTGTAAGGAACACAGTAGATACTGGCCGAACTGTTGTGTGCACAATCCACCAACCAAGCATAGATATCTTTGAAGCTTTTGATGAACTACTTTTGATGAAAAGAGGAGGAAAAGTTATTTATGCTGGACCCCTAGGTTCTCATTCTCACAAACTTGTTGAGTATTTTGAGAGTATTCCAGGGGTTCAAAAAATAAAAGACGGGTACAATCCTGCCACATGGATGTTAGAAGTCAGCTCCACTGCAGTTGAGACTCAACTCCACATTGATTTTGCAGAAGTTTACGCCAATTCAGACCTCTATAGGAGAAATCAGGACCTCATCAGGCAGCTAAGCACTCCACAACCAGGTTCCAAGGATCTCTACTTCCCAACCCGCTACTCACAAAGTTTCTTAATTCAGTGCAAGGCTTGCTTCTGGAAACAACACTGGTCTTACTGGAGGAATTCGCACTACAATGCAATCCGGTTTTTCATGACAATTGTTATTGGTATCTTATTTGGTGTAATCTTTTGGGGAAAAGGAGACAAGATACACAAACAACAAGACTTGATTAACCTGTTGGGAGCAACTTATGCCGCTGTTCTTTTCCTCGGAGCCTCCAATGCTTCTGCAGTGCAATCTGTAGTGGCAACTGAGAGAACAGTATTCTATCGTGAACGGGCAGCAGGAATGTATTCCGAGTTGCCTTATGCCTTTGCTCAGGTGGCTATAGAAACAATTTATGTTGCAATACAGACCTTCATCTATACTCTTCTGCTATATTCCATGATTGGATACCAGTGGAAGGTGGTCAAGTTCCTGTATTTCTATTACTTCATATTCATGTGCTTCACGTACTTTTCAATGTACGGTATGATGGTGGTTGCGCTAACTCCTGGCCACCAGATTGCTGCCATTGTTATGTCCTTCTTCCTGAGCTTTTGGAACTTGTTTTCTGGTTTCCTCATCCCTAGACCGCTAATCCCAATATGGTGGAGGTGGTACTACTGGTGTTCCCCAGTTGCTTGGACAATCTATGGCATTTTCACATCTCAAGTTGGTGATTATAAGAGTTTACTCGAAATTCCGGGTGCAGCACCAAAGGCAGTTGATGCATTCCTTAAGGAGTATTTAGGCTATGACTATGACTTTCTTGTACCAGTAGTCCTTGCTCATGTTGCTTGGGTACTCCTCTTCTTCTTTGTATTTGCCTATGGTATCAAGTTCCTCAACTTCCAAAGGAGATGA

Protein Analysis

1446

Amino Acids

164.05

Weight (kDa)

8.58

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 105 - 153 1.3e-09 ABC-transporter N-terminal
ABC_tran PF00005 179 - 360 4e-15 ABC transporter
ABC2_membrane PF01061 515 - 721 1.2e-40 ABC-2 type transporter
PDR_assoc PF08370 726 - 790 8.1e-28 Plant PDR ABC transporter associated
ABC_tran PF00005 873 - 1025 3e-20 ABC transporter
ABC2_membrane PF01061 1171 - 1381 9.7e-56 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4161
AarI CACCTGC 1 cut(s) 1933
Acc36I ACCTGC 3 cut(s) 199, 798, 1933
AccB1I GGYRCC 1 cut(s) 789
AccBSI CCGCTC 1 cut(s) 166
AccI GTMKAC 2 cut(s) 1599, 2250
AccII CGCG 1 cut(s) 765
AclI AACGTT 1 cut(s) 2310
AclWI GGATC 7 cut(s) 860, 873, 1362, 1843, 1856, 1898, 3477
AcoI YGGCCR 5 cut(s) 18, 62, 907, 3136, 3991
AcsI RAATTY 5 cut(s) 695, 1700, 1857, 3556, 4176
AcuI CTGAAG 3 cut(s) 1163, 1479, 2865
AdeI CACNNNGTG 1 cut(s) 2351
AfiI CCNNNNNNNGG 8 cut(s) 599, 1072, 2192, 2213, 2230, 3074, 3458, 3898
AflII CTTAAG 4 cut(s) 941, 1657, 2228, 4214
AflIII ACRYGT 1 cut(s) 81
AhdI GACNNNNNGTC 1 cut(s) 2648
AhlI ACTAGT 2 cut(s) 713, 2932
AjnI CCWGG 9 cut(s) 396, 592, 792, 1498, 2644, 2974, 3289, 3457, 3988
AjuI GAANNNNNNNTTGG 4 cut(s) 1032, 1064, 1519, 1551
AleI CACNNNNGTG 2 cut(s) 747, 899
AloI GAACNNNNNNTCC 2 cut(s) 357, 389
Alw21I GWGCWC 3 cut(s) 442, 2284, 3155
Alw26I GTCTC 7 cut(s) 553, 761, 1187, 1730, 2450, 3356, 3630
Alw44I GTGCAC 1 cut(s) 3151
AlwI GGATC 7 cut(s) 860, 873, 1362, 1843, 1856, 1898, 3477
AlwNI CAGNNNCTG 1 cut(s) 905
Ama87I CYCGRG 3 cut(s) 1409, 1820, 2787
AoxI GGCC 7 cut(s) 18, 62, 907, 1052, 3076, 3136, 3991
ApaLI GTGCAC 1 cut(s) 3151
ApoI RAATTY 5 cut(s) 695, 1700, 1857, 3556, 4176
AseI ATTAAT 1 cut(s) 2154
Asp700I GAANNNNTTC 2 cut(s) 699, 3787
AspA2I CCTAGG 1 cut(s) 3244
AspLEI GCGC 3 cut(s) 968, 1587, 3982
AspS9I GGNCC 5 cut(s) 587, 1052, 1471, 3239, 3427
AsuC2I CCSGG 3 cut(s) 1821, 1822, 4182
AsuHPI GGTGA 7 cut(s) 761, 995, 1522, 2093, 2363, 2452, 4166
AvaI CYCGRG 3 cut(s) 1409, 1820, 2787
AvaII GGWCC 4 cut(s) 587, 1471, 3239, 3427
AvrII CCTAGG 1 cut(s) 3244
BaeGI GKGCMC 1 cut(s) 3155
BaeI ACNNNNGTAYC 4 cut(s) 963, 996, 2424, 2457
BalI TGGCCA 2 cut(s) 909, 3993
BamHI GGATCC 2 cut(s) 865, 1848
BanI GGYRCC 1 cut(s) 789
BanII GRGCYC 2 cut(s) 504, 1066
BauI CACGAG 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 2726
Bbv12I GWGCWC 3 cut(s) 442, 2284, 3155
BbvCI CCTCAGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 9 cut(s) 398, 594, 794, 1500, 2646, 2976, 3291, 3459, 3990
BciVI GTATCC 1 cut(s) 3881
BclI TGATCA 2 cut(s) 91, 1164
BcnI CCSGG 3 cut(s) 1821, 1822, 4182
BcoDI GTCTC 7 cut(s) 553, 761, 1187, 1730, 2450, 3356, 3630
BcuI ACTAGT 2 cut(s) 713, 2932
BfaI CTAG 8 cut(s) 435, 714, 1488, 2199, 2933, 3087, 3245, 4065
BfmI CTRYAG 8 cut(s) 9, 2208, 3024, 3354, 3412, 3723, 3735, 3822
BfrI CTTAAG 4 cut(s) 941, 1657, 2228, 4214
BfuAI ACCTGC 3 cut(s) 199, 798, 1933
BfuI GTATCC 1 cut(s) 3881
BlnI CCTAGG 1 cut(s) 3244
BlpI GCTNAGC 1 cut(s) 3443
Bme18I GGWCC 4 cut(s) 587, 1471, 3239, 3427
BmeRI GACNNNNNGTC 1 cut(s) 2648
BmeT110I CYCGRG 3 cut(s) 1409, 1820, 2787
BmgT120I GGNCC 5 cut(s) 587, 1052, 1471, 3239, 3427
BmrI ACTGGG 2 cut(s) 1044, 4106
BmuI ACTGGG 2 cut(s) 1044, 4106
BpiI GAAGAC 1 cut(s) 2726
BpmI CTGGAG 2 cut(s) 1029, 3571
Bpu10I CCTNAGC 6 cut(s) 146, 341, 598, 1466, 3813, 4028
Bpu1102I GCTNAGC 1 cut(s) 3443
BpuEI CTTGAG 3 cut(s) 1546, 2452, 4131
BpuMI CCSGG 3 cut(s) 1821, 1822, 4182
BsaAI YACGTR 1 cut(s) 3948
BsaBI GATNNNNATC 2 cut(s) 290, 1625
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 8 cut(s) 793, 1820, 2093, 2287, 3244, 3290, 3465, 3703
BsaWI WCCGGW 3 cut(s) 862, 2437, 3576
BsaXI ACNNNNNCTCC 8 cut(s) 134, 164, 674, 704, 2419, 2449, 3210, 3240
Bsc4I CCNNNNNNNGG 8 cut(s) 599, 1072, 2192, 2213, 2230, 3074, 3458, 3898
Bse3DI GCAATG 3 cut(s) 2001, 2145, 2319
Bse8I GATNNNNATC 2 cut(s) 290, 1625
BseBI CCWGG 9 cut(s) 398, 594, 794, 1500, 2646, 2976, 3291, 3459, 3990
BseDI CCNNGG 8 cut(s) 793, 1820, 2093, 2287, 3244, 3290, 3465, 3703
BseJI GATNNNNATC 2 cut(s) 290, 1625
BseLI CCNNNNNNNGG 8 cut(s) 599, 1072, 2192, 2213, 2230, 3074, 3458, 3898
BseMI GCAATG 3 cut(s) 2001, 2145, 2319
BseRI GAGGAG 7 cut(s) 127, 146, 149, 152, 155, 3231, 4274
BseSI GKGCMC 1 cut(s) 3155
BsgI GTGCAG 2 cut(s) 1170, 4206
Bsh1236I CGCG 1 cut(s) 765
BshFI GGCC 7 cut(s) 20, 64, 909, 1054, 3078, 3138, 3993
BshNI GGYRCC 1 cut(s) 789
BsiHKAI GWGCWC 3 cut(s) 442, 2284, 3155
BsiHKCI CYCGRG 3 cut(s) 1409, 1820, 2787
BsiSI CCGG 6 cut(s) 21, 863, 1821, 2438, 3577, 4181
BsiWI CGTACG 1 cut(s) 760
BslFI GGGAC 3 cut(s) 359, 445, 1457
BslI CCNNNNNNNGG 8 cut(s) 599, 1072, 2192, 2213, 2230, 3074, 3458, 3898
BsmAI GTCTC 7 cut(s) 553, 761, 1187, 1730, 2450, 3356, 3630
BsmFI GGGAC 3 cut(s) 359, 445, 1457
BsmI GAATGC 4 cut(s) 104, 881, 2962, 4208
BsnI GGCC 7 cut(s) 20, 64, 909, 1054, 3078, 3138, 3993
Bso31I GGTCTC 1 cut(s) 553
BsoBI CYCGRG 3 cut(s) 1409, 1820, 2787
Bsp1286I GDGCHC 5 cut(s) 442, 504, 1066, 2284, 3155
Bsp1407I TGTACA 1 cut(s) 453
Bsp1720I GCTNAGC 1 cut(s) 3443
Bsp19I CCATGG 1 cut(s) 2093
BspANI GGCC 7 cut(s) 20, 64, 909, 1054, 3078, 3138, 3993
BspFNI CGCG 1 cut(s) 765
BspHI TCATGA 3 cut(s) 213, 885, 3585
BspMAI CTGCAG 3 cut(s) 13, 3358, 3727
BspMI ACCTGC 3 cut(s) 199, 798, 1933
BspPI GGATC 7 cut(s) 860, 873, 1362, 1843, 1856, 1898, 3477
BspQI GCTCTTC 1 cut(s) 1455
BspT107I GGYRCC 1 cut(s) 789
BspTI CTTAAG 4 cut(s) 941, 1657, 2228, 4214
BspTNI GGTCTC 1 cut(s) 553
BsrBI CCGCTC 1 cut(s) 166
BsrDI GCAATG 3 cut(s) 2001, 2145, 2319
BsrGI TGTACA 1 cut(s) 453
BssECI CCNNGG 8 cut(s) 793, 1820, 2093, 2287, 3244, 3290, 3465, 3703
BssNAI GTATAC 1 cut(s) 1600
BssSI CACGAG 1 cut(s) 683
BssT1I CCWWGG 4 cut(s) 2093, 2287, 3244, 3465
Bst1107I GTATAC 1 cut(s) 1600
Bst2BI CACGAG 1 cut(s) 683
Bst2UI CCWGG 9 cut(s) 398, 594, 794, 1500, 2646, 2976, 3291, 3459, 3990
Bst6I CTCTTC 8 cut(s) 1455, 1550, 1997, 2304, 2576, 3002, 3870, 4292
BstAFI CTTAAG 4 cut(s) 941, 1657, 2228, 4214
BstAPI GCANNNNNTGC 5 cut(s) 1760, 1928, 3522, 3686, 4205
BstAUI TGTACA 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 3948
BstDSI CCRYGG 1 cut(s) 2093
BstENI CCTNNNNNAGG 3 cut(s) 597, 2228, 3072
BstFNI CGCG 1 cut(s) 765
BstHHI GCGC 3 cut(s) 968, 1587, 3982
BstMAI GTCTC 7 cut(s) 553, 761, 1187, 1730, 2450, 3356, 3630
BstNI CCWGG 9 cut(s) 398, 594, 794, 1500, 2646, 2976, 3291, 3459, 3990
BstNSI RCATGY 2 cut(s) 85, 1557
BstSFI CTRYAG 8 cut(s) 9, 2208, 3024, 3354, 3412, 3723, 3735, 3822
BstSLI GKGCMC 1 cut(s) 3155
BstUI CGCG 1 cut(s) 765
BstV2I GAAGAC 1 cut(s) 2726
BstX2I RGATCY 3 cut(s) 865, 1848, 3469
BstXI CCANNNNNNTGG 3 cut(s) 901, 4086, 4119
BstYI RGATCY 3 cut(s) 865, 1848, 3469
BstZ17I GTATAC 1 cut(s) 1600
BsuI GTATCC 1 cut(s) 3881
BsuRI GGCC 7 cut(s) 20, 64, 909, 1054, 3078, 3138, 3993
BtgI CCRYGG 1 cut(s) 2093
BtgZI GCGATG 1 cut(s) 234
BtsI GCAGTG 3 cut(s) 906, 3351, 3732
BveI ACCTGC 3 cut(s) 199, 798, 1933
CaiI CAGNNNCTG 1 cut(s) 905
CciI TCATGA 3 cut(s) 213, 885, 3585
CfoI GCGC 3 cut(s) 968, 1587, 3982
Cfr13I GGNCC 5 cut(s) 587, 1052, 1471, 3239, 3427
Cfr9I CCCGGG 1 cut(s) 1820
CseI GACGC 1 cut(s) 2861
CsiI ACCWGGT 2 cut(s) 2644, 3457
CspCI CAANNNNNGTGG 2 cut(s) 3340, 3375
DraI TTTAAA 1 cut(s) 1375
DraIII CACNNNGTG 1 cut(s) 2351
DriI GACNNNNNGTC 1 cut(s) 2648
EaeI YGGCCR 5 cut(s) 18, 62, 907, 3136, 3991
Eam1104I CTCTTC 8 cut(s) 1455, 1550, 1997, 2304, 2576, 3002, 3870, 4292
Eam1105I GACNNNNNGTC 1 cut(s) 2648
EarI CTCTTC 8 cut(s) 1455, 1550, 1997, 2304, 2576, 3002, 3870, 4292
Eco130I CCWWGG 4 cut(s) 2093, 2287, 3244, 3465
Eco147I AGGCCT 1 cut(s) 3078
Eco24I GRGCYC 2 cut(s) 504, 1066
Eco31I GGTCTC 1 cut(s) 553
Eco32I GATATC 2 cut(s) 292, 3178
Eco47I GGWCC 4 cut(s) 587, 1471, 3239, 3427
Eco57I CTGAAG 3 cut(s) 1163, 1479, 2865
Eco88I CYCGRG 3 cut(s) 1409, 1820, 2787
EcoNI CCTNNNNNAGG 3 cut(s) 597, 2228, 3072
EcoO109I RGGNCCY 2 cut(s) 1471, 3427
EcoRI GAATTC 2 cut(s) 1857, 3556
EcoRII CCWGG 9 cut(s) 396, 592, 792, 1498, 2644, 2974, 3289, 3457, 3988
EcoRV GATATC 2 cut(s) 292, 3178
EcoT14I CCWWGG 4 cut(s) 2093, 2287, 3244, 3465
EcoT22I ATGCAT 4 cut(s) 106, 424, 883, 4210
EcoT38I GRGCYC 2 cut(s) 504, 1066
ErhI CCWWGG 4 cut(s) 2093, 2287, 3244, 3465
FalI AAGNNNNNCTT 8 cut(s) 1459, 1491, 1541, 1573, 2678, 2710, 3509, 3541
FaqI GGGAC 3 cut(s) 359, 445, 1457
FauI CCCGC 3 cut(s) 120, 990, 3494
FauNDI CATATG 2 cut(s) 424, 1287
FbaI TGATCA 2 cut(s) 91, 1164
FblI GTMKAC 2 cut(s) 1599, 2250
FriOI GRGCYC 2 cut(s) 504, 1066
FspBI CTAG 8 cut(s) 435, 714, 1488, 2199, 2933, 3087, 3245, 4065
GlaI GCGC 3 cut(s) 967, 1586, 3981
GsuI CTGGAG 2 cut(s) 1029, 3571
HaeIII GGCC 7 cut(s) 20, 64, 909, 1054, 3078, 3138, 3993
HapII CCGG 6 cut(s) 21, 863, 1821, 2438, 3577, 4181
HgaI GACGC 1 cut(s) 2861
HhaI GCGC 3 cut(s) 968, 1587, 3982
Hin6I GCGC 3 cut(s) 966, 1585, 3980
HinP1I GCGC 3 cut(s) 966, 1585, 3980
HincII GTYRAC 2 cut(s) 310, 2551
HindII GTYRAC 2 cut(s) 310, 2551
HindIII AAGCTT 1 cut(s) 3186
HpaI GTTAAC 1 cut(s) 2551
HpaII CCGG 6 cut(s) 21, 863, 1821, 2438, 3577, 4181
HphI GGTGA 7 cut(s) 761, 995, 1522, 2093, 2363, 2452, 4166
Hpy166II GTNNAC 9 cut(s) 310, 1600, 2251, 2551, 2807, 3153, 3394, 3770, 4169
Hpy8I GTNNAC 9 cut(s) 310, 1600, 2251, 2551, 2807, 3153, 3394, 3770, 4169
HpyCH4IV ACGT 2 cut(s) 2310, 3947
HpySE526I ACGT 2 cut(s) 2310, 3947
HspAI GCGC 3 cut(s) 966, 1585, 3980
KflI GGGWCCC 1 cut(s) 1471
Ksp22I TGATCA 2 cut(s) 91, 1164
KspAI GTTAAC 1 cut(s) 2551
LguI GCTCTTC 1 cut(s) 1455
LmnI GCTCC 6 cut(s) 142, 2178, 2279, 3353, 3677, 3707
MabI ACCWGGT 2 cut(s) 2644, 3457
MaeI CTAG 8 cut(s) 435, 714, 1488, 2199, 2933, 3087, 3245, 4065
MaeII ACGT 2 cut(s) 2310, 3947
MaeIII GTNAC 9 cut(s) 250, 655, 667, 680, 1027, 1259, 1339, 2081, 2833
MbiI CCGCTC 1 cut(s) 166
MfeI CAATTG 3 cut(s) 2040, 3099, 3591
MflI RGATCY 3 cut(s) 865, 1848, 3469
MhlI GDGCHC 5 cut(s) 442, 504, 1066, 2284, 3155
MlsI TGGCCA 2 cut(s) 909, 3993
MluNI TGGCCA 2 cut(s) 909, 3993
MlyI GAGTC 6 cut(s) 568, 763, 1886, 2593, 2679, 3358
MmeI TCCRAC 6 cut(s) 343, 470, 781, 1993, 2194, 2947
Mox20I TGGCCA 2 cut(s) 909, 3993
Mph1103I ATGCAT 4 cut(s) 106, 424, 883, 4210
MroXI GAANNNNTTC 2 cut(s) 699, 3787
MscI TGGCCA 2 cut(s) 909, 3993
MslI CAYNNNNRTG 8 cut(s) 747, 899, 1160, 1500, 3332, 3567, 3935, 4013
Msp20I TGGCCA 2 cut(s) 909, 3993
MspA1I CMGCKG 3 cut(s) 2009, 3004, 3692
MspCI CTTAAG 4 cut(s) 941, 1657, 2228, 4214
MspI CCGG 6 cut(s) 21, 863, 1821, 2438, 3577, 4181
MunI CAATTG 3 cut(s) 2040, 3099, 3591
Mva1269I GAATGC 4 cut(s) 104, 881, 2962, 4208
MvaI CCWGG 9 cut(s) 398, 594, 794, 1500, 2646, 2976, 3291, 3459, 3990
MvnI CGCG 1 cut(s) 765
NciI CCSGG 3 cut(s) 1821, 1822, 4182
NcoI CCATGG 1 cut(s) 2093
NdeI CATATG 2 cut(s) 424, 1287
NmuCI GTSAC 4 cut(s) 680, 1259, 2081, 2833
NsiI ATGCAT 4 cut(s) 106, 424, 883, 4210
NspI RCATGY 2 cut(s) 85, 1557
OliI CACNNNNGTG 2 cut(s) 747, 899
PaeI GCATGC 1 cut(s) 1557
PaeR7I CTCGAG 1 cut(s) 2787
PagI TCATGA 3 cut(s) 213, 885, 3585
PaqCI CACCTGC 1 cut(s) 1933
PceI AGGCCT 1 cut(s) 3078
PciI ACATGT 1 cut(s) 81
PciSI GCTCTTC 1 cut(s) 1455
PcsI WCGNNNNNNNCGW 1 cut(s) 690
PctI GAATGC 4 cut(s) 104, 881, 2962, 4208
PdmI GAANNNNTTC 2 cut(s) 699, 3787
PfeI GAWTC 7 cut(s) 366, 393, 1381, 2354, 2492, 2593, 2846
Pfl23II CGTACG 1 cut(s) 760
PfoI TCCNGGA 2 cut(s) 396, 2974
PleI GAGTC 6 cut(s) 568, 763, 1885, 2592, 2678, 3358
PpsI GAGTC 6 cut(s) 568, 763, 1885, 2592, 2678, 3358
Ppu21I YACGTR 1 cut(s) 3948
PpuMI RGGWCCY 2 cut(s) 1471, 3427
PscI ACATGT 1 cut(s) 81
PshBI ATTAAT 1 cut(s) 2154
PsiI TTATAA 1 cut(s) 4161
Psp1406I AACGTT 1 cut(s) 2310
Psp5II RGGWCCY 2 cut(s) 1471, 3427
Psp6I CCWGG 9 cut(s) 396, 592, 792, 1498, 2644, 2974, 3289, 3457, 3988
PspGI CCWGG 9 cut(s) 396, 592, 792, 1498, 2644, 2974, 3289, 3457, 3988
PspLI CGTACG 1 cut(s) 760
PspPI GGNCC 5 cut(s) 587, 1052, 1471, 3239, 3427
PspPPI RGGWCCY 2 cut(s) 1471, 3427
PspXI VCTCGAGB 1 cut(s) 2787
PstI CTGCAG 3 cut(s) 13, 3358, 3727
PstNI CAGNNNCTG 1 cut(s) 905
PsuI RGATCY 3 cut(s) 865, 1848, 3469
PvuII CAGCTG 1 cut(s) 2009
RseI CAYNNNNRTG 8 cut(s) 747, 899, 1160, 1500, 3332, 3567, 3935, 4013
SapI GCTCTTC 1 cut(s) 1455
Sau96I GGNCC 5 cut(s) 587, 1052, 1471, 3239, 3427
SchI GAGTC 6 cut(s) 568, 763, 1886, 2593, 2679, 3358
SduI GDGCHC 5 cut(s) 442, 504, 1066, 2284, 3155
SexAI ACCWGGT 2 cut(s) 2644, 3457
SfcI CTRYAG 8 cut(s) 9, 2208, 3024, 3354, 3412, 3723, 3735, 3822
Sfr274I CTCGAG 1 cut(s) 2787
SinI GGWCC 4 cut(s) 587, 1471, 3239, 3427
SlaI CTCGAG 1 cut(s) 2787
SmaI CCCGGG 1 cut(s) 1822
SmiMI CAYNNNNRTG 8 cut(s) 747, 899, 1160, 1500, 3332, 3567, 3935, 4013
SmlI CTYRAG 8 cut(s) 941, 1561, 1657, 2228, 2467, 2787, 4146, 4214
SmoI CTYRAG 8 cut(s) 941, 1561, 1657, 2228, 2467, 2787, 4146, 4214
SpeI ACTAGT 2 cut(s) 713, 2932
SphI GCATGC 1 cut(s) 1557
SseBI AGGCCT 1 cut(s) 3078
SspI AATATT 1 cut(s) 2258
SspMI CTAG 8 cut(s) 435, 714, 1488, 2199, 2933, 3087, 3245, 4065
StuI AGGCCT 1 cut(s) 3078
StyI CCWWGG 4 cut(s) 2093, 2287, 3244, 3465
TaiI ACGT 2 cut(s) 2313, 3950
TaqI TCGA 6 cut(s) 369, 411, 512, 2166, 2788, 4173
TatI WGTACW 2 cut(s) 453, 1125
TauI GCSGC 4 cut(s) 8, 64, 169, 3692
TfiI GAWTC 7 cut(s) 366, 393, 1381, 2354, 2492, 2593, 2846
TseFI GTSAC 4 cut(s) 680, 1259, 2081, 2833
Tsp45I GTSAC 4 cut(s) 680, 1259, 2081, 2833
TspGWI ACGGA 3 cut(s) 1393, 1679, 1985
TspMI CCCGGG 1 cut(s) 1820
Vha464I CTTAAG 4 cut(s) 941, 1657, 2228, 4214
VneI GTGCAC 1 cut(s) 3151
VpaK11BI GGWCC 4 cut(s) 587, 1471, 3239, 3427
VspI ATTAAT 1 cut(s) 2154
XagI CCTNNNNNAGG 3 cut(s) 597, 2228, 3072
XapI RAATTY 5 cut(s) 695, 1700, 1857, 3556, 4176
XceI RCATGY 2 cut(s) 85, 1557
XcmI CCANNNNNNNNNTGG 4 cut(s) 1870, 2100, 2210, 3055
XhoI CTCGAG 1 cut(s) 2787
XmaI CCCGGG 1 cut(s) 1820
XmaJI CCTAGG 1 cut(s) 3244
XmiI GTMKAC 2 cut(s) 1599, 2250
XmnI GAANNNNTTC 2 cut(s) 699, 3787
XspI CTAG 8 cut(s) 435, 714, 1488, 2199, 2933, 3087, 3245, 4065
Zsp2I ATGCAT 4 cut(s) 106, 424, 883, 4210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.