pycom16g12190
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
8500389 .. 8500742
354 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g12190.1

Sequence Viewer

Length: 354 bp
ATGATCATTGGACCTGCAAAAGCTCTGTTCATGGATGAAATATCTAACGGCTTAGATAGTTCCACCACTTTCCAACTCGTATCTTGCCTTCAGCATTTCGTGCATATCTCAGATGCTACCGCGTTGATTTCACTTCTTCAGCCTGCACCAGAGACATTTGATCTCTTCGATGATGTTGTCTTAATGGCAGAAGGGAAGATTGTGTTTCACGGGCCAAGAACTTCTATTGTCAAATTTTTCGAGGAGTGTGGGTTTAAGTGCCCAGAAAGGAAAGGTGTTGCAGACTTCCTTCAGGAGGTAGGTTATTGTCGTACTCATATCTTAATCGAATTGTCTTATTTTCTATACCATTGA

Protein Analysis

118

Amino Acids

13.16

Weight (kDa)

5.0

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane_7 PF19055 47 - 97 2.3e-06 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AccII CGCG 1 cut(s) 122
AciI CCGC 1 cut(s) 120
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 3 cut(s) 74, 122, 275
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 295
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 146
AoxI GGCC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 11, 212
AvaII GGWCC 1 cut(s) 11
BaeGI GKGCMC 1 cut(s) 263
BarI GAAGNNNNNNTAC 2 cut(s) 72, 104
BceAI ACGGC 1 cut(s) 64
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 11, 212
BmsI GCATC 1 cut(s) 103
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 257
BseSI GKGCMC 1 cut(s) 263
BsgI GTGCAG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 2 cut(s) 3, 160
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 122
BspFNI CGCG 1 cut(s) 122
BspMI ACCTGC 1 cut(s) 22
BssMI GATC 2 cut(s) 3, 160
Bst6I CTCTTC 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 52, 109
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 40
BstFNI CGCG 1 cut(s) 122
BstKTI GATC 2 cut(s) 6, 163
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 2 cut(s) 3, 160
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 263
BstUI CGCG 1 cut(s) 122
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 40
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 11, 212
Csp6I GTAC 1 cut(s) 312
CviAII CATG 1 cut(s) 31
CviJI RGCY 4 cut(s) 23, 51, 142, 214
CviKI_1 RGCY 4 cut(s) 23, 51, 142, 214
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 2 cut(s) 52, 109
DpnI GATC 2 cut(s) 5, 162
DpnII GATC 2 cut(s) 3, 160
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 11
Eco57I CTGAAG 3 cut(s) 74, 122, 275
EcoNI CCTNNNNNAGG 1 cut(s) 293
FaeI CATG 1 cut(s) 34
FaiI YATR 4 cut(s) 32, 105, 318, 346
FatI CATG 1 cut(s) 30
FbaI TGATCA 1 cut(s) 3
FokI GGATG 1 cut(s) 47
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 293
HpyAV CCTTC 3 cut(s) 98, 185, 299
HpyCH4V TGCA 4 cut(s) 17, 103, 146, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 2 cut(s) 52, 109
Hsp92II CATG 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 160
LpnPI CCDG 5 cut(s) 27, 156, 162, 276, 278
LweI GCATC 1 cut(s) 103
MalI GATC 2 cut(s) 5, 162
MboI GATC 2 cut(s) 3, 160
MboII GAAGA 3 cut(s) 128, 157, 208
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 2 cut(s) 233, 329
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 2 cut(s) 235, 289
MseI TTAA 3 cut(s) 182, 255, 323
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 2 cut(s) 3, 160
NlaIII CATG 1 cut(s) 34
PspPI GGNCC 2 cut(s) 11, 212
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SaqAI TTAA 3 cut(s) 182, 255, 323
Sau3AI GATC 2 cut(s) 3, 160
Sau96I GGNCC 2 cut(s) 11, 212
SduI GDGCHC 1 cut(s) 263
SetI ASST 5 cut(s) 16, 25, 277, 300, 304
SfaNI GCATC 1 cut(s) 103
SinI GGWCC 1 cut(s) 11
Sse9I AATT 2 cut(s) 233, 329
SsiI CCGC 1 cut(s) 120
TaqI TCGA 3 cut(s) 168, 240, 327
TasI AATT 2 cut(s) 233, 329
Tru1I TTAA 3 cut(s) 182, 255, 323
Tru9I TTAA 3 cut(s) 182, 255, 323
TspDTI ATGAA 2 cut(s) 19, 51
VpaK11BI GGWCC 1 cut(s) 11
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.