Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000245

Physical Location & Seq

Genomic Coordinates Reverse (-)

31786593 .. 31787180

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00025300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGATGAAATATCAACAGGGTTGGACAGTTCCACAACCTTTCAGATTGTTAAATACATGAGACAGATGGTTCATATTCTGGATGTGTCAATGGTCATCTCTCTCTTGCAGCCTGCTCCTGAGACGTATGATCTTTTTGATGATGTTATGCTTCTTTCCGACGGTCAGATTGTTTATCAAGGCCCACGTGAGAATGTCCTTGAGTTCTTTGAATATATGGGATTCAAATGCCCTGACAGAAAAGGTGTTGCAGACTTCTTGCAAGAATACTGGTTTAAGAAGAACCAACCTTACAGATTAGTCACAGTGTCAGATTTTGTTCGGGCCTTCCGCTCCTTCCATGTTGGCCAACGGCTTGGGGAAGAATTAAAGGTTCCTTATGATAAAAGACATGCCAATCCTGCTGCTTTGGTTAAGGAAAAGTATGGAATATCCAATATAGAGCTCTTCAAAGCATGCTTTGCAAGGGAATGGCTCCTAATGAAGCGGAACTCTTTTGTGTACATATTCAAAACTACACAGATTGCCATCATGGCTACAATTGCTTTGACCGTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

186

Amino Acids

21.7

Weight (kDa)

6.83

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_7	PF19055	37 - 86	1.9e-06	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66950 AT2G36380
fragaria_vesca	FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica	MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica	Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis	pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis	RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata	RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora	Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa	Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha	Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana	Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	333
AciI	CCGC	2 cut(s)	331, 487
AcoI	YGGCCR	1 cut(s)	346
AcvI	CACGTG	1 cut(s)	188
AfaI	GTAC	1 cut(s)	503
AgsI	TTSAA	4 cut(s)	212, 226, 451, 511
AluBI	AGCT	1 cut(s)	445
AluI	AGCT	1 cut(s)	445
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	2 cut(s)	55, 116
AoxI	GGCC	3 cut(s)	181, 324, 346
ApeKI	GCWGC	2 cut(s)	109, 404
AspS9I	GGNCC	2 cut(s)	182, 324
BalI	TGGCCA	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	447
BbrPI	CACGTG	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	121, 391
BccI	CCATC	2 cut(s)	61, 536
BceAI	ACGGC	1 cut(s)	368
BcoDI	GTCTC	2 cut(s)	55, 116
BglI	GCCNNNNNGGC	1 cut(s)	533
BisI	GCNGC	2 cut(s)	110, 405
BlsI	GCNGC	2 cut(s)	111, 406
BmgT120I	GGNCC	2 cut(s)	182, 324
BmiI	GGNNCC	2 cut(s)	375, 476
BpuEI	CTTGAG	1 cut(s)	221
BsaAI	YACGTR	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	527
Bse1I	ACTGG	1 cut(s)	275
Bse8I	GATNNNNATC	1 cut(s)	527
BseGI	GGATG	2 cut(s)	10, 88
BseJI	GATNNNNATC	1 cut(s)	527
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	121, 391
BshFI	GGCC	3 cut(s)	183, 326, 348
BsiHKAI	GWGCWC	1 cut(s)	447
BsmAI	GTCTC	2 cut(s)	55, 116
BsmBI	CGTCTC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	183, 326, 348
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	2 cut(s)	331, 487
BspANI	GGCC	3 cut(s)	183, 326, 348
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	375, 476
BspQI	GCTCTTC	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	333
BsrGI	TGTACA	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	275
BssMI	GATC	1 cut(s)	130
Bst4CI	ACNGT	4 cut(s)	29, 164, 307, 553
Bst6I	CTCTTC	1 cut(s)	452
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	501
BstBAI	YACGTR	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	114, 457
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	10, 88
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	2 cut(s)	55, 116
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 461, 533, 542
BstNSI	RCATGY	2 cut(s)	395, 459
BstV1I	GCAGC	2 cut(s)	121, 391
BstXI	CCANNNNNNTGG	1 cut(s)	356
BsuRI	GGCC	3 cut(s)	183, 326, 348
BtsCI	GGATG	2 cut(s)	10, 88
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	2 cut(s)	114, 457
Cfr13I	GGNCC	2 cut(s)	182, 324
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	5 cut(s)	58, 341, 392, 456, 532
CviJI	RGCY	8 cut(s)	112, 183, 326, 348, 355, 445, 475, 536
CviKI_1	RGCY	8 cut(s)	112, 183, 326, 348, 355, 445, 475, 536
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Ecl136II	GAGCTC	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	447
Eco53kI	GAGCTC	1 cut(s)	445
Eco72I	CACGTG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	447
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	5 cut(s)	61, 344, 395, 459, 535
FatI	CATG	5 cut(s)	57, 340, 391, 455, 531
Fnu4HI	GCNGC	2 cut(s)	110, 405
FokI	GGATG	2 cut(s)	17, 95
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	2 cut(s)	110, 405
GluI	GCNGC	2 cut(s)	110, 405
HaeIII	GGCC	3 cut(s)	183, 326, 348
Hin1II	CATG	5 cut(s)	61, 344, 395, 459, 535
HinfI	GANTC	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	5 cut(s)	45, 160, 168, 313, 560
Hpy188III	TCNNGA	2 cut(s)	80, 119
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	337, 346
HpyCH4III	ACNGT	4 cut(s)	29, 164, 307, 553
HpyCH4IV	ACGT	2 cut(s)	125, 187
HpyCH4V	TGCA	4 cut(s)	109, 251, 262, 464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 461, 533, 542
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	125, 187
Hsp92II	CATG	5 cut(s)	61, 344, 395, 459, 535
Kzo9I	GATC	1 cut(s)	130
LguI	GCTCTTC	1 cut(s)	452
LmnI	GCTCC	3 cut(s)	121, 338, 480
LpnPI	CCDG	7 cut(s)	3, 65, 126, 132, 246, 256, 414
Lsp1109I	GCAGC	2 cut(s)	121, 391
MaeII	ACGT	2 cut(s)	125, 187
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	1 cut(s)	132
MbiI	CCGCTC	1 cut(s)	333
MboI	GATC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	292, 374, 439
MfeI	CAATTG	1 cut(s)	540
MhlI	GDGCHC	1 cut(s)	447
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	2 cut(s)	365, 540
MluNI	TGGCCA	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	183
Mox20I	TGGCCA	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	4 cut(s)	51, 276, 368, 414
Msp20I	TGGCCA	1 cut(s)	348
MunI	CAATTG	1 cut(s)	540
MwoI	GCNNNNNNNGC	4 cut(s)	401, 461, 533, 542
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	5 cut(s)	61, 344, 395, 459, 535
NlaIV	GGNNCC	2 cut(s)	375, 476
NmuCI	GTSAC	1 cut(s)	301
NspI	RCATGY	2 cut(s)	395, 459
PaeI	GCATGC	1 cut(s)	459
PciSI	GCTCTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	111, 406
PmaCI	CACGTG	1 cut(s)	188
PmlI	CACGTG	1 cut(s)	188
Ppu21I	YACGTR	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	447
PspCI	CACGTG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	375, 476
PspPI	GGNCC	2 cut(s)	182, 324
PsrI	GAACNNNNNNTAC	2 cut(s)	275, 307
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
SacI	GAGCTC	1 cut(s)	447
SapI	GCTCTTC	1 cut(s)	452
SaqAI	TTAA	4 cut(s)	51, 276, 368, 414
SatI	GCNGC	2 cut(s)	110, 405
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	2 cut(s)	182, 324
SduI	GDGCHC	1 cut(s)	447
SetI	ASST	7 cut(s)	41, 128, 190, 247, 292, 375, 447
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SphI	GCATGC	1 cut(s)	459
Sse9I	AATT	2 cut(s)	365, 540
SsiI	CCGC	2 cut(s)	331, 487
SstI	GAGCTC	1 cut(s)	447
TaaI	ACNGT	4 cut(s)	29, 164, 307, 553
TaiI	ACGT	2 cut(s)	128, 190
TasI	AATT	2 cut(s)	365, 540
TatI	WGTACW	1 cut(s)	501
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	4 cut(s)	51, 276, 368, 414
Tru9I	TTAA	4 cut(s)	51, 276, 368, 414
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	2 cut(s)	109, 404
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	21, 62, 497
TspRI	CASTG	1 cut(s)	312
XceI	RCATGY	2 cut(s)	395, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.