RchiOBHm_Chr7g0187231

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000245
Physical Location & Seq
Forward (+)
6987388 .. 6988237
850 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16712

Sequence Viewer

Length: 159 bp
ATGTTTGGTCATGGAAATGTTTGGTCAATTGGATTGGATAAAAATATATATATTTCTGTTTGTAGTGCAATGCCATCAGGTTTTTCACCACAATACTCATCGGCGTACTTTTTGTGTTCTTTTAATATGCGACCGAGTTACAAGTTTTCTCCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.83

Weight (kDa)

8.74

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 78
BccI CCATC 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 134
BsiEI CGRYCG 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 75
BstMCI CGRYCG 1 cut(s) 134
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 11
CviQI GTAC 1 cut(s) 106
FaeI CATG 1 cut(s) 14
FaiI YATR 5 cut(s) 12, 47, 49, 51, 128
FatI CATG 1 cut(s) 10
FspEI CC 8 cut(s) 7, 15, 20, 63, 86, 87, 102, 147
Hin1II CATG 1 cut(s) 14
HphI GGTGA 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 68
Hsp92II CATG 1 cut(s) 14
LpnPI CCDG 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 137
MfeI CAATTG 1 cut(s) 27
MluCI AATT 1 cut(s) 27
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 15
MunI CAATTG 1 cut(s) 27
NlaIII CATG 1 cut(s) 14
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 123
SetI ASST 1 cut(s) 82
SgeI CNNG 4 cut(s) 23, 90, 147, 154
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 1 cut(s) 27
TaqII GACCGA 1 cut(s) 148
TasI AATT 1 cut(s) 27
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.