RchiOBHm_Chr5g0055051

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
57821174 .. 57829190
8017 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33210

Sequence Viewer

Length: 4359 bp
ATGGCGGCTGCAGCATTGGCCGGAGAAGGCTTGGTGCGGTCTGGAAGTAGCATGAATTGGCGGGAAACAAGCATGAAAGACATGTGGAATGATCAGCAAGATGCATTCCAGAGGAGTGAGAGGAAGCGGGAGGAGGAGGAGGAGCTGAGGTGGGCTGCAATAGAGCGGCTGCCCACTTATGACAGGTTGAAGAAGGGGATGTTGAGGCAGGTCATGAGCAATGGAAGGATAACGCATGATGAGGTTGATGTTACAAAGCTTGGGGCAGATGATAAGAAGAAGTTGATGGATAGCATACTAAAGGTTGTTGAGGATGATAATGAAAAATTTCTCAGGAAGCTCAGGGACAGGACTGACAGGGTTGGAATCGAGGTTCCAAAGATTGAAGTGAGATTCCAGGATTTATCAGTCGAGGGAGATGCATATGTTGGGACCAGAGCACTTCCAACTCTGTACAATTCCACCTTAAATGCAATAGAGGGAGTTCTTGGACTTTGTGGGCTCTCTCCATCGAAGAAAAGGGTAGTGAAGATACTTCAAGATGTGAGTGGAATAGTGAGACCAGCAAGAATGACTCTACTTCTTGGACCTCCTGCCTCAGGAAAAACAACATTTCTAAAGGCACTTTCTGGAAAACTTGATGATGATTTAAGGGTAACAGGAAAAGTTACCTATTGTGGTCACGAGTTCTTCGAATTTGTTCCTCAGAGAACTAGTGCATATATTAGCCAGCATGATCTTCACTATGGTGAGATGACAGTACGCGAGACTCTTGATTTCTCGGGACAGTGCCTGGGAGTCGGAAGCAGGTATGAAATGCTGGCAGAAGCATCAAGGCGTGAGAAACAAGAAGGCATACAACCGGATCCTGAGATTGATGCATTCATGAAAGCCACAGCAGTGGCTGGCCAGAAAAGTAGTTTGATGACAGATTATGTTCTTAAGATACTTGGATTGGATATTTGCGCTGATACTATGGTGGGTGATGACATGAGGCGGGGCATCTCTGGAGGGCAGAAGAAGCGTGTAACTACTGGGGAAATGTTAGTTGGGCCAGCAAGAGCCCTTTTCATGGATGAAATATCAACAGGATTGGATAGTTCCACCACATTTCAAATCGTCAAGTACATGAGGCAGATGGCTCATATTATGGACATGACAATGATCATTTCTCTCCTGCAGCCTGCACCAGAGACATTTGACCTCTTTGATGACATTATCCTACTCTCAGAGGGTCAAATTGTCTATCAAGGTTCCCGTGACAATGTTCTTGAATTTTTTGAACATATGGGCTTCAAATGCCCAAAGAGGAAAGGTGTTGCAGACTTTTTGCAAGAAGTAACTTCCAAGAAGGATCAAGAACAATACTGGTTTAAAAGGAATCAACCTTACAAGTATATCTCCGTACCCGAGTTTGCTCAAACCTTCAACTCCTTTTATATTAGTCAAAGGCTTTCTGAAGAGCTAAGAGTCCCTTATGATAAGTCTAGTACCCATCCAGGTGCTTTGGTGAGAGAAAAGTACGGAATATCTAATTGGGAACTCTTCAAGGCATGCTTCTCAAGGGAATGGCTACTGATGAAGCGCAATTCATTTGTATACATATTCAAGACCACCCAGATAACAATCATGGCTGTAATCGCATTGACTGTGTTCTTAAGAACAGAAATGAAAGCTGGTCAAATACAAGATGCAGCAAAATTTTGGGGTGCATTGTTTTTCAGTCTCATCAATGTCATGTTTAATGGAATGGCAGAGCTTTCCATGACAGTTTTCAGGCTTCCTGTGTTCTATAAACAGAGAGATGCCTTGTTCTATCCAGGGTGGGCTTTCGGGTTGCCCCTTTGGATCCTCAGAATTCCCATTTCAGTAATGGAGTCAGGCATTTGGATCATTCTTACTTATTACTCCATTGGTTTTGCACCTGCTGCAAGTAGGTTTTTCAAACAATTCTTGGCTTTCTTTGGAGTGCATCAGATGGCTCTCTCCCTCTTCCGTTTCATTGCAGCTGTTGGAAGAACAGAAGTTGTTGCACAAACAATTGGAACATTTACCTTGCTACTGGTCTTTGTGCTTGGAGGTTTTATAGTTGCCAAAGGTGACATTAAACCATGGATGATCTGGGGCTACTATATTTCTCCTATGATGTATGGGCAAAATGCCATTGCCATTAATGAGTTTCTAGACAAAAGATGGAGCAGCCCCATAACTGGTTCTAGCCAACCTACAGTTGGAAAGACCCTCCTTAAGGAAAGAGGACTGTTTGTAGACGAATATTGGTATTGGATTTGCATTGGAGCACTCCTTGGATATTCTCTTCTCTTTAACGTTCTTTTCATTGCAGCACTAACATTTTTGAAGCCACTTGGTGATTCTAAAGCGGTAATTTCGGACAACCACTCTGATCTCACTACTAAAAAGCAGTTGACATCCAATTCAGAAGGCACTGATACTCCGGTGAGGAATACCAGAGAGCCTACAAGCTCAAGCATGAGTTCTTCAAATACTGAAACTCGAAGAGGAATGGTGTTGCCCTTCCAGCCCCTTTCACTTGCTTTTGACCATGTTAACTACTATGTGGATATGCCTGCTGAAATGAAGAGTCAAGGGATTCAAGAGAGCAGATTACAACTGCTACGAGATGTCAGTGGTGCTTTCAGACCAGGTGTCTTAACAGCTTTAGTAGGAGTCAGTGGTGCTGGAAAGACAACCTTGATGGATGTTTTATCAGGAAGGAAGACTGGTGGGTACATTGAGGGTAGTATAAGCATTTCTGGCTACCCAAAAAACCAAGCTACATTTGCTCGAGTTAGTGGTTATTGTGAACAAAATGACATCCATTCTCCTTATGTGACTGTCTATGAATCCCTTTTGTACTCTGCATGGTTGCGTCTTGCTTCAGATGTAAAGAAGGAAACACGAAAGATGTTTGTTGAAGAAGTCATGGAACTAGTTGAGCTTAACCCACTGAGGAATGCTTTAGTCGGACTTCCAGGAGTAGATGGTCTTTCAACTGAACAGCGAAAGAGGCTCACAATAGCTGTAGAGTTGGTAGCCAATCCCTCCATAATCTGTATGGATGAACCTACATCAGGCCTTGATGCTAGAGCCGCTGCAATTGTTATGCGTGCTGTAAGGAACACAGTAGATACTGGCCGGACTGTGGTGTGCACAATCCACCAACCAAGCATACATATCTTTGAAGCTTTTGATGAGCTACTTTTGATGAAAAGAGGAGGAAAAGTTATTTATGCTGGACCCCTAGGTTCTCATTCTCACAAACTTGTTGAGTATTTTGAGAGTATTCCAGGGGTTCAAAAAATAAAAGACGGGTACAATCCTGCCACATGGATGTTAGAAATCAGCTCCACTGCAGTTGAGACTCAACTCCACATTGATTTTGCAGAAGTTTACGCCAATTCGGACCTCTATAGGAGAAATCAGGACCTCATCAGGCAGCTAAGCACTCCACAACCAGGTTCCAAGGATCTCTACTTCCCAACCCGCTACTCACAAAGTTTCTTAATTCAGTGCAAGGCTTGCTTCTGGAAACAACACTGGTCTTACTGGAGGAATTCGCAATACAATGCAATCCGATTTTTCATGACAATTGTTATTGGTATCTTATTTGGTGTAATCTTTTGGGGAAAAGGAGACAAGATACACAAACAACAAGACTTGATTAACCTGTTGGGAGCAACTTATGCCGCTGTTCTTTTCCTCGGAGCCTCCAATGCTTCTGCAGTGCAATCTGTAGTGGCAACTGAGAGAACAGTATTCTATCGTGAACGGGCAGCAGGAATGTATTCCGAGTTGCCTTATGCCTTTGCTCAGGTGGCTATAGAAACAATTTACGTTACAATACAGACCTTCATCTATACTCTTCTGCTATATTCCATGATTGGATACCAGTGGAAGGTGGTCAAGTTCCTGTACTTCTATTACTTCATATTCATGTGCTTCACATACTTTTCAATGTACGGTATGATGGTGGTTGCGCTAACTCCTGGCCACCAGATTGCTGCCATTGTTATGTCCTTCTTCCTGAGCTTTTGGAACTTGTTTTCTGGTTTCCTCATTCCTAGACCGCTAATCCCAATATGGTGGAGGTGGTACTACTGGTGTTCCCCAGTCGCTTGGACAATCTATGGCATTTTCACATCTCAAGTTGGTGATTATAAGAGTTTACTCGAAATTCCGGGTGCAGCACCAAAGGCAGTTGATGCATTCCTTAAGGAGTATTTAGGCTATGACTATGACTTTCTTGTACCAGTAGTCCTTGCTCATGTTGGTTGGGTGCTCCTCTTCTTCTTTGTATTTGCCTATGGTATCAAGTTCCTCAACTTCCAAAGGAGATGA

Protein Analysis

1452

Amino Acids

164.72

Weight (kDa)

8.63

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 104 - 153 3.6e-10 ABC-transporter N-terminal
ABC_tran PF00005 179 - 360 6.9e-13 ABC transporter
ABC2_membrane PF01061 515 - 727 1.9e-46 ABC-2 type transporter
PDR_assoc PF08370 732 - 796 8.1e-28 Plant PDR ABC transporter associated
ABC_tran PF00005 879 - 1031 3.1e-20 ABC transporter
ABC2_membrane_7 PF19055 1060 - 1130 9.5e-06 ABC-2 type transporter
ABC2_membrane PF01061 1177 - 1387 3.8e-56 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4179
AarI CACCTGC 1 cut(s) 1933
Acc36I ACCTGC 3 cut(s) 199, 798, 1933
AccBSI CCGCTC 1 cut(s) 166
AccI GTMKAC 2 cut(s) 1599, 2268
AccII CGCG 1 cut(s) 765
AclI AACGTT 1 cut(s) 2328
AclWI GGATC 7 cut(s) 860, 873, 1362, 1843, 1856, 1898, 3495
AcoI YGGCCR 4 cut(s) 18, 907, 3154, 4009
AcsI RAATTY 7 cut(s) 326, 695, 1274, 1700, 1857, 3574, 4194
AcuI CTGAAG 2 cut(s) 1479, 2883
AdeI CACNNNGTG 1 cut(s) 2369
AfiI CCNNNNNNNGG 9 cut(s) 599, 1072, 2210, 2231, 2248, 3092, 3163, 3476, 3916
AflII CTTAAG 4 cut(s) 941, 1657, 2246, 4232
AflIII ACRYGT 1 cut(s) 81
AhdI GACNNNNNGTC 1 cut(s) 2666
AhlI ACTAGT 2 cut(s) 713, 2950
AjnI CCWGG 9 cut(s) 396, 792, 1498, 1819, 2662, 2992, 3307, 3475, 4006
AjuI GAANNNNNNNTTGG 4 cut(s) 1032, 1064, 1519, 1551
AleI CACNNNNGTG 2 cut(s) 747, 899
AloI GAACNNNNNNTCC 2 cut(s) 357, 389
Alw21I GWGCWC 4 cut(s) 442, 2302, 3173, 4302
Alw26I GTCTC 6 cut(s) 553, 761, 1187, 1730, 3374, 3648
Alw44I GTGCAC 1 cut(s) 3169
AlwI GGATC 7 cut(s) 860, 873, 1362, 1843, 1856, 1898, 3495
AlwNI CAGNNNCTG 2 cut(s) 793, 905
Ama87I CYCGRG 3 cut(s) 781, 1409, 2805
AoxI GGCC 6 cut(s) 18, 907, 1052, 3094, 3154, 4009
ApaLI GTGCAC 1 cut(s) 3169
ApoI RAATTY 7 cut(s) 326, 695, 1274, 1700, 1857, 3574, 4194
AseI ATTAAT 1 cut(s) 2172
Asp700I GAANNNNTTC 3 cut(s) 327, 699, 3805
AspA2I CCTAGG 1 cut(s) 3262
AspLEI GCGC 3 cut(s) 968, 1587, 4000
AspS9I GGNCC 6 cut(s) 432, 587, 1052, 3257, 3424, 3445
AsuC2I CCSGG 1 cut(s) 4200
AsuHPI GGTGA 7 cut(s) 761, 995, 1522, 2111, 2381, 2470, 4184
AsuII TTCGAA 1 cut(s) 693
AvaI CYCGRG 3 cut(s) 781, 1409, 2805
AvaII GGWCC 5 cut(s) 432, 587, 3257, 3424, 3445
AvrII CCTAGG 1 cut(s) 3262
AxyI CCTNAGG 1 cut(s) 598
BaeGI GKGCMC 1 cut(s) 3173
BaeI ACNNNNGTAYC 4 cut(s) 963, 996, 2442, 2475
BalI TGGCCA 2 cut(s) 909, 4011
BamHI GGATCC 2 cut(s) 865, 1848
BanII GRGCYC 2 cut(s) 504, 1066
BauI CACGAG 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 2744
Bbv12I GWGCWC 4 cut(s) 442, 2302, 3173, 4302
BbvCI CCTCAGC 1 cut(s) 146
BccI CCATC 9 cut(s) 280, 517, 1132, 1503, 1972, 2187, 2710, 2996, 3982
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 9 cut(s) 398, 794, 1500, 1821, 2664, 2994, 3309, 3477, 4008
BciVI GTATCC 1 cut(s) 3899
BclI TGATCA 2 cut(s) 91, 1164
BcnI CCSGG 1 cut(s) 4200
BcoDI GTCTC 6 cut(s) 553, 761, 1187, 1730, 3374, 3648
BcuI ACTAGT 2 cut(s) 713, 2950
BfaI CTAG 8 cut(s) 714, 1488, 2183, 2217, 2951, 3105, 3263, 4083
BfmI CTRYAG 9 cut(s) 9, 1178, 2226, 3042, 3372, 3430, 3741, 3753, 3840
BfrI CTTAAG 4 cut(s) 941, 1657, 2246, 4232
BfuAI ACCTGC 3 cut(s) 199, 798, 1933
BfuI GTATCC 1 cut(s) 3899
BlnI CCTAGG 1 cut(s) 3262
BlpI GCTNAGC 1 cut(s) 3461
Bme18I GGWCC 5 cut(s) 432, 587, 3257, 3424, 3445
BmeRI GACNNNNNGTC 1 cut(s) 2666
BmeT110I CYCGRG 3 cut(s) 781, 1409, 2805
BmgT120I GGNCC 6 cut(s) 432, 587, 1052, 3257, 3424, 3445
BmiI GGNNCC 8 cut(s) 375, 433, 867, 1255, 1850, 3259, 3481, 3727
BmrI ACTGGG 2 cut(s) 1044, 4124
BmuI ACTGGG 2 cut(s) 1044, 4124
BpiI GAAGAC 1 cut(s) 2744
BpmI CTGGAG 2 cut(s) 1029, 3589
Bpu10I CCTNAGC 4 cut(s) 146, 341, 3831, 4046
Bpu1102I GCTNAGC 1 cut(s) 3461
Bpu14I TTCGAA 1 cut(s) 693
BpuEI CTTGAG 3 cut(s) 1546, 2470, 4149
BpuMI CCSGG 1 cut(s) 4200
BsaBI GATNNNNATC 1 cut(s) 1625
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 8 cut(s) 793, 1820, 2111, 2305, 3262, 3308, 3483, 3721
BsaWI WCCGGW 2 cut(s) 862, 2455
BsaXI ACNNNNNCTCC 6 cut(s) 134, 164, 2437, 2467, 3228, 3258
Bsc4I CCNNNNNNNGG 9 cut(s) 599, 1072, 2210, 2231, 2248, 3092, 3163, 3476, 3916
Bse21I CCTNAGG 1 cut(s) 598
Bse3DI GCAATG 4 cut(s) 226, 2001, 2163, 2337
Bse8I GATNNNNATC 1 cut(s) 1625
BseBI CCWGG 9 cut(s) 398, 794, 1500, 1821, 2664, 2994, 3309, 3477, 4008
BseDI CCNNGG 8 cut(s) 793, 1820, 2111, 2305, 3262, 3308, 3483, 3721
BseJI GATNNNNATC 1 cut(s) 1625
BseLI CCNNNNNNNGG 9 cut(s) 599, 1072, 2210, 2231, 2248, 3092, 3163, 3476, 3916
BseMI GCAATG 4 cut(s) 226, 2001, 2163, 2337
BseRI GAGGAG 7 cut(s) 127, 146, 149, 152, 155, 3249, 4292
BseSI GKGCMC 1 cut(s) 3173
BsgI GTGCAG 2 cut(s) 1170, 4224
Bsh1236I CGCG 1 cut(s) 765
BshFI GGCC 6 cut(s) 20, 909, 1054, 3096, 3156, 4011
BsiHKAI GWGCWC 4 cut(s) 442, 2302, 3173, 4302
BsiHKCI CYCGRG 3 cut(s) 781, 1409, 2805
BsiSI CCGG 5 cut(s) 21, 863, 2456, 3157, 4199
BslFI GGGAC 4 cut(s) 359, 445, 798, 1457
BslI CCNNNNNNNGG 9 cut(s) 599, 1072, 2210, 2231, 2248, 3092, 3163, 3476, 3916
BsmAI GTCTC 6 cut(s) 553, 761, 1187, 1730, 3374, 3648
BsmFI GGGAC 4 cut(s) 359, 445, 798, 1457
BsmI GAATGC 4 cut(s) 104, 881, 2980, 4226
BsnI GGCC 6 cut(s) 20, 909, 1054, 3096, 3156, 4011
Bso31I GGTCTC 1 cut(s) 553
BsoBI CYCGRG 3 cut(s) 781, 1409, 2805
Bsp119I TTCGAA 1 cut(s) 693
Bsp1286I GDGCHC 6 cut(s) 442, 504, 1066, 2302, 3173, 4302
Bsp1407I TGTACA 1 cut(s) 453
Bsp1720I GCTNAGC 1 cut(s) 3461
Bsp19I CCATGG 1 cut(s) 2111
BspANI GGCC 6 cut(s) 20, 909, 1054, 3096, 3156, 4011
BspFNI CGCG 1 cut(s) 765
BspHI TCATGA 3 cut(s) 213, 885, 3603
BspLI GGNNCC 8 cut(s) 375, 433, 867, 1255, 1850, 3259, 3481, 3727
BspMAI CTGCAG 4 cut(s) 13, 1182, 3376, 3745
BspMI ACCTGC 3 cut(s) 199, 798, 1933
BspPI GGATC 7 cut(s) 860, 873, 1362, 1843, 1856, 1898, 3495
BspQI GCTCTTC 1 cut(s) 1455
BspT104I TTCGAA 1 cut(s) 693
BspTI CTTAAG 4 cut(s) 941, 1657, 2246, 4232
BspTNI GGTCTC 1 cut(s) 553
BsrBI CCGCTC 1 cut(s) 166
BsrDI GCAATG 4 cut(s) 226, 2001, 2163, 2337
BsrGI TGTACA 1 cut(s) 453
BssECI CCNNGG 8 cut(s) 793, 1820, 2111, 2305, 3262, 3308, 3483, 3721
BssNAI GTATAC 1 cut(s) 1600
BssSI CACGAG 1 cut(s) 683
BssT1I CCWWGG 4 cut(s) 2111, 2305, 3262, 3483
Bst1107I GTATAC 1 cut(s) 1600
Bst2BI CACGAG 1 cut(s) 683
Bst2UI CCWGG 9 cut(s) 398, 794, 1500, 1821, 2664, 2994, 3309, 3477, 4008
Bst6I CTCTTC 8 cut(s) 1455, 1550, 1997, 2322, 2512, 2594, 3888, 4310
BstAFI CTTAAG 4 cut(s) 941, 1657, 2246, 4232
BstAPI GCANNNNNTGC 4 cut(s) 1928, 3540, 3704, 4223
BstAUI TGTACA 1 cut(s) 453
BstBI TTCGAA 1 cut(s) 693
BstC8I GCNNGC 9 cut(s) 731, 822, 907, 1056, 1185, 1555, 2589, 3129, 3541
BstDSI CCRYGG 1 cut(s) 2111
BstENI CCTNNNNNAGG 3 cut(s) 597, 2246, 3090
BstFNI CGCG 1 cut(s) 765
BstHHI GCGC 3 cut(s) 968, 1587, 4000
BstMAI GTCTC 6 cut(s) 553, 761, 1187, 1730, 3374, 3648
BstNI CCWGG 9 cut(s) 398, 794, 1500, 1821, 2664, 2994, 3309, 3477, 4008
BstNSI RCATGY 2 cut(s) 85, 1557
BstSFI CTRYAG 9 cut(s) 9, 1178, 2226, 3042, 3372, 3430, 3741, 3753, 3840
BstSLI GKGCMC 1 cut(s) 3173
BstUI CGCG 1 cut(s) 765
BstV2I GAAGAC 1 cut(s) 2744
BstX2I RGATCY 3 cut(s) 865, 1848, 3487
BstXI CCANNNNNNTGG 3 cut(s) 901, 4104, 4137
BstYI RGATCY 3 cut(s) 865, 1848, 3487
BstZ17I GTATAC 1 cut(s) 1600
Bsu36I CCTNAGG 1 cut(s) 598
BsuI GTATCC 1 cut(s) 3899
BsuRI GGCC 6 cut(s) 20, 909, 1054, 3096, 3156, 4011
BtgI CCRYGG 1 cut(s) 2111
BtsI GCAGTG 3 cut(s) 906, 3369, 3750
BveI ACCTGC 3 cut(s) 199, 798, 1933
Cac8I GCNNGC 9 cut(s) 731, 822, 907, 1056, 1185, 1555, 2589, 3129, 3541
CaiI CAGNNNCTG 2 cut(s) 793, 905
CciI TCATGA 3 cut(s) 213, 885, 3603
CfoI GCGC 3 cut(s) 968, 1587, 4000
Cfr13I GGNCC 6 cut(s) 432, 587, 1052, 3257, 3424, 3445
CseI GACGC 1 cut(s) 2879
CsiI ACCWGGT 2 cut(s) 2662, 3475
CspCI CAANNNNNGTGG 2 cut(s) 3358, 3393
DraI TTTAAA 1 cut(s) 1375
DraIII CACNNNGTG 1 cut(s) 2369
DriI GACNNNNNGTC 1 cut(s) 2666
EaeI YGGCCR 4 cut(s) 18, 907, 3154, 4009
Eam1104I CTCTTC 8 cut(s) 1455, 1550, 1997, 2322, 2512, 2594, 3888, 4310
Eam1105I GACNNNNNGTC 1 cut(s) 2666
EarI CTCTTC 8 cut(s) 1455, 1550, 1997, 2322, 2512, 2594, 3888, 4310
Eco130I CCWWGG 4 cut(s) 2111, 2305, 3262, 3483
Eco147I AGGCCT 1 cut(s) 3096
Eco24I GRGCYC 2 cut(s) 504, 1066
Eco31I GGTCTC 1 cut(s) 553
Eco47I GGWCC 5 cut(s) 432, 587, 3257, 3424, 3445
Eco57I CTGAAG 2 cut(s) 1479, 2883
Eco81I CCTNAGG 1 cut(s) 598
Eco88I CYCGRG 3 cut(s) 781, 1409, 2805
EcoNI CCTNNNNNAGG 3 cut(s) 597, 2246, 3090
EcoO109I RGGNCCY 1 cut(s) 3445
EcoRI GAATTC 2 cut(s) 1857, 3574
EcoRII CCWGG 9 cut(s) 396, 792, 1498, 1819, 2662, 2992, 3307, 3475, 4006
EcoT14I CCWWGG 4 cut(s) 2111, 2305, 3262, 3483
EcoT22I ATGCAT 4 cut(s) 106, 424, 883, 4228
EcoT38I GRGCYC 2 cut(s) 504, 1066
ErhI CCWWGG 4 cut(s) 2111, 2305, 3262, 3483
FalI AAGNNNNNCTT 8 cut(s) 1459, 1491, 1541, 1573, 2696, 2728, 3527, 3559
FaqI GGGAC 4 cut(s) 359, 445, 798, 1457
FauI CCCGC 4 cut(s) 54, 120, 990, 3512
FauNDI CATATG 2 cut(s) 424, 1287
FbaI TGATCA 2 cut(s) 91, 1164
FblI GTMKAC 2 cut(s) 1599, 2268
FriOI GRGCYC 2 cut(s) 504, 1066
FspBI CTAG 8 cut(s) 714, 1488, 2183, 2217, 2951, 3105, 3263, 4083
GlaI GCGC 3 cut(s) 967, 1586, 3999
GsuI CTGGAG 2 cut(s) 1029, 3589
HaeIII GGCC 6 cut(s) 20, 909, 1054, 3096, 3156, 4011
HapII CCGG 5 cut(s) 21, 863, 2456, 3157, 4199
HgaI GACGC 1 cut(s) 2879
HhaI GCGC 3 cut(s) 968, 1587, 4000
Hin6I GCGC 3 cut(s) 966, 1585, 3998
HinP1I GCGC 3 cut(s) 966, 1585, 3998
HincII GTYRAC 2 cut(s) 2427, 2569
HindII GTYRAC 2 cut(s) 2427, 2569
HindIII AAGCTT 2 cut(s) 257, 3204
HpaI GTTAAC 1 cut(s) 2569
HpaII CCGG 5 cut(s) 21, 863, 2456, 3157, 4199
HphI GGTGA 7 cut(s) 761, 995, 1522, 2111, 2381, 2470, 4184
Hpy166II GTNNAC 9 cut(s) 1600, 2269, 2427, 2569, 2825, 3171, 3412, 3788, 4187
Hpy8I GTNNAC 9 cut(s) 1600, 2269, 2427, 2569, 2825, 3171, 3412, 3788, 4187
HpyCH4IV ACGT 2 cut(s) 2328, 3855
HpySE526I ACGT 2 cut(s) 2328, 3855
HspAI GCGC 3 cut(s) 966, 1585, 3998
Ksp22I TGATCA 2 cut(s) 91, 1164
KspAI GTTAAC 1 cut(s) 2569
LguI GCTCTTC 1 cut(s) 1455
LmnI GCTCC 7 cut(s) 142, 2196, 2297, 3371, 3695, 3725, 4305
MabI ACCWGGT 2 cut(s) 2662, 3475
MaeI CTAG 8 cut(s) 714, 1488, 2183, 2217, 2951, 3105, 3263, 4083
MaeII ACGT 2 cut(s) 2328, 3855
MbiI CCGCTC 1 cut(s) 166
MfeI CAATTG 3 cut(s) 2040, 3117, 3609
MflI RGATCY 3 cut(s) 865, 1848, 3487
MhlI GDGCHC 6 cut(s) 442, 504, 1066, 2302, 3173, 4302
MlsI TGGCCA 2 cut(s) 909, 4011
MluNI TGGCCA 2 cut(s) 909, 4011
MlyI GAGTC 8 cut(s) 568, 763, 807, 1479, 1886, 2611, 2697, 3376
MmeI TCCRAC 6 cut(s) 343, 470, 781, 1993, 2212, 2965
Mox20I TGGCCA 2 cut(s) 909, 4011
Mph1103I ATGCAT 4 cut(s) 106, 424, 883, 4228
MroXI GAANNNNTTC 3 cut(s) 327, 699, 3805
MscI TGGCCA 2 cut(s) 909, 4011
MslI CAYNNNNRTG 7 cut(s) 747, 899, 1160, 1500, 3350, 3953, 4031
Msp20I TGGCCA 2 cut(s) 909, 4011
MspA1I CMGCKG 3 cut(s) 2009, 3113, 3710
MspCI CTTAAG 4 cut(s) 941, 1657, 2246, 4232
MspI CCGG 5 cut(s) 21, 863, 2456, 3157, 4199
MunI CAATTG 3 cut(s) 2040, 3117, 3609
Mva1269I GAATGC 4 cut(s) 104, 881, 2980, 4226
MvaI CCWGG 9 cut(s) 398, 794, 1500, 1821, 2664, 2994, 3309, 3477, 4008
MvnI CGCG 1 cut(s) 765
NciI CCSGG 1 cut(s) 4200
NcoI CCATGG 1 cut(s) 2111
NdeI CATATG 2 cut(s) 424, 1287
NlaIV GGNNCC 8 cut(s) 375, 433, 867, 1255, 1850, 3259, 3481, 3727
NmuCI GTSAC 4 cut(s) 680, 1259, 2099, 2851
NsiI ATGCAT 4 cut(s) 106, 424, 883, 4228
NspI RCATGY 2 cut(s) 85, 1557
NspV TTCGAA 1 cut(s) 693
OliI CACNNNNGTG 2 cut(s) 747, 899
PaeI GCATGC 1 cut(s) 1557
PaeR7I CTCGAG 1 cut(s) 2805
PagI TCATGA 3 cut(s) 213, 885, 3603
PaqCI CACCTGC 1 cut(s) 1933
PceI AGGCCT 1 cut(s) 3096
PciI ACATGT 1 cut(s) 81
PciSI GCTCTTC 1 cut(s) 1455
PcsI WCGNNNNNNNCGW 1 cut(s) 690
PctI GAATGC 4 cut(s) 104, 881, 2980, 4226
PdmI GAANNNNTTC 3 cut(s) 327, 699, 3805
PfeI GAWTC 6 cut(s) 366, 393, 1381, 2372, 2611, 2864
PfoI TCCNGGA 2 cut(s) 396, 2992
PleI GAGTC 8 cut(s) 568, 763, 806, 1478, 1885, 2610, 2696, 3376
PpsI GAGTC 8 cut(s) 568, 763, 806, 1478, 1885, 2610, 2696, 3376
PpuMI RGGWCCY 1 cut(s) 3445
PscI ACATGT 1 cut(s) 81
PshBI ATTAAT 1 cut(s) 2172
PsiI TTATAA 1 cut(s) 4179
Psp1406I AACGTT 1 cut(s) 2328
Psp5II RGGWCCY 1 cut(s) 3445
Psp6I CCWGG 9 cut(s) 396, 792, 1498, 1819, 2662, 2992, 3307, 3475, 4006
PspGI CCWGG 9 cut(s) 396, 792, 1498, 1819, 2662, 2992, 3307, 3475, 4006
PspN4I GGNNCC 8 cut(s) 375, 433, 867, 1255, 1850, 3259, 3481, 3727
PspPI GGNCC 6 cut(s) 432, 587, 1052, 3257, 3424, 3445
PspPPI RGGWCCY 1 cut(s) 3445
PspXI VCTCGAGB 1 cut(s) 2805
PstI CTGCAG 4 cut(s) 13, 1182, 3376, 3745
PstNI CAGNNNCTG 2 cut(s) 793, 905
PsuI RGATCY 3 cut(s) 865, 1848, 3487
PvuII CAGCTG 1 cut(s) 2009
RseI CAYNNNNRTG 7 cut(s) 747, 899, 1160, 1500, 3350, 3953, 4031
SapI GCTCTTC 1 cut(s) 1455
Sau96I GGNCC 6 cut(s) 432, 587, 1052, 3257, 3424, 3445
SchI GAGTC 8 cut(s) 568, 763, 807, 1479, 1886, 2611, 2697, 3376
SduI GDGCHC 6 cut(s) 442, 504, 1066, 2302, 3173, 4302
SexAI ACCWGGT 2 cut(s) 2662, 3475
SfcI CTRYAG 9 cut(s) 9, 1178, 2226, 3042, 3372, 3430, 3741, 3753, 3840
Sfr274I CTCGAG 1 cut(s) 2805
SfuI TTCGAA 1 cut(s) 693
SinI GGWCC 5 cut(s) 432, 587, 3257, 3424, 3445
SlaI CTCGAG 1 cut(s) 2805
SmiMI CAYNNNNRTG 7 cut(s) 747, 899, 1160, 1500, 3350, 3953, 4031
SmlI CTYRAG 8 cut(s) 941, 1561, 1657, 2246, 2485, 2805, 4164, 4232
SmoI CTYRAG 8 cut(s) 941, 1561, 1657, 2246, 2485, 2805, 4164, 4232
SpeI ACTAGT 2 cut(s) 713, 2950
SphI GCATGC 1 cut(s) 1557
SseBI AGGCCT 1 cut(s) 3096
SspI AATATT 1 cut(s) 2276
SspMI CTAG 8 cut(s) 714, 1488, 2183, 2217, 2951, 3105, 3263, 4083
StuI AGGCCT 1 cut(s) 3096
StyI CCWWGG 4 cut(s) 2111, 2305, 3262, 3483
TaiI ACGT 2 cut(s) 2331, 3858
TaqI TCGA 7 cut(s) 369, 411, 512, 693, 2515, 2806, 4191
TatI WGTACW 4 cut(s) 453, 1125, 2874, 3933
TauI GCSGC 4 cut(s) 8, 169, 3113, 3710
TfiI GAWTC 6 cut(s) 366, 393, 1381, 2372, 2611, 2864
TseFI GTSAC 4 cut(s) 680, 1259, 2099, 2851
Tsp45I GTSAC 4 cut(s) 680, 1259, 2099, 2851
TspGWI ACGGA 3 cut(s) 1393, 1539, 1985
Vha464I CTTAAG 4 cut(s) 941, 1657, 2246, 4232
VneI GTGCAC 1 cut(s) 3169
VpaK11BI GGWCC 5 cut(s) 432, 587, 3257, 3424, 3445
VspI ATTAAT 1 cut(s) 2172
XagI CCTNNNNNAGG 3 cut(s) 597, 2246, 3090
XapI RAATTY 7 cut(s) 326, 695, 1274, 1700, 1857, 3574, 4194
XbaI TCTAGA 1 cut(s) 2182
XceI RCATGY 2 cut(s) 85, 1557
XcmI CCANNNNNNNNNTGG 4 cut(s) 1870, 2118, 2228, 3073
XhoI CTCGAG 1 cut(s) 2805
XmaJI CCTAGG 1 cut(s) 3262
XmiI GTMKAC 2 cut(s) 1599, 2268
XmnI GAANNNNTTC 3 cut(s) 327, 699, 3805
XspI CTAG 8 cut(s) 714, 1488, 2183, 2217, 2951, 3105, 3263, 4083
Zsp2I ATGCAT 4 cut(s) 106, 424, 883, 4228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.