Rmu_co8474941.1_g000001

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8474941.1
Physical Location & Seq
Reverse (-)
1 .. 1836
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8474941.1_g000001.1.cds

Sequence Viewer

Length: 1146 bp
atggaactagttgagcttaacccactgaggaatgctttagtcggacttccaggagtagatggtctttcaactgaacagcggaagaggctcacaatagctgtagagttggtagccaatccctccataatctgtatggatgaacctacatcaggccttgatgctagagctgctgcaattgttatgcgtgctgtaaggaacacagtagatactggccgaactgttgtgtgcacaatccaccaaccaagcatagatatctttgaagcttttgatgaactacttttgatgaaaagaggaggaaaagttatttatgctggacccctaggttctcattctcacaaacttgttgagtattttgagagtattccaagggttcaaaaaataaaagacgggtacaatcctgccacatggatgttagaaatcagctccactgcagttgagactcaactccacattgattttgcagaagtttacgccaattcggacctctataggagaaatcaggacctcatcaggcagctaagcactccacaaccaggttccaaggatctctacttcccaacccgctactcacaaagtttcttaattcagtgcaaggcttgcttctggaaacaacactggtcttactggaggaattcgcactacaatgcaatccggtttttcatgacaattgttattggtatcttatttggtgtaatcttttggggaaaaggagacaagatacacaaacaacaagacttgattaacctgttgggagcaacttatgccgctgtacttttcctcggagcctccaatgcttctgcagtgcaatctgtagtggcaactgagagaacagtattctatcgtgaacgggcagcaggaatgtattccgagttgccttatgcctttgctcaggtggctatagaaacaatttatgttgcaatacagaccttcatctatactcttctgctatattccatgattggataccagtggaaggtggtcaagttcctgtatttctattacttcatattcatgtgcttcacgtacttttcaatgtacggtatgatggtggttgcgctaactcctggccaccagattgctgccattgttatgtccttcttcctgagcttttggaacttgttttctggtttcctcatccctagaccg

Protein Analysis

382

Amino Acids

43.56

Weight (kDa)

8.64

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 79, 562, 765
AclWI GGATC 1 cut(s) 552
AcoI YGGCCR 2 cut(s) 211, 1066
AcsI RAATTY 1 cut(s) 631
AfaI GTAC 4 cut(s) 392, 771, 1025, 1037
AfiI CCNNNNNNNGG 3 cut(s) 149, 533, 973
AgsI TTSAA 4 cut(s) 69, 260, 374, 1032
AhlI ACTAGT 1 cut(s) 7
AjnI CCWGG 3 cut(s) 49, 532, 1063
AluBI AGCT 7 cut(s) 16, 98, 167, 263, 423, 517, 1107
AluI AGCT 7 cut(s) 16, 98, 167, 263, 423, 517, 1107
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 2 cut(s) 431, 705
Alw44I GTGCAC 1 cut(s) 226
AlwI GGATC 1 cut(s) 552
AoxI GGCC 3 cut(s) 151, 211, 1066
ApaLI GTGCAC 1 cut(s) 226
ApeKI GCWGC 5 cut(s) 167, 170, 514, 851, 1079
ApoI RAATTY 1 cut(s) 631
Asp700I GAANNNNTTC 1 cut(s) 862
AspA2I CCTAGG 1 cut(s) 319
AspLEI GCGC 1 cut(s) 1057
AspS9I GGNCC 3 cut(s) 314, 481, 502
AvaII GGWCC 3 cut(s) 314, 481, 502
AvrII CCTAGG 1 cut(s) 319
BaeGI GKGCMC 1 cut(s) 230
BalI TGGCCA 1 cut(s) 1068
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 5 cut(s) 154, 157, 526, 863, 1066
BccI CCATC 2 cut(s) 53, 1039
BciT130I CCWGG 3 cut(s) 51, 534, 1065
BciVI GTATCC 1 cut(s) 956
BcoDI GTCTC 2 cut(s) 431, 705
BcuI ACTAGT 1 cut(s) 7
BfaI CTAG 4 cut(s) 8, 162, 320, 1140
BfmI CTRYAG 6 cut(s) 99, 429, 487, 798, 810, 897
BfuI GTATCC 1 cut(s) 956
BisI GCNGC 6 cut(s) 168, 171, 515, 765, 852, 1080
BlnI CCTAGG 1 cut(s) 319
BlpI GCTNAGC 1 cut(s) 518
BlsI GCNGC 6 cut(s) 169, 172, 516, 766, 853, 1081
Bme1390I CCNGG 3 cut(s) 51, 534, 1065
Bme18I GGWCC 3 cut(s) 314, 481, 502
BmgT120I GGNCC 3 cut(s) 314, 481, 502
BmiI GGNNCC 3 cut(s) 316, 538, 784
BmrFI CCNGG 3 cut(s) 51, 534, 1065
BmsI GCATC 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 646
Bpu10I CCTNAGC 2 cut(s) 888, 1103
Bpu1102I GCTNAGC 1 cut(s) 518
BsaAI YACGTR 1 cut(s) 1023
BsaJI CCNNGG 4 cut(s) 319, 365, 540, 778
BsaWI WCCGGW 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 533, 973
Bse1I ACTGG 4 cut(s) 214, 620, 629, 967
BseBI CCWGG 3 cut(s) 51, 534, 1065
BseDI CCNNGG 4 cut(s) 319, 365, 540, 778
BseGI GGATG 3 cut(s) 142, 414, 1134
BseLI CCNNNNNNNGG 3 cut(s) 149, 533, 973
BseMII CTCAG 4 cut(s) 17, 813, 902, 1094
BseNI ACTGG 4 cut(s) 214, 620, 629, 967
BseRI GAGGAG 1 cut(s) 306
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 5 cut(s) 154, 157, 526, 863, 1066
BshFI GGCC 3 cut(s) 153, 213, 1068
BsiHKAI GWGCWC 1 cut(s) 230
BsiSI CCGG 1 cut(s) 652
BslI CCNNNNNNNGG 3 cut(s) 149, 533, 973
BsmAI GTCTC 2 cut(s) 431, 705
BsmI GAATGC 1 cut(s) 37
BsnI GGCC 3 cut(s) 153, 213, 1068
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 544
Bsp1720I GCTNAGC 1 cut(s) 518
BspACI CCGC 3 cut(s) 79, 562, 765
BspANI GGCC 3 cut(s) 153, 213, 1068
BspCNI CTCAG 4 cut(s) 18, 814, 901, 1095
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 3 cut(s) 316, 538, 784
BspMAI CTGCAG 2 cut(s) 433, 802
BspPI GGATC 1 cut(s) 552
BsrI ACTGG 4 cut(s) 214, 620, 629, 967
BssECI CCNNGG 4 cut(s) 319, 365, 540, 778
BssMI GATC 1 cut(s) 544
BssT1I CCWWGG 3 cut(s) 319, 365, 540
Bst2UI CCWGG 3 cut(s) 51, 534, 1065
Bst4CI ACNGT 4 cut(s) 202, 220, 832, 1040
Bst6I CTCTTC 2 cut(s) 77, 945
BstAPI GCANNNNNTGC 2 cut(s) 597, 761
BstBAI YACGTR 1 cut(s) 1023
BstC8I GCNNGC 2 cut(s) 186, 598
BstDEI CTNAG 5 cut(s) 26, 518, 822, 888, 1103
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 3 cut(s) 142, 414, 1134
BstHHI GCGC 1 cut(s) 1057
BstKTI GATC 1 cut(s) 547
BstMAI GTCTC 2 cut(s) 431, 705
BstMBI GATC 1 cut(s) 544
BstMWI GCNNNNNNNGC 6 cut(s) 85, 167, 597, 761, 791, 893
BstNI CCWGG 3 cut(s) 51, 534, 1065
BstSCI CCNGG 3 cut(s) 49, 532, 1063
BstSFI CTRYAG 6 cut(s) 99, 429, 487, 798, 810, 897
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 5 cut(s) 154, 157, 526, 863, 1066
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BsuI GTATCC 1 cut(s) 956
BsuRI GGCC 3 cut(s) 153, 213, 1068
BtsCI GGATG 3 cut(s) 142, 414, 1134
BtsI GCAGTG 2 cut(s) 426, 807
BtsIMutI CAGTG 6 cut(s) 23, 426, 593, 613, 807, 974
Cac8I GCNNGC 2 cut(s) 186, 598
CciI TCATGA 1 cut(s) 660
CfoI GCGC 1 cut(s) 1057
Cfr13I GGNCC 3 cut(s) 314, 481, 502
CsiI ACCWGGT 1 cut(s) 532
Csp6I GTAC 4 cut(s) 391, 770, 1024, 1036
CspCI CAANNNNNGTGG 2 cut(s) 415, 450
CviAII CATG 4 cut(s) 405, 661, 955, 1012
CviQI GTAC 4 cut(s) 391, 770, 1024, 1036
DdeI CTNAG 5 cut(s) 26, 518, 822, 888, 1103
DpnI GATC 1 cut(s) 546
DpnII GATC 1 cut(s) 544
EaeI YGGCCR 2 cut(s) 211, 1066
Eam1104I CTCTTC 2 cut(s) 77, 945
EarI CTCTTC 2 cut(s) 77, 945
Eco130I CCWWGG 3 cut(s) 319, 365, 540
Eco147I AGGCCT 1 cut(s) 153
Eco32I GATATC 1 cut(s) 253
Eco47I GGWCC 3 cut(s) 314, 481, 502
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 631
EcoRII CCWGG 3 cut(s) 49, 532, 1063
EcoRV GATATC 1 cut(s) 253
EcoT14I CCWWGG 3 cut(s) 319, 365, 540
ErhI CCWWGG 3 cut(s) 319, 365, 540
FaeI CATG 4 cut(s) 408, 664, 958, 1015
FalI AAGNNNNNCTT 2 cut(s) 584, 616
FatI CATG 4 cut(s) 404, 660, 954, 1011
FauI CCCGC 1 cut(s) 569
Fnu4HI GCNGC 6 cut(s) 168, 171, 515, 765, 852, 1080
FokI GGATG 3 cut(s) 149, 421, 1121
Fsp4HI GCNGC 6 cut(s) 168, 171, 515, 765, 852, 1080
FspBI CTAG 4 cut(s) 8, 162, 320, 1140
GlaI GCGC 1 cut(s) 1056
GluI GCNGC 6 cut(s) 168, 171, 515, 765, 852, 1080
GsuI CTGGAG 1 cut(s) 646
HaeIII GGCC 3 cut(s) 153, 213, 1068
HapII CCGG 1 cut(s) 652
HhaI GCGC 1 cut(s) 1057
Hin1II CATG 4 cut(s) 408, 664, 958, 1015
Hin6I GCGC 1 cut(s) 1055
HinP1I GCGC 1 cut(s) 1055
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 1 cut(s) 439
HpaII CCGG 1 cut(s) 652
Hpy166II GTNNAC 3 cut(s) 228, 469, 845
Hpy188I TCNGA 4 cut(s) 44, 481, 782, 868
Hpy188III TCNNGA 5 cut(s) 500, 604, 661, 842, 1102
Hpy8I GTNNAC 3 cut(s) 228, 469, 845
HpyAV CCTTC 3 cut(s) 937, 967, 1105
HpyCH4III ACNGT 4 cut(s) 202, 220, 832, 1040
HpyCH4IV ACGT 1 cut(s) 1022
HpyCH4V TGCA 9 cut(s) 173, 228, 431, 461, 591, 647, 800, 805, 917
HpyF10VI GCNNNNNNNGC 6 cut(s) 85, 167, 597, 761, 791, 893
HpyF3I CTNAG 5 cut(s) 26, 518, 822, 888, 1103
HpySE526I ACGT 1 cut(s) 1022
Hsp92II CATG 4 cut(s) 408, 664, 958, 1015
HspAI GCGC 1 cut(s) 1055
Kzo9I GATC 1 cut(s) 544
LmnI GCTCC 3 cut(s) 428, 752, 782
Lsp1109I GCAGC 5 cut(s) 154, 157, 526, 863, 1066
LweI GCATC 1 cut(s) 148
MabI ACCWGGT 1 cut(s) 532
MaeI CTAG 4 cut(s) 8, 162, 320, 1140
MaeII ACGT 1 cut(s) 1022
MalI GATC 1 cut(s) 546
MboI GATC 1 cut(s) 544
MboII GAAGA 3 cut(s) 94, 932, 1090
MfeI CAATTG 2 cut(s) 174, 666
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 1 cut(s) 230
MlsI TGGCCA 1 cut(s) 1068
MluCI AATT 6 cut(s) 174, 475, 582, 631, 666, 906
MluNI TGGCCA 1 cut(s) 1068
MlyI GAGTC 1 cut(s) 433
MmeI TCCRAC 1 cut(s) 22
Mox20I TGGCCA 1 cut(s) 1068
MroXI GAANNNNTTC 1 cut(s) 862
MscI TGGCCA 1 cut(s) 1068
MseI TTAA 3 cut(s) 18, 581, 741
MslI CAYNNNNRTG 4 cut(s) 407, 642, 1010, 1088
Msp20I TGGCCA 1 cut(s) 1068
MspA1I CMGCKG 2 cut(s) 79, 767
MspI CCGG 1 cut(s) 652
MspR9I CCNGG 3 cut(s) 51, 534, 1065
MunI CAATTG 2 cut(s) 174, 666
Mva1269I GAATGC 1 cut(s) 37
MvaI CCWGG 3 cut(s) 51, 534, 1065
MwoI GCNNNNNNNGC 6 cut(s) 85, 167, 597, 761, 791, 893
NdeII GATC 1 cut(s) 544
NlaIII CATG 4 cut(s) 408, 664, 958, 1015
NlaIV GGNNCC 3 cut(s) 316, 538, 784
PagI TCATGA 1 cut(s) 660
PceI AGGCCT 1 cut(s) 153
PctI GAATGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 862
PfoI TCCNGGA 1 cut(s) 49
PkrI GCNGC 6 cut(s) 169, 172, 516, 766, 853, 1081
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
Ppu21I YACGTR 1 cut(s) 1023
PpuMI RGGWCCY 1 cut(s) 502
Psp5II RGGWCCY 1 cut(s) 502
Psp6I CCWGG 3 cut(s) 49, 532, 1063
PspGI CCWGG 3 cut(s) 49, 532, 1063
PspN4I GGNNCC 3 cut(s) 316, 538, 784
PspPI GGNCC 3 cut(s) 314, 481, 502
PspPPI RGGWCCY 1 cut(s) 502
PstI CTGCAG 2 cut(s) 433, 802
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 4 cut(s) 392, 771, 1025, 1037
RsaNI GTAC 4 cut(s) 391, 770, 1024, 1036
RseI CAYNNNNRTG 4 cut(s) 407, 642, 1010, 1088
SaqAI TTAA 3 cut(s) 18, 581, 741
SatI GCNGC 6 cut(s) 168, 171, 515, 765, 852, 1080
Sau3AI GATC 1 cut(s) 544
Sau96I GGNCC 3 cut(s) 314, 481, 502
SchI GAGTC 1 cut(s) 433
ScrFI CCNGG 3 cut(s) 51, 534, 1065
SduI GDGCHC 1 cut(s) 230
SexAI ACCWGGT 1 cut(s) 532
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 6 cut(s) 99, 429, 487, 798, 810, 897
SinI GGWCC 3 cut(s) 314, 481, 502
SmiMI CAYNNNNRTG 4 cut(s) 407, 642, 1010, 1088
SpeI ACTAGT 1 cut(s) 7
Sse9I AATT 6 cut(s) 174, 475, 582, 631, 666, 906
SseBI AGGCCT 1 cut(s) 153
SsiI CCGC 3 cut(s) 79, 562, 765
SspMI CTAG 4 cut(s) 8, 162, 320, 1140
StuI AGGCCT 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 49, 532, 1063
StyI CCWWGG 3 cut(s) 319, 365, 540
TaaI ACNGT 4 cut(s) 202, 220, 832, 1040
TaiI ACGT 1 cut(s) 1025
TasI AATT 6 cut(s) 174, 475, 582, 631, 666, 906
TatI WGTACW 1 cut(s) 769
TauI GCSGC 1 cut(s) 767
Tru1I TTAA 3 cut(s) 18, 581, 741
Tru9I TTAA 3 cut(s) 18, 581, 741
TscAI CASTG 6 cut(s) 30, 433, 593, 620, 807, 974
TseI GCWGC 5 cut(s) 167, 170, 514, 851, 1079
TspDTI ATGAA 7 cut(s) 153, 285, 299, 649, 919, 994, 1000
TspRI CASTG 6 cut(s) 30, 433, 593, 620, 807, 974
VneI GTGCAC 1 cut(s) 226
VpaK11BI GGWCC 3 cut(s) 314, 481, 502
XagI CCTNNNNNAGG 1 cut(s) 147
XapI RAATTY 1 cut(s) 631
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmaJI CCTAGG 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 862
XspI CTAG 4 cut(s) 8, 162, 320, 1140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.