RLG00000013820

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
41858544 .. 41861722
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013820

Sequence Viewer

Length: 996 bp
ATGAACCCATCAAAAATCTTACTCTTGGAGAGTTGGAGTCTTGGGGAGAGCGGAGGCCGGAACTCAGGAAGACGAGCAGTCGCAGTAGACAGGAGGAAGGAGTGCAATGCCATCAGGTTTTTCACCACAATACTCATCGGCGTACTTTTTGGTGTCATCTTCGGGAAGAAAGGAAACGTGTTAGGGAAACAACAAGATATTGTTAACCTTCTGGGAGCAACCCATTCTGCTGTTCTTTTCCTTGGAGAGGGAAATGCTTCTGCTGTGCAATCTGTGGTTGCGATTGAGAGAACAGTTTTCTACCGAGAAAGAGCAGCAGGAATGTATTCAGAGTTGCCTTATGCATTTGCTCAGGTGGCCATTGAGACGATTTATGTTGCTATACAAACCATCATTTATTCCCTTCTTTTATTTACCATGATCGGCTACGAATTTAAAGTTGAGAAATTTTTGTATTTCTACTACTTTATATTCATGTGTTTTACGTACTTCTCAATGTATGGAATGATGGTGGTTGCCCTAACTCCTGGCCATCAAATCGCTGCAATTGTCATGGGCTTCTTCATGAGTTTCTGGAATTTGTTCTCCGGTTTCCTCCTCGGAGAGTCTCCTCCTTACTCTCTCGCTCTCTCTGCTAGGTCTGCTTCTAAGCTTCTCTCTCAAGGTGCAGGCAAATGGTATGGCAACATACTTTGTGACATTGACTACATATCTTGGCCTTTGGTGTGGCAGAATATTACTTGCTTGACATACTTTCTCCACCAAATGGGGCGGAGATCATGTGCAGTGACCACGCTGGGTAGAGATGGTAGTGATTTGACAGCTACAACCATTGGTAAAGCACGTTGGCAGGAACTTAACCATGTTGTGGAAGAACTGGAGAAAATTGTTGTTGTCAATCTTCAGCACCAATCAATAATATCTCTCATTGGAAATGTGCAGAAATCATCACTAATATTAGAGAAGGTGTTGTACTGTGTTGGGCCAAGTACTTAG

Protein Analysis

332

Amino Acids

36.96

Weight (kDa)

8.8

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 31 - 199 5.5e-36 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 766, 868
AccBSI CCGCTC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 87
AciI CCGC 2 cut(s) 51, 772
AcoI YGGCCR 2 cut(s) 357, 529
AcsI RAATTY 3 cut(s) 431, 446, 577
AcuI CTGAAG 1 cut(s) 887
AfaI GTAC 4 cut(s) 144, 488, 974, 991
AfiI CCNNNNNNNGG 3 cut(s) 247, 766, 868
AflIII ACRYGT 1 cut(s) 177
AhdI GACNNNNNGTC 1 cut(s) 77
AjnI CCWGG 1 cut(s) 526
AluBI AGCT 2 cut(s) 652, 824
AluI AGCT 2 cut(s) 652, 824
Alw26I GTCTC 2 cut(s) 359, 612
AoxI GGCC 5 cut(s) 55, 357, 529, 716, 983
ApeKI GCWGC 2 cut(s) 314, 542
ApoI RAATTY 3 cut(s) 431, 446, 577
Asp700I GAANNNNTTC 3 cut(s) 256, 325, 581
AspS9I GGNCC 1 cut(s) 983
AsuHPI GGTGA 1 cut(s) 115
BalI TGGCCA 2 cut(s) 359, 531
BarI GAAGNNNNNNTAC 2 cut(s) 956, 988
BbsI GAAGAC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 326, 529
BccI CCATC 6 cut(s) 16, 119, 398, 502, 540, 800
BciT130I CCWGG 1 cut(s) 528
BcoDI GTCTC 2 cut(s) 359, 612
BfaI CTAG 1 cut(s) 636
BisI GCNGC 2 cut(s) 315, 543
BlsI GCNGC 2 cut(s) 316, 544
BmcAI AGTACT 1 cut(s) 991
Bme1390I CCNGG 1 cut(s) 528
BmeRI GACNNNNNGTC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 983
BmrFI CCNGG 1 cut(s) 528
BpiI GAAGAC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 899
Bpu10I CCTNAGC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 645
BsaAI YACGTR 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 241, 598
BsaWI WCCGGW 1 cut(s) 587
BsaXI ACNNNNNCTCC 2 cut(s) 766, 796
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 766, 868
Bse1I ACTGG 1 cut(s) 882
Bse3DI GCAATG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 2 cut(s) 241, 598
BseLI CCNNNNNNNGG 3 cut(s) 247, 766, 868
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 2 cut(s) 78, 365
BseNI ACTGG 1 cut(s) 882
BseRI GAGGAG 2 cut(s) 587, 600
BseXI GCAGC 2 cut(s) 326, 529
BseYI CCCAGC 1 cut(s) 796
BsgI GTGCAG 3 cut(s) 687, 804, 959
BshFI GGCC 5 cut(s) 57, 359, 531, 718, 985
BsiSI CCGG 2 cut(s) 58, 588
BslI CCNNNNNNNGG 3 cut(s) 247, 766, 868
BsmAI GTCTC 2 cut(s) 359, 612
BsmBI CGTCTC 1 cut(s) 359
BsnI GGCC 5 cut(s) 57, 359, 531, 718, 985
Bsp143I GATC 2 cut(s) 420, 776
BspACI CCGC 2 cut(s) 51, 772
BspANI GGCC 5 cut(s) 57, 359, 531, 718, 985
BspCNI CTCAG 2 cut(s) 77, 364
BspHI TCATGA 1 cut(s) 564
BsrBI CCGCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 112
BsrI ACTGG 1 cut(s) 882
BssECI CCNNGG 2 cut(s) 241, 598
BssMI GATC 2 cut(s) 420, 776
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 2 cut(s) 295, 977
BstBAI YACGTR 1 cut(s) 486
BstC8I GCNNGC 1 cut(s) 670
BstDEI CTNAG 4 cut(s) 64, 351, 648, 993
BstENI CCTNNNNNAGG 1 cut(s) 245
BstKTI GATC 2 cut(s) 423, 779
BstMAI GTCTC 2 cut(s) 359, 612
BstMBI GATC 2 cut(s) 420, 776
BstMWI GCNNNNNNNGC 3 cut(s) 356, 632, 641
BstNI CCWGG 1 cut(s) 528
BstSCI CCNGG 1 cut(s) 526
BstSNI TACGTA 1 cut(s) 486
BstV1I GCAGC 2 cut(s) 326, 529
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 5 cut(s) 57, 359, 531, 718, 985
BtsI GCAGTG 1 cut(s) 792
BtsIMutI CAGTG 1 cut(s) 792
Cac8I GCNNGC 1 cut(s) 670
CciI TCATGA 1 cut(s) 564
Cfr13I GGNCC 1 cut(s) 983
Csp6I GTAC 4 cut(s) 143, 487, 973, 990
CviAII CATG 6 cut(s) 418, 475, 553, 565, 780, 863
CviJI RGCY 9 cut(s) 57, 359, 426, 531, 558, 652, 718, 824, 985
CviKI_1 RGCY 9 cut(s) 57, 359, 426, 531, 558, 652, 718, 824, 985
CviQI GTAC 4 cut(s) 143, 487, 973, 990
DdeI CTNAG 4 cut(s) 64, 351, 648, 993
DpnI GATC 2 cut(s) 422, 778
DpnII GATC 2 cut(s) 420, 776
DraI TTTAAA 1 cut(s) 436
DriI GACNNNNNGTC 1 cut(s) 77
EaeI YGGCCR 2 cut(s) 357, 529
Eam1105I GACNNNNNGTC 1 cut(s) 77
EciI GGCGGA 1 cut(s) 787
Eco105I TACGTA 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 887
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 241
EcoT22I ATGCAT 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 241
Esp3I CGTCTC 1 cut(s) 359
FaeI CATG 6 cut(s) 421, 478, 556, 568, 783, 866
FatI CATG 6 cut(s) 417, 474, 552, 564, 779, 862
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 315, 543
Fsp4HI GCNGC 2 cut(s) 315, 543
FspBI CTAG 1 cut(s) 636
GluI GCNGC 2 cut(s) 315, 543
GsaI CCCAGC 1 cut(s) 800
GsuI CTGGAG 1 cut(s) 899
HaeIII GGCC 5 cut(s) 57, 359, 531, 718, 985
HapII CCGG 2 cut(s) 58, 588
Hin1II CATG 6 cut(s) 421, 478, 556, 568, 783, 866
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 2 cut(s) 37, 605
HpaI GTTAAC 1 cut(s) 205
HpaII CCGG 2 cut(s) 58, 588
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 88, 205
Hpy188I TCNGA 2 cut(s) 331, 602
Hpy188III TCNNGA 4 cut(s) 66, 163, 565, 574
Hpy8I GTNNAC 2 cut(s) 88, 205
HpyAV CCTTC 4 cut(s) 91, 218, 413, 958
HpyCH4III ACNGT 2 cut(s) 295, 977
HpyCH4IV ACGT 3 cut(s) 177, 485, 844
HpyCH4V TGCA 7 cut(s) 105, 268, 344, 545, 668, 785, 940
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 632, 641
HpyF3I CTNAG 4 cut(s) 64, 351, 648, 993
HpySE526I ACGT 3 cut(s) 177, 485, 844
Hsp92II CATG 6 cut(s) 421, 478, 556, 568, 783, 866
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 2 cut(s) 420, 776
LmnI GCTCC 1 cut(s) 215
Lsp1109I GCAGC 2 cut(s) 326, 529
MaeI CTAG 1 cut(s) 636
MaeII ACGT 3 cut(s) 177, 485, 844
MaeIII GTNAC 2 cut(s) 695, 787
MalI GATC 2 cut(s) 422, 778
MbiI CCGCTC 1 cut(s) 51
MboI GATC 2 cut(s) 420, 776
MboII GAAGA 6 cut(s) 81, 151, 178, 553, 884, 893
MfeI CAATTG 1 cut(s) 546
MlsI TGGCCA 2 cut(s) 359, 531
MluCI AATT 5 cut(s) 431, 446, 546, 577, 885
MluNI TGGCCA 2 cut(s) 359, 531
MlyI GAGTC 2 cut(s) 46, 614
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 6 cut(s) 47, 87, 241, 605, 608, 621
Mox20I TGGCCA 2 cut(s) 359, 531
Mph1103I ATGCAT 1 cut(s) 346
MroXI GAANNNNTTC 3 cut(s) 256, 325, 581
MscI TGGCCA 2 cut(s) 359, 531
MseI TTAA 3 cut(s) 204, 435, 858
Msp20I TGGCCA 2 cut(s) 359, 531
MspI CCGG 2 cut(s) 58, 588
MspR9I CCNGG 1 cut(s) 528
MunI CAATTG 1 cut(s) 546
MvaI CCWGG 1 cut(s) 528
MwoI GCNNNNNNNGC 3 cut(s) 356, 632, 641
NdeII GATC 2 cut(s) 420, 776
NlaIII CATG 6 cut(s) 421, 478, 556, 568, 783, 866
NmuCI GTSAC 2 cut(s) 695, 787
NsiI ATGCAT 1 cut(s) 346
PagI TCATGA 1 cut(s) 564
PdmI GAANNNNTTC 3 cut(s) 256, 325, 581
PflMI CCANNNNNTGG 2 cut(s) 766, 868
PkrI GCNGC 2 cut(s) 316, 544
PleI GAGTC 2 cut(s) 45, 613
PpsI GAGTC 2 cut(s) 45, 613
Ppu21I YACGTR 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 796
PspGI CCWGG 1 cut(s) 526
PspPI GGNCC 1 cut(s) 983
RsaI GTAC 4 cut(s) 144, 488, 974, 991
RsaNI GTAC 4 cut(s) 143, 487, 973, 990
SaqAI TTAA 3 cut(s) 204, 435, 858
SatI GCNGC 2 cut(s) 315, 543
Sau3AI GATC 2 cut(s) 420, 776
Sau96I GGNCC 1 cut(s) 983
ScaI AGTACT 1 cut(s) 991
SchI GAGTC 2 cut(s) 46, 614
ScrFI CCNGG 1 cut(s) 528
SmlI CTYRAG 1 cut(s) 660
SmoI CTYRAG 1 cut(s) 660
SnaBI TACGTA 1 cut(s) 486
Sse9I AATT 5 cut(s) 431, 446, 546, 577, 885
SsiI CCGC 2 cut(s) 51, 772
SspI AATATT 2 cut(s) 736, 957
SspMI CTAG 1 cut(s) 636
StyD4I CCNGG 1 cut(s) 526
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 295, 977
TaiI ACGT 3 cut(s) 180, 488, 847
TasI AATT 5 cut(s) 431, 446, 546, 577, 885
TatI WGTACW 2 cut(s) 972, 989
Tru1I TTAA 3 cut(s) 204, 435, 858
Tru9I TTAA 3 cut(s) 204, 435, 858
TscAI CASTG 1 cut(s) 792
TseFI GTSAC 2 cut(s) 695, 787
TseI GCWGC 2 cut(s) 314, 542
Tsp45I GTSAC 2 cut(s) 695, 787
TspDTI ATGAA 3 cut(s) 17, 463, 553
TspRI CASTG 1 cut(s) 792
Van91I CCANNNNNTGG 2 cut(s) 766, 868
XagI CCTNNNNNAGG 1 cut(s) 245
XapI RAATTY 3 cut(s) 431, 446, 577
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 3 cut(s) 256, 325, 581
XspI CTAG 1 cut(s) 636
ZrmI AGTACT 1 cut(s) 991
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.