Rw0G022120

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01026
Physical Location & Seq
Forward (+)
4061 .. 11789
7729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022120.1

Sequence Viewer

Length: 4320 bp
ATGGCGGCGGCAGCATTGGCCGGAGAAGGCTTGGTGCGGTCTGGAAGTAGCATGAAATGGCGGGCAACCAGCATGAAAGACATGTGGAATGATCAGCCAGACGCATTCCAAAGGAGTGAGAGGAAGCGGGAGGAGGAGGAGGAGCTGAGGTGGGCTGCAATAGAGCGGCTGCCCACTTATGACAGGTTGAAGAAGGGGATGTTGAGGCAGGTCATGAGCGATGGAAGGATAATGCATGATGAGGTTGATGTTACAAAGCTTGGGGCAGATGATAAGAAGAAGTTGATGGATAGCATACTAAAGGTTGTTGACGATGATAATGAGAAATTTCTCAGGAAGCTCAGGGACAGGACTGACAGGGTTGGAATCGAGGTTCCAAAGATTGAAGTGAGATTCCAGGATTTATCAGTCGAGGGAGATGCATATGTTGGGACCAGAGCACTTCCAACTCTGTACAATTCCACCTTAAATGCAATAGAGGTAGTGAAGATACTTCAAGATGTGAGTGGAATAGTGAGACCAGCAAGAATGACTCTACTTCTTGGACCTCCTGCCTCAGGAAAAACAACATTTCTAAAGGCACTTTCTGGAAAACTTGATGATGATTTAAGGGTAACAGGAAAAGTTACCTATTGTGGTCACGAGTTCTCCGAATTTGTTCCTCAGAGAACTAGTGCATATATTAGCCAGCATGATCTTCACTATGGTGAGATGACAGTACGCGAGACTCTTGATTTCTCTGGACGGTGCCTGGGAGTCGGAAGCAGGTATGAAATGCTGGCAGAAGCATCAAGGCGTGAGAAACAAGAAAGCATACAACTCGATCCTGAGATTGATGCATTCATGAAAGCCACAGCAGTGGCTGGCCAGAAAAGTAGTTTGATGACAGATTATGTTCTTAAGATACTTGGATTGGATATTTGCGCTGATACTATGGTGGGTGATGACATGAGGCGGGGCATCTCTGGAGGGCAGAAGAAGCGTGTAACTACTGGGGAAATGTTAGTTGGGCCAGCAAGAGCCCTTTTCATGGATGAAATATCAACAGGATTGGATAGTTCCACCACATTTCAAATTGTCAAGTACATGAGGCAGATGGCTCATATTATGGACATGACAATGGTCATTTCTCTCCTGCAGCCTGCACCAGAGACATTTGACCTCTTTGATGACATTATCCTACTCTCAGAGGGTCAAATTGTCTATCAAGGTTCCCGTGACAATGTTCTTGATTTTTTTGAACATATGGGCTTCAAATGCCCGAAAAGGAAAGGTGTTGCAGACTTTTTGCAAGAAGTAACTTCCAAGAAGGATCAAGAACAATACTGGTTTAAAAGGAATCAACCTTACAAGTATATCTCCGTACCCGAGTTTGCTCAAACCTTCAACTCCTTTTATATTAGTCAAAGGCTTTCTGAAGAGCTAAGAGTCCCTTATGATAAGTCTAGTACCCATCCAGGTGCTTTGGTGAGAGAAAAGTATGGAATATCTAATTGGGAACTCTTCAAGGCATGCTTCTCAAGGGAATGGCTACTGATGAAGCGCAATTCATTTGTATACATATTCAAGACCACCCAGATAACAATCATGGCTGTAATTGCATTGACTGTGTTCTTAAGAACGGAAATGAAAGCTGGTCAAATACAAGATGCAGCAAAATTTTGGGGTGCATTGTTTTTCAGTCTCATCAATGTCATGTTTAATGGAATGGCAGAGCTTGCCATGACAGTTTTCAGGCTTCCTGTGTTCTATAAACAGAGAGATGCCTTGTTCTATCCCGGGTGGGCTTTCGGGTTGCCCCTTTGGATCCTCAGAATTCCCATTTCAGTAATGGAGTCAGGCATTTGGATCATTCTTACTTATTACTCCATTGGTTTTGCACCTGCTGCAAGTAGGTTTTTCAAACAATTCTTGGCTTTCTTTGGAGTGCATCAGATGGCTCTCTCCCTCTTCCGTTTCATTGCAGCTGTTGGAAGAACAGAAGTTGTTGCACAAACAATTGGAACCTTTACCTTGCTACTGGTCTTTGTGCTTGGAGGTTTTATTGTTGCCAAAGGTGACATTAAACCATGGATGATCTGGGGCTACTATATTTCTCCTATGATGTATGGGCAAAATGCCATTGCCATTAATGAGTTTCTAGACAAAAGATGGAGCAGCCCCATAACTGGTTCTAGCCAACCTACAGTTGGAAAGACCCTCCTTAAGGAAAGAGGACTGTTTGTAGACGAATATTGGTATTGGATTTGCATTGGAGCACTCCTTGGATATTCTCTTCTCTTTAACGTTCTTTTCATTGCAGCACTAACATTTTTGAAGCCACTTGGTGATTCTAAAGCGGTAATTTCGGACGACCACTCTGATCTCAATACTAAAAAGCAGCTGACATCCAATTCAGAAGGCACTGATACTCCGGTGAGGAATACCAGACAGACTACAAGCTCAAGCATGAGTTCTTCAGATAATACTGAATCTCGAAGAGGAATGGTGTTGCCCTTCCAGCCCCTTTCACTTGCTTTTGACCATGTTAACTACTATGTGGATATGCCTGCTGAAATGAAGAGTCAAGGGATTCAAGAGAGCAGATTACAACTGCTACGAGATGTCAGTGGTGCTTTCAGACCAGGTGTCTTAACAGCTTTAGTAGGAGTCAGTGGTGCTGGAAAGACAACCTTGATGGATGTTTTATCAGGAAGGAAGACTGGTGGGTACATTGAGGGTAGTATAAGCATTTCTGGCTACCCAAAAAACCAAGCTACATTTGCTCGAGTTAGTGGTTATTGTGAACAAAATGACATCCATTCTCCTTATGTGACTGTCTATGAATCCCTTTTGTATTCTGCATGGTTGCGTCTTGCTTCAGATGTAAAGAAGGAAACACGAAAGATGTTTGTTGAAGAAGTCATGGAACTAGTTGAGCTTAACCCACTGAGGAATGCTTTAGTCGGACTTCCAGGAGTAGATGGTCTTTCAACTGAACAGCGGAAGAGGCTCACAATAGCTGTAGAGTTGGTAGCCAATCCCTCCATAATCTGTATGGATGAACCTACATCAGGCCTTGATGCTAGAGCTGCTGCAATTGTTATGCGTGCTGTAAGGAACACAGTAGATACTGGCCGAACTGTTGTGTGCACAATCCACCAACCAAGCATAGATATCTTTGAAGCTTTTGATGAACTACTTTTGATGAAAAGAGGAGGAAAAGTTATTTATGCTGGACCCCTAGGTTCTCATTCTCACAAACTTGTTGAGTATTTTGAGAGTATTCCAGGGGTTCAAAAAATAAAAGACGGTTACAATCCTGCCACATGGATGTTAGAAGTCAGCTCCACTGCAGTTGAGACTCAACTCCACATTGATTTTGCAGAAGTTTACGCCAATTCAGACCTCTATAGGAGAAATCAGGACCTCATCAGGCAGCTAAGCACTCCACAACCAGGTTCCAAGGATCTCTACTTCCCAACCCGCTACTCACAAAGTTTCTTAATTCAGTGCAAGGCTTGCTTCTGGAAACAACACTGGTCGTACTGGAGGAATTCGCACTACAATGCAATCCGGTTTTTCATGACAATTGTTATTGGTATCTTATTTGGTGTAATCTTTTGGGGAAAAGGAGACAAGATACACAAACAACAAGACTTGATTAACCTGTTGGGAGCAACTTATGCCGCTGTTCTTTTCCTCGGAGCCTCCAATGCTTCTGCAGTGCAATCTGTAGTGGCAACTGAGAGAACAGTATTCTATCGTGAACGGGCAGCAGGAATGTATTCCGAGTTGCCTTATGCCTTTGCTCAGGTGGCTATAGAAACAATTTATGTTGCAATACAGACCTTCATCTATACTCTTCTGCTATATTCCATGATTGGATACCAGTGGAAGGTGGTCAAGTTCCTGTATTTCTATTACTTCATATTCATGTGCTTCACGTACTTTTCAATGTACGGTATGATGGTGGTTGCGCTAACTCCTGGCCACCAGATTGCTGCCATTGTTATGTCCTTCTTCCTGAGCTTTTGGAACTTGTTTTCTGGTTTCCTCATCCCTAGACCGCTAATCCCAATATGGTGGAGGTGGTACTACTGGTGTTCCCCAGTCGCTTGGACAATCTATGGCATTTTCACATCTCAAGTTGGTGATTATAAGAGTTTACTCGAAATTCCGGGTGCAGCACCAAAGGCAGTTGATGCATTCCTTAAGGAGTATTTAGGCTATGACTATGACTTTCTTGTACCAGTAGTCCTTGCTCATGTTGGTTGGGTGCTCCTCTTCTTCTTTGTATTTGCCTATGGTATCAAGTTCCTCAACTTCCAAAGGAGATGA

Protein Analysis

1439

Amino Acids

163.3

Weight (kDa)

8.48

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 105 - 153 4.4e-10 ABC-transporter N-terminal
ABC_tran PF00005 165 - 346 2e-13 ABC transporter
ABC2_membrane PF01061 501 - 713 2.2e-46 ABC-2 type transporter
PDR_assoc PF08370 718 - 782 8e-28 Plant PDR ABC transporter associated
ABC_tran PF00005 866 - 1018 3e-20 ABC transporter
ABC2_membrane PF01061 1164 - 1374 9.6e-56 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4140
AarI CACCTGC 1 cut(s) 1891
Acc36I ACCTGC 3 cut(s) 199, 756, 1891
AccB1I GGYRCC 1 cut(s) 747
AccBSI CCGCTC 1 cut(s) 166
AccI GTMKAC 2 cut(s) 1557, 2226
AccII CGCG 1 cut(s) 723
AclI AACGTT 1 cut(s) 2286
AclWI GGATC 6 cut(s) 818, 1320, 1801, 1814, 1856, 3456
AcoI YGGCCR 4 cut(s) 18, 865, 3115, 3970
AcsI RAATTY 6 cut(s) 326, 653, 1658, 1815, 3535, 4155
AcuI CTGAAG 3 cut(s) 1437, 2442, 2844
AdeI CACNNNGTG 1 cut(s) 2327
AfiI CCNNNNNNNGG 8 cut(s) 557, 1030, 2168, 2189, 2206, 3053, 3437, 3877
AflII CTTAAG 4 cut(s) 899, 1615, 2204, 4193
AflIII ACRYGT 1 cut(s) 81
AhdI GACNNNNNGTC 1 cut(s) 2627
AhlI ACTAGT 2 cut(s) 671, 2911
AjnI CCWGG 8 cut(s) 396, 750, 1456, 2623, 2953, 3268, 3436, 3967
AjuI GAANNNNNNNTTGG 4 cut(s) 990, 1022, 1477, 1509
AleI CACNNNNGTG 2 cut(s) 705, 857
AloI GAACNNNNNNTCC 2 cut(s) 357, 389
Alw21I GWGCWC 4 cut(s) 442, 2260, 3134, 4263
Alw26I GTCTC 6 cut(s) 511, 719, 1145, 1688, 3335, 3609
Alw44I GTGCAC 1 cut(s) 3130
AlwI GGATC 6 cut(s) 818, 1320, 1801, 1814, 1856, 3456
AlwNI CAGNNNCTG 1 cut(s) 863
Ama87I CYCGRG 3 cut(s) 1367, 1778, 2766
AoxI GGCC 6 cut(s) 18, 865, 1010, 3055, 3115, 3970
ApaLI GTGCAC 1 cut(s) 3130
ApoI RAATTY 6 cut(s) 326, 653, 1658, 1815, 3535, 4155
AseI ATTAAT 1 cut(s) 2130
Asp700I GAANNNNTTC 2 cut(s) 657, 3766
AspA2I CCTAGG 1 cut(s) 3223
AspLEI GCGC 3 cut(s) 926, 1545, 3961
AspS9I GGNCC 5 cut(s) 432, 545, 1010, 3218, 3406
AsuC2I CCSGG 3 cut(s) 1779, 1780, 4161
AsuHPI GGTGA 7 cut(s) 719, 953, 1480, 2069, 2339, 2428, 4145
AvaI CYCGRG 3 cut(s) 1367, 1778, 2766
AvaII GGWCC 4 cut(s) 432, 545, 3218, 3406
AvrII CCTAGG 1 cut(s) 3223
AxyI CCTNAGG 1 cut(s) 556
BaeGI GKGCMC 1 cut(s) 3134
BaeI ACNNNNGTAYC 4 cut(s) 921, 954, 2400, 2433
BalI TGGCCA 2 cut(s) 867, 3972
BamHI GGATCC 1 cut(s) 1806
BanI GGYRCC 1 cut(s) 747
BanII GRGCYC 1 cut(s) 1024
BauI CACGAG 1 cut(s) 641
BbsI GAAGAC 1 cut(s) 2705
Bbv12I GWGCWC 4 cut(s) 442, 2260, 3134, 4263
BbvCI CCTCAGC 1 cut(s) 146
BccI CCATC 9 cut(s) 215, 280, 1090, 1461, 1930, 2145, 2671, 2957, 3943
BcgI CGANNNNNNTGC 4 cut(s) 401, 435, 802, 836
BciT130I CCWGG 8 cut(s) 398, 752, 1458, 2625, 2955, 3270, 3438, 3969
BciVI GTATCC 1 cut(s) 3860
BclI TGATCA 1 cut(s) 91
BcnI CCSGG 3 cut(s) 1779, 1780, 4161
BcoDI GTCTC 6 cut(s) 511, 719, 1145, 1688, 3335, 3609
BcuI ACTAGT 2 cut(s) 671, 2911
BfaI CTAG 8 cut(s) 672, 1446, 2141, 2175, 2912, 3066, 3224, 4044
BfmI CTRYAG 8 cut(s) 1136, 2184, 3003, 3333, 3391, 3702, 3714, 3801
BfrI CTTAAG 4 cut(s) 899, 1615, 2204, 4193
BfuAI ACCTGC 3 cut(s) 199, 756, 1891
BfuI GTATCC 1 cut(s) 3860
BlnI CCTAGG 1 cut(s) 3223
BlpI GCTNAGC 1 cut(s) 3422
Bme18I GGWCC 4 cut(s) 432, 545, 3218, 3406
BmeRI GACNNNNNGTC 1 cut(s) 2627
BmeT110I CYCGRG 3 cut(s) 1367, 1778, 2766
BmgT120I GGNCC 5 cut(s) 432, 545, 1010, 3218, 3406
BmiI GGNNCC 9 cut(s) 375, 433, 749, 1213, 1808, 2005, 3220, 3442, 3688
BmrI ACTGGG 2 cut(s) 1002, 4085
BmsI GCATC 9 cut(s) 409, 797, 826, 969, 1639, 1753, 1939, 3052, 4174
BmuI ACTGGG 2 cut(s) 1002, 4085
BoxI GACNNNNGTC 1 cut(s) 1121
BpiI GAAGAC 1 cut(s) 2705
BpmI CTGGAG 2 cut(s) 987, 3550
Bpu10I CCTNAGC 4 cut(s) 146, 341, 3792, 4007
Bpu1102I GCTNAGC 1 cut(s) 3422
BpuEI CTTGAG 3 cut(s) 1504, 2428, 4110
BpuMI CCSGG 3 cut(s) 1779, 1780, 4161
BsaAI YACGTR 1 cut(s) 3927
BsaBI GATNNNNATC 1 cut(s) 1583
BsaI GGTCTC 1 cut(s) 511
BsaJI CCNNGG 8 cut(s) 751, 1778, 2069, 2263, 3223, 3269, 3444, 3682
BsaWI WCCGGW 2 cut(s) 2413, 3555
BsaXI ACNNNNNCTCC 8 cut(s) 134, 164, 632, 662, 2395, 2425, 3189, 3219
Bsc4I CCNNNNNNNGG 8 cut(s) 557, 1030, 2168, 2189, 2206, 3053, 3437, 3877
Bse21I CCTNAGG 1 cut(s) 556
Bse3DI GCAATG 3 cut(s) 1959, 2121, 2295
Bse8I GATNNNNATC 1 cut(s) 1583
BseBI CCWGG 8 cut(s) 398, 752, 1458, 2625, 2955, 3270, 3438, 3969
BseDI CCNNGG 8 cut(s) 751, 1778, 2069, 2263, 3223, 3269, 3444, 3682
BseJI GATNNNNATC 1 cut(s) 1583
BseLI CCNNNNNNNGG 8 cut(s) 557, 1030, 2168, 2189, 2206, 3053, 3437, 3877
BseMI GCAATG 3 cut(s) 1959, 2121, 2295
BseRI GAGGAG 6 cut(s) 146, 149, 152, 155, 3210, 4253
BseSI GKGCMC 1 cut(s) 3134
BsgI GTGCAG 2 cut(s) 1128, 4185
Bsh1236I CGCG 1 cut(s) 723
BshFI GGCC 6 cut(s) 20, 867, 1012, 3057, 3117, 3972
BshNI GGYRCC 1 cut(s) 747
BsiHKAI GWGCWC 4 cut(s) 442, 2260, 3134, 4263
BsiHKCI CYCGRG 3 cut(s) 1367, 1778, 2766
BsiSI CCGG 5 cut(s) 21, 1779, 2414, 3556, 4160
BslFI GGGAC 3 cut(s) 359, 445, 1415
BslI CCNNNNNNNGG 8 cut(s) 557, 1030, 2168, 2189, 2206, 3053, 3437, 3877
BsmAI GTCTC 6 cut(s) 511, 719, 1145, 1688, 3335, 3609
BsmFI GGGAC 3 cut(s) 359, 445, 1415
BsmI GAATGC 4 cut(s) 104, 839, 2941, 4187
BsnI GGCC 6 cut(s) 20, 867, 1012, 3057, 3117, 3972
Bso31I GGTCTC 1 cut(s) 511
BsoBI CYCGRG 3 cut(s) 1367, 1778, 2766
Bsp1286I GDGCHC 5 cut(s) 442, 1024, 2260, 3134, 4263
Bsp1407I TGTACA 1 cut(s) 453
Bsp143I GATC 9 cut(s) 91, 694, 823, 1312, 1806, 1848, 2076, 2362, 3448
Bsp1720I GCTNAGC 1 cut(s) 3422
Bsp19I CCATGG 1 cut(s) 2069
BspANI GGCC 6 cut(s) 20, 867, 1012, 3057, 3117, 3972
BspFNI CGCG 1 cut(s) 723
BspHI TCATGA 3 cut(s) 213, 843, 3564
BspLI GGNNCC 9 cut(s) 375, 433, 749, 1213, 1808, 2005, 3220, 3442, 3688
BspMAI CTGCAG 3 cut(s) 1140, 3337, 3706
BspMI ACCTGC 3 cut(s) 199, 756, 1891
BspPI GGATC 6 cut(s) 818, 1320, 1801, 1814, 1856, 3456
BspQI GCTCTTC 1 cut(s) 1413
BspT107I GGYRCC 1 cut(s) 747
BspTI CTTAAG 4 cut(s) 899, 1615, 2204, 4193
BspTNI GGTCTC 1 cut(s) 511
BsrBI CCGCTC 1 cut(s) 166
BsrDI GCAATG 3 cut(s) 1959, 2121, 2295
BsrGI TGTACA 1 cut(s) 453
BssECI CCNNGG 8 cut(s) 751, 1778, 2069, 2263, 3223, 3269, 3444, 3682
BssMI GATC 9 cut(s) 91, 694, 823, 1312, 1806, 1848, 2076, 2362, 3448
BssNAI GTATAC 1 cut(s) 1558
BssSI CACGAG 1 cut(s) 641
BssT1I CCWWGG 4 cut(s) 2069, 2263, 3223, 3444
Bst1107I GTATAC 1 cut(s) 1558
Bst2BI CACGAG 1 cut(s) 641
Bst2UI CCWGG 8 cut(s) 398, 752, 1458, 2625, 2955, 3270, 3438, 3969
Bst6I CTCTTC 9 cut(s) 1413, 1508, 1955, 2280, 2473, 2555, 2981, 3849, 4271
BstAFI CTTAAG 4 cut(s) 899, 1615, 2204, 4193
BstAPI GCANNNNNTGC 5 cut(s) 1718, 1886, 3501, 3665, 4184
BstAUI TGTACA 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 3927
BstDSI CCRYGG 1 cut(s) 2069
BstENI CCTNNNNNAGG 3 cut(s) 555, 2204, 3051
BstFNI CGCG 1 cut(s) 723
BstHHI GCGC 3 cut(s) 926, 1545, 3961
BstKTI GATC 9 cut(s) 94, 697, 826, 1315, 1809, 1851, 2079, 2365, 3451
BstMAI GTCTC 6 cut(s) 511, 719, 1145, 1688, 3335, 3609
BstMBI GATC 9 cut(s) 91, 694, 823, 1312, 1806, 1848, 2076, 2362, 3448
BstNI CCWGG 8 cut(s) 398, 752, 1458, 2625, 2955, 3270, 3438, 3969
BstNSI RCATGY 2 cut(s) 85, 1515
BstPAI GACNNNNGTC 1 cut(s) 1121
BstSFI CTRYAG 8 cut(s) 1136, 2184, 3003, 3333, 3391, 3702, 3714, 3801
BstSLI GKGCMC 1 cut(s) 3134
BstUI CGCG 1 cut(s) 723
BstV2I GAAGAC 1 cut(s) 2705
BstX2I RGATCY 2 cut(s) 1806, 3448
BstXI CCANNNNNNTGG 3 cut(s) 859, 4065, 4098
BstYI RGATCY 2 cut(s) 1806, 3448
BstZ17I GTATAC 1 cut(s) 1558
Bsu36I CCTNAGG 1 cut(s) 556
BsuI GTATCC 1 cut(s) 3860
BsuRI GGCC 6 cut(s) 20, 867, 1012, 3057, 3117, 3972
BtgI CCRYGG 1 cut(s) 2069
BtgZI GCGATG 1 cut(s) 234
BtsI GCAGTG 3 cut(s) 864, 3330, 3711
BveI ACCTGC 3 cut(s) 199, 756, 1891
CaiI CAGNNNCTG 1 cut(s) 863
CciI TCATGA 3 cut(s) 213, 843, 3564
CfoI GCGC 3 cut(s) 926, 1545, 3961
Cfr13I GGNCC 5 cut(s) 432, 545, 1010, 3218, 3406
Cfr9I CCCGGG 1 cut(s) 1778
CseI GACGC 2 cut(s) 110, 2840
CsiI ACCWGGT 2 cut(s) 2623, 3436
CspCI CAANNNNNGTGG 2 cut(s) 3319, 3354
DpnI GATC 9 cut(s) 93, 696, 825, 1314, 1808, 1850, 2078, 2364, 3450
DpnII GATC 9 cut(s) 91, 694, 823, 1312, 1806, 1848, 2076, 2362, 3448
DraI TTTAAA 1 cut(s) 1333
DraIII CACNNNGTG 1 cut(s) 2327
DriI GACNNNNNGTC 1 cut(s) 2627
EaeI YGGCCR 4 cut(s) 18, 865, 3115, 3970
Eam1104I CTCTTC 9 cut(s) 1413, 1508, 1955, 2280, 2473, 2555, 2981, 3849, 4271
Eam1105I GACNNNNNGTC 1 cut(s) 2627
EarI CTCTTC 9 cut(s) 1413, 1508, 1955, 2280, 2473, 2555, 2981, 3849, 4271
Eco130I CCWWGG 4 cut(s) 2069, 2263, 3223, 3444
Eco147I AGGCCT 1 cut(s) 3057
Eco24I GRGCYC 1 cut(s) 1024
Eco31I GGTCTC 1 cut(s) 511
Eco32I GATATC 1 cut(s) 3157
Eco47I GGWCC 4 cut(s) 432, 545, 3218, 3406
Eco57I CTGAAG 3 cut(s) 1437, 2442, 2844
Eco81I CCTNAGG 1 cut(s) 556
Eco88I CYCGRG 3 cut(s) 1367, 1778, 2766
EcoNI CCTNNNNNAGG 3 cut(s) 555, 2204, 3051
EcoO109I RGGNCCY 1 cut(s) 3406
EcoRI GAATTC 2 cut(s) 1815, 3535
EcoRII CCWGG 8 cut(s) 396, 750, 1456, 2623, 2953, 3268, 3436, 3967
EcoRV GATATC 1 cut(s) 3157
EcoT14I CCWWGG 4 cut(s) 2069, 2263, 3223, 3444
EcoT22I ATGCAT 4 cut(s) 237, 424, 841, 4189
EcoT38I GRGCYC 1 cut(s) 1024
ErhI CCWWGG 4 cut(s) 2069, 2263, 3223, 3444
FalI AAGNNNNNCTT 8 cut(s) 1417, 1449, 1499, 1531, 2657, 2689, 3488, 3520
FaqI GGGAC 3 cut(s) 359, 445, 1415
FauI CCCGC 4 cut(s) 54, 120, 948, 3473
FauNDI CATATG 2 cut(s) 424, 1245
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 2 cut(s) 1557, 2226
FriOI GRGCYC 1 cut(s) 1024
FspBI CTAG 8 cut(s) 672, 1446, 2141, 2175, 2912, 3066, 3224, 4044
GlaI GCGC 3 cut(s) 925, 1544, 3960
GsuI CTGGAG 2 cut(s) 987, 3550
HaeIII GGCC 6 cut(s) 20, 867, 1012, 3057, 3117, 3972
HapII CCGG 5 cut(s) 21, 1779, 2414, 3556, 4160
HgaI GACGC 2 cut(s) 110, 2840
HhaI GCGC 3 cut(s) 926, 1545, 3961
Hin6I GCGC 3 cut(s) 924, 1543, 3959
HinP1I GCGC 3 cut(s) 924, 1543, 3959
HincII GTYRAC 2 cut(s) 310, 2530
HindII GTYRAC 2 cut(s) 310, 2530
HindIII AAGCTT 2 cut(s) 257, 3165
HpaI GTTAAC 1 cut(s) 2530
HpaII CCGG 5 cut(s) 21, 1779, 2414, 3556, 4160
HphI GGTGA 7 cut(s) 719, 953, 1480, 2069, 2339, 2428, 4145
Hpy166II GTNNAC 9 cut(s) 310, 1558, 2227, 2530, 2786, 3132, 3373, 3749, 4148
Hpy8I GTNNAC 9 cut(s) 310, 1558, 2227, 2530, 2786, 3132, 3373, 3749, 4148
HpyCH4IV ACGT 2 cut(s) 2286, 3926
HpySE526I ACGT 2 cut(s) 2286, 3926
HspAI GCGC 3 cut(s) 924, 1543, 3959
Ksp22I TGATCA 1 cut(s) 91
KspAI GTTAAC 1 cut(s) 2530
Kzo9I GATC 9 cut(s) 91, 694, 823, 1312, 1806, 1848, 2076, 2362, 3448
LguI GCTCTTC 1 cut(s) 1413
LmnI GCTCC 7 cut(s) 142, 2154, 2255, 3332, 3656, 3686, 4266
LweI GCATC 9 cut(s) 409, 797, 826, 969, 1639, 1753, 1939, 3052, 4174
MabI ACCWGGT 2 cut(s) 2623, 3436
MaeI CTAG 8 cut(s) 672, 1446, 2141, 2175, 2912, 3066, 3224, 4044
MaeII ACGT 2 cut(s) 2286, 3926
MalI GATC 9 cut(s) 93, 696, 825, 1314, 1808, 1850, 2078, 2364, 3450
MbiI CCGCTC 1 cut(s) 166
MboI GATC 9 cut(s) 91, 694, 823, 1312, 1806, 1848, 2076, 2362, 3448
MfeI CAATTG 3 cut(s) 1998, 3078, 3570
MflI RGATCY 2 cut(s) 1806, 3448
MhlI GDGCHC 5 cut(s) 442, 1024, 2260, 3134, 4263
MlsI TGGCCA 2 cut(s) 867, 3972
MluNI TGGCCA 2 cut(s) 867, 3972
MlyI GAGTC 8 cut(s) 526, 721, 765, 1437, 1844, 2572, 2658, 3337
MmeI TCCRAC 6 cut(s) 343, 470, 739, 1951, 2170, 2926
Mox20I TGGCCA 2 cut(s) 867, 3972
Mph1103I ATGCAT 4 cut(s) 237, 424, 841, 4189
MroXI GAANNNNTTC 2 cut(s) 657, 3766
MscI TGGCCA 2 cut(s) 867, 3972
MslI CAYNNNNRTG 8 cut(s) 705, 857, 1118, 1458, 3311, 3546, 3914, 3992
Msp20I TGGCCA 2 cut(s) 867, 3972
MspA1I CMGCKG 4 cut(s) 1967, 2383, 2983, 3671
MspCI CTTAAG 4 cut(s) 899, 1615, 2204, 4193
MspI CCGG 5 cut(s) 21, 1779, 2414, 3556, 4160
MunI CAATTG 3 cut(s) 1998, 3078, 3570
Mva1269I GAATGC 4 cut(s) 104, 839, 2941, 4187
MvaI CCWGG 8 cut(s) 398, 752, 1458, 2625, 2955, 3270, 3438, 3969
MvnI CGCG 1 cut(s) 723
NciI CCSGG 3 cut(s) 1779, 1780, 4161
NcoI CCATGG 1 cut(s) 2069
NdeI CATATG 2 cut(s) 424, 1245
NdeII GATC 9 cut(s) 91, 694, 823, 1312, 1806, 1848, 2076, 2362, 3448
NlaIV GGNNCC 9 cut(s) 375, 433, 749, 1213, 1808, 2005, 3220, 3442, 3688
NmuCI GTSAC 4 cut(s) 638, 1217, 2057, 2812
NsiI ATGCAT 4 cut(s) 237, 424, 841, 4189
NspI RCATGY 2 cut(s) 85, 1515
OliI CACNNNNGTG 2 cut(s) 705, 857
PaeI GCATGC 1 cut(s) 1515
PaeR7I CTCGAG 1 cut(s) 2766
PagI TCATGA 3 cut(s) 213, 843, 3564
PaqCI CACCTGC 1 cut(s) 1891
PceI AGGCCT 1 cut(s) 3057
PciI ACATGT 1 cut(s) 81
PciSI GCTCTTC 1 cut(s) 1413
PcsI WCGNNNNNNNCGW 1 cut(s) 648
PctI GAATGC 4 cut(s) 104, 839, 2941, 4187
PdmI GAANNNNTTC 2 cut(s) 657, 3766
PfeI GAWTC 7 cut(s) 366, 393, 1339, 2330, 2471, 2572, 2825
PfoI TCCNGGA 2 cut(s) 396, 2953
PleI GAGTC 8 cut(s) 526, 721, 764, 1436, 1843, 2571, 2657, 3337
PpsI GAGTC 8 cut(s) 526, 721, 764, 1436, 1843, 2571, 2657, 3337
Ppu21I YACGTR 1 cut(s) 3927
PpuMI RGGWCCY 1 cut(s) 3406
PscI ACATGT 1 cut(s) 81
PshAI GACNNNNGTC 1 cut(s) 1121
PshBI ATTAAT 1 cut(s) 2130
PsiI TTATAA 1 cut(s) 4140
Psp1406I AACGTT 1 cut(s) 2286
Psp5II RGGWCCY 1 cut(s) 3406
Psp6I CCWGG 8 cut(s) 396, 750, 1456, 2623, 2953, 3268, 3436, 3967
PspGI CCWGG 8 cut(s) 396, 750, 1456, 2623, 2953, 3268, 3436, 3967
PspN4I GGNNCC 9 cut(s) 375, 433, 749, 1213, 1808, 2005, 3220, 3442, 3688
PspPI GGNCC 5 cut(s) 432, 545, 1010, 3218, 3406
PspPPI RGGWCCY 1 cut(s) 3406
PspXI VCTCGAGB 1 cut(s) 2766
PstI CTGCAG 3 cut(s) 1140, 3337, 3706
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 2 cut(s) 1806, 3448
PvuII CAGCTG 2 cut(s) 1967, 2383
RseI CAYNNNNRTG 8 cut(s) 705, 857, 1118, 1458, 3311, 3546, 3914, 3992
SapI GCTCTTC 1 cut(s) 1413
Sau3AI GATC 9 cut(s) 91, 694, 823, 1312, 1806, 1848, 2076, 2362, 3448
Sau96I GGNCC 5 cut(s) 432, 545, 1010, 3218, 3406
SchI GAGTC 8 cut(s) 526, 721, 765, 1437, 1844, 2572, 2658, 3337
SduI GDGCHC 5 cut(s) 442, 1024, 2260, 3134, 4263
SexAI ACCWGGT 2 cut(s) 2623, 3436
SfaNI GCATC 9 cut(s) 409, 797, 826, 969, 1639, 1753, 1939, 3052, 4174
SfcI CTRYAG 8 cut(s) 1136, 2184, 3003, 3333, 3391, 3702, 3714, 3801
Sfr274I CTCGAG 1 cut(s) 2766
SinI GGWCC 4 cut(s) 432, 545, 3218, 3406
SlaI CTCGAG 1 cut(s) 2766
SmaI CCCGGG 1 cut(s) 1780
SmiMI CAYNNNNRTG 8 cut(s) 705, 857, 1118, 1458, 3311, 3546, 3914, 3992
SmlI CTYRAG 8 cut(s) 899, 1519, 1615, 2204, 2443, 2766, 4125, 4193
SmoI CTYRAG 8 cut(s) 899, 1519, 1615, 2204, 2443, 2766, 4125, 4193
SpeI ACTAGT 2 cut(s) 671, 2911
SphI GCATGC 1 cut(s) 1515
SseBI AGGCCT 1 cut(s) 3057
SspI AATATT 1 cut(s) 2234
SspMI CTAG 8 cut(s) 672, 1446, 2141, 2175, 2912, 3066, 3224, 4044
StuI AGGCCT 1 cut(s) 3057
StyI CCWWGG 4 cut(s) 2069, 2263, 3223, 3444
TaiI ACGT 2 cut(s) 2289, 3929
TaqI TCGA 6 cut(s) 369, 411, 822, 2476, 2767, 4152
TatI WGTACW 2 cut(s) 453, 1083
TauI GCSGC 4 cut(s) 8, 11, 169, 3671
TfiI GAWTC 7 cut(s) 366, 393, 1339, 2330, 2471, 2572, 2825
TseFI GTSAC 4 cut(s) 638, 1217, 2057, 2812
Tsp45I GTSAC 4 cut(s) 638, 1217, 2057, 2812
TspGWI ACGGA 3 cut(s) 1351, 1637, 1943
TspMI CCCGGG 1 cut(s) 1778
Vha464I CTTAAG 4 cut(s) 899, 1615, 2204, 4193
VneI GTGCAC 1 cut(s) 3130
VpaK11BI GGWCC 4 cut(s) 432, 545, 3218, 3406
VspI ATTAAT 1 cut(s) 2130
XagI CCTNNNNNAGG 3 cut(s) 555, 2204, 3051
XapI RAATTY 6 cut(s) 326, 653, 1658, 1815, 3535, 4155
XbaI TCTAGA 1 cut(s) 2140
XceI RCATGY 2 cut(s) 85, 1515
XcmI CCANNNNNNNNNTGG 4 cut(s) 1828, 2076, 2186, 3034
XhoI CTCGAG 1 cut(s) 2766
XmaI CCCGGG 1 cut(s) 1778
XmaJI CCTAGG 1 cut(s) 3223
XmiI GTMKAC 2 cut(s) 1557, 2226
XmnI GAANNNNTTC 2 cut(s) 657, 3766
XspI CTAG 8 cut(s) 672, 1446, 2141, 2175, 2912, 3066, 3224, 4044
Zsp2I ATGCAT 4 cut(s) 237, 424, 841, 4189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.