Rroxscaffold_1G00025330

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
31831188 .. 31838497
7310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025330.1

Sequence Viewer

Length: 4203 bp
ATGGCCGCGGCATTGGCCGGAGAAGACTTAATGATGAGGCAGTCGAGCAGCCGGAGCAGCAGGAGCAGCTGGCGGTCGACGAGTGTCCGGGAAATGTGGAACGCGCCGGACGTGTTCCAGCGGAGCGGGCGGCAGCAGACGGTGGATGAGGAGGAGGAGCTCAAGTGGGCCGCCATCGAGCGGTTGCCGACTTATGATAGGATGAGGAGAGGCATGTTGAGGAATGTTATGAGCAATGGGAGGGTTGTAAATGAAGAAGTTGATGTTGCGAATCTTGGGGATCAAGATAAGAGGCAGTTGATGGAGAGCATACTCAAGGTTGTTGAGGACGATAATGAGAGATTCTTGCAGAGACTCAGAGCCAGAAATGACAGAGTTGGGATTGACATTCCTAGAGTTGAAGTTAGATACGAGAACATTTCCATAGAGGGAGATGCATTTGTAGGAACCAGAGCACTTCCAACGCTGTGGAATTCCACCTTAAACTCACTGGAGGCTTTAATTGGATTGGTTGGACTCTCACCGTCGAAGAAAAGAGTTGTCAAGATACTTCAAGATGTGAGCGGTATCGTGAAACCATCGAGGATGACACTACTTCTTGGACCTCCTGCATCCGGAAAAACAACACTGCTAAAAGCACTTGCTGGCAAACTTGATGAAGATCTGAGGGTAAATGGGAAAGTAACCTACTGTGGCCATGAATTTAAGGAATTTGTTCCTCAGAGGACCTCTGCTTACATTAGTCAGCATGATCTGCACTATGGTGAGATGACAGTTCGTGAAACATTGGACTTCTCCGGACGTTGCCTTGGAGTTGGAACCAGGTACGATATGCTGGTAGAGTTGTCTAGAAGGGAGAAAGATTCGGGTATCAAACCAGATGCTGAGATTGATGCATTCATGAAAGCCACATCCATGTCAGGCCAGGAAACTAGTTTGATCACAGATTACGTTCTCAAGATACTTGGGTTAGATATCTGTGCTGATATAATGGTGGGAGATGACATGAGGAGAGGAATATCAGGTGGACAGAAGAAACGTGTAACTACCGGAGAAATGTTGGTTGGACCAGCTAAAGCATTTTTCATGGACGAAATATCAACGGGGCTGGACAGTTCCACGACCTTCCAGATTGTCAAATTCATGAGGCAGATGGTTCATATTATGGATGTGACAATGGTCATCTCTCTCTTGCAGCCTGCACCTGAGACATATGACCTTTTCGATGACATTATCCTTCTTTCTGAGGGACAGATTGTCTACCAAGGCCCCCGTGATAATGTTCTTGAATTCTTTGAGTACATGGGATTCAAATGCCCAGACAGAAAAGGTGTTGCAGATTTTTTGCAAGAAGTGACCTCAAAGAAGGACCAAGAACAGTACTGGTTTAAGAAGAACCAACCTTACAGATATGTTTCAGTACCTGATTTTGCACGAGCTTTCACCTCTTTCCATGTTGGCCAACGGCTCGTTCAAGAACTAAGAGTTCCATATGACAAAAGAACTGCCCATCCGGCTGCCTTGGTGAAGGAAAAGTATGGAATATCCAATATGGAGCTCTTTAAGGCATGCTTTGCAAGGGAATGGCTGCTGATGAAGCGAAACTCTTTTGTTCTCATCAATGTCATGTTTAATGGAATGGCGGAACTTGCAATGACAGTATTCAGGCTTCCTGTGTACTTTAAACAAAGGGATGCCTTGTTCTACCCTGGCTGGGCTTTTGGATTGCCTATTTGGCTAACCAGAATTCCAATTTCATTGATGGAATCTGCAATCTGGATCATCTTTACATACTACACCATTGGATTTGCACCTGCTGCCAGTCGGTTTTTCAAGCAGTTCTTGGCTTTCTTTGGTATACATCAGATGGCACTTTCCCTTTTCCGTTTTATTGCAGCACTTGGAAGAACAGAGGTTGTTGCAAACACCATTGGTTCATTTACATTGCTAATGGTGTTCGTCCTTGGAGGTTTTATAGTTGCTAAAGATGACATTGAGTCATGGATGATATGGGGCTACTATGTTTCACCTATGATGTATGGCCAAAATGCCATTGCTATCAATGAATTTCTGGATAAAAGATGGAGCGCTCCTCTCGTCAATCAAAGTGAACCCACAGTCGGGAAGCTACTTCTCAAGCAAAGAGGCCTTTATACTGAAGAATATTGGTATTGGATTTGTATCGGAGCGCTTTTTGGCTTCTCTCTTCTCTTCAATGTTCTTTTCATCGCAGCACTGACCTTCTTAAATCCTCTTGGGGATACTAAAACTCTAATTGAAACTGATGACTCGCAAAGCAATAAGAAGCGACGATCCAATCCAGAAGGTACTGATATGCAAGTGAGAAATGGTCCAGCCAAAAAAGGAATGGTTTTGCCATTCCAGCCCTTGTCACTTGCTTTTAACCATGTGAACTACTACGTGGATATGCCTGCTGAAATGAAGACTCAAGGGGTTGAAGAGACCAGACTACAACTCCTACGTGATATTAGTGGTGCATTTAGGCCAGGTGTTTTGACTGCATTGGTTGGTGTCAGTGGTGCCGGAAAGACTACCCTAATGGATGTGTTAGCTGGAAGAAAGACAGGCGGGTACATTGAAGGAAGTATTACAATCTCTGGTTACCCAAAGAATCAAGCCACATTTGCTAGGGTCAGCGGTTACTGTGAACAAAATGACATTCATTCACCATATGTCACTGTTTATGAATCTCTCCTATACTCAGCCTGGCTGCGTCTTTCTAAAGATGTCAAGAAAGAAACACGGAAGATGTTTGTCGATGAGGTTATGGACTTGGTTGAGCTCAATCCTTTGAGGAATGCTTTAGTTGGACTTCCAGGAGTTGATGGGCTCTCAACTGAGCAAAGAAAGAGGCTCACCATTGCTGTGGAATTGGTTGCAAATCCTTCCATCATCTTTATGGATGAGCCAACCTCAGGTCTTGATGCTAGAGCAGCCGCAATTGTTATGCGTACTGTAAGAAACACAGTTGATACAGGACGTACCGTTGTTTGCACGATTCACCAACCTAGCATTGACATTTTTGAAGCTTTTGATGAGCTTTTCTTAATGAAAAGAGGAGGACAAGTGACTTATGCTGGGCCTCTAGGTCGCCAATCTCACAAGCTTGTTGAATATTTTGAGGCTATTCCAGGGGTTACCAAGATCAAAGAGGGTTACAATCCTGCTACATGGATGTTGGAGGTCAGCTCTGCTGCGGTTGAGACCCAACTAAACATCGACTTCGCAGAGATATATGCAAACTCAGAACTCTACAAGAGAAATCAGGACCTTATCAAGGAACTAAGCACACCTCAACCAGGGACCAAGGACCTTTACTTCCCCACCCAGTACTCTCAAACCTTTTTAACTCAGTGCAAGGCTTGCTTCTGGAAACAGCACTGGTCATACTGGAGGAACTCACGGTACAACGCCATTAGGTTTTTCATGACTGTTTGCATTGGCATATTATTCGGTGTTATCTTCTGGAGCAAAGGAGACCAAATAAACAAACAACAAGACCTGATCAATCTTTTGGGAGCTACCTATGCTGCTGTTCTTTTCCTCGGAGCTAGCAATGCCTCTGCCGTGCAATCTGTAGTGGCAGTTGAGCGAACAGTTTTCTACCGTGAAAGAGCTGCAGGAATGTACTCAGAGTTGCCTTATGCATTTGCTCAGGTGGCTATTGAGACGATTTACGTTGCAATCCAAACCTTTGTGTATTCCTGTCTTCTGTATTCTATGATCGGATACAACTGGAAGGTGGAGAAATTTTTGTACTTCTACTACTTCATTTTCATGTGCTTTACCTACTTCTCAATGTACGGGATGATGGTGGTTGCCCTAACTCCTGGCCATCAAATTGCTGCAATTGTCATGTCTTTCTTCATGAGCTTCTGGAACTTGTTCTCTGGTTTCCTCATCCCTAGACCGCTTATCCCCATCTGGTGGAGGTGGTATTACTGGGGTTCTCCAGTTGCTTGGACCATCTACGGCATCTTCGGATCTCAAGTTGGTGACTTGAAGAAGGAGATCGACTTGCCTACCGGAGGAAAACAAGCAGTGAATGTTTTCCTCAAGGAGTATTTGGGTTATGACTATGACTTCCTCATTCCTGTAGTGGTTGCTCATGTTGGTTGGGTCCTCCTCTTCTTCTTCGTCTTTGCCTACGGTATCAAGTACCTTAACTTCCAAAGGAGATAA

Protein Analysis

1400

Amino Acids

159.3

Weight (kDa)

8.42

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 110 - 158 9.2e-07 ABC-transporter N-terminal
ABC_tran PF00005 184 - 365 1.1e-13 ABC transporter
ABC2_membrane PF01061 537 - 690 4.8e-33 ABC-2 type transporter
PDR_assoc PF08370 695 - 759 5.8e-26 Plant PDR ABC transporter associated
ABC_tran PF00005 827 - 979 5.4e-20 ABC transporter
ABC2_membrane PF01061 1124 - 1336 4.8e-55 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1822
Acc36I ACCTGC 1 cut(s) 1822
AccB1I GGYRCC 1 cut(s) 2540
AccB7I CCANNNNNTGG 1 cut(s) 3948
AccBSI CCGCTC 3 cut(s) 126, 181, 564
AccI GTMKAC 3 cut(s) 77, 1260, 1858
AccII CGCG 2 cut(s) 8, 104
AccIII TCCGGA 2 cut(s) 614, 797
AclWI GGATC 4 cut(s) 288, 1787, 2307, 4012
AcoI YGGCCR 6 cut(s) 3, 15, 694, 1459, 2041, 3853
AcsI RAATTY 8 cut(s) 472, 701, 710, 1139, 1289, 1746, 2066, 3770
AcuI CTGAAG 1 cut(s) 2178
AfeI AGCGCT 2 cut(s) 2089, 2190
AflIII ACRYGT 2 cut(s) 111, 1039
AhdI GACNNNNNGTC 2 cut(s) 1256, 1996
AhlI ACTAGT 1 cut(s) 932
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 9 cut(s) 821, 924, 1708, 2506, 2726, 2836, 3151, 3319, 3850
AjuI GAANNNNNNNTTGG 4 cut(s) 1047, 1079, 1455, 1487
AleI CACNNNNGTG 1 cut(s) 762
AloI GAACNNNNNNTCC 4 cut(s) 1495, 1527, 1685, 1717
Alw21I GWGCWC 4 cut(s) 162, 457, 1560, 2805
Alw26I GTCTC 6 cut(s) 346, 1202, 2456, 3218, 3492, 3683
AlwI GGATC 4 cut(s) 288, 1787, 2307, 4012
AlwNI CAGNNNCTG 2 cut(s) 884, 1424
Aor13HI TCCGGA 2 cut(s) 614, 797
Aor51HI AGCGCT 2 cut(s) 2089, 2190
ApoI RAATTY 8 cut(s) 472, 701, 710, 1139, 1289, 1746, 2066, 3770
Asp700I GAANNNNTTC 3 cut(s) 714, 3905, 4070
AspLEI GCGC 3 cut(s) 106, 2090, 2191
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 9 cut(s) 513, 776, 1435, 1537, 2019, 2679, 2869, 3014, 4028
AsuNHI GCTAGC 1 cut(s) 3572
AxyI CCTNAGG 1 cut(s) 2935
BaeI ACNNNNGTAYC 2 cut(s) 953, 986
BalI TGGCCA 4 cut(s) 696, 1461, 2043, 3855
BanI GGYRCC 1 cut(s) 2540
BanII GRGCYC 4 cut(s) 162, 1560, 2805, 2853
BarI GAAGNNNNNNTAC 3 cut(s) 1653, 1685, 4172
BauI CACGAG 1 cut(s) 1434
BbsI GAAGAC 3 cut(s) 30, 2450, 3722
Bbv12I GWGCWC 4 cut(s) 162, 457, 1560, 2805
BceAI ACGGC 3 cut(s) 1481, 3572, 4009
BcgI CGANNNNNNTGC 2 cut(s) 3454, 3488
BciT130I CCWGG 9 cut(s) 823, 926, 1710, 2508, 2728, 2838, 3153, 3321, 3852
BciVI GTATCC 2 cut(s) 2254, 3743
BclI TGATCA 2 cut(s) 939, 3525
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 6 cut(s) 346, 1202, 2456, 3218, 3492, 3683
BcuI ACTAGT 1 cut(s) 932
BfaI CTAG 9 cut(s) 393, 849, 933, 2649, 2949, 3030, 3107, 3573, 3927
BfmI CTRYAG 3 cut(s) 3597, 3639, 4116
BfoI RGCGCY 2 cut(s) 2091, 2192
BfuAI ACCTGC 1 cut(s) 1822
BfuI GTATCC 2 cut(s) 2254, 3743
BglI GCCNNNNNGGC 2 cut(s) 1514, 1735
BglII AGATCT 1 cut(s) 661
BmcAI AGTACT 2 cut(s) 1382, 3353
BmeRI GACNNNNNGTC 2 cut(s) 1256, 1996
BmgBI CACGTC 1 cut(s) 112
BmiI GGNNCC 6 cut(s) 448, 820, 1270, 2542, 3325, 4142
BmrI ACTGGG 2 cut(s) 3343, 3973
BmsI GCATC 7 cut(s) 424, 620, 871, 883, 1684, 2935, 4005
BmtI GCTAGC 1 cut(s) 3576
BmuI ACTGGG 2 cut(s) 3343, 3973
BoxI GACNNNNGTC 2 cut(s) 83, 1178
BpiI GAAGAC 3 cut(s) 30, 2450, 3722
BplI GAGNNNNNCTC 6 cut(s) 2077, 2109, 2918, 2950, 3194, 3226
BpmI CTGGAG 4 cut(s) 512, 3433, 3508, 3957
Bpu10I CCTNAGC 1 cut(s) 3675
BpuEI CTTGAG 7 cut(s) 146, 299, 941, 2120, 2433, 3993, 4061
BpuMI CCSGG 1 cut(s) 89
BsaAI YACGTR 2 cut(s) 2422, 2483
BsaBI GATNNNNATC 2 cut(s) 660, 2180
BsaI GGTCTC 3 cut(s) 2456, 3218, 3492
BsaWI WCCGGW 4 cut(s) 614, 797, 1049, 4046
BsaXI ACNNNNNCTCC 6 cut(s) 149, 179, 2460, 2490, 3072, 3102
Bse1I ACTGG 9 cut(s) 495, 1388, 1821, 3349, 3407, 3416, 3761, 3968, 3974
Bse21I CCTNAGG 1 cut(s) 2935
Bse3DI GCAATG 6 cut(s) 241, 1659, 1943, 2052, 2880, 3583
Bse8I GATNNNNATC 2 cut(s) 660, 2180
BseAI TCCGGA 2 cut(s) 614, 797
BseBI CCWGG 9 cut(s) 823, 926, 1710, 2508, 2728, 2838, 3153, 3321, 3852
BseJI GATNNNNATC 2 cut(s) 660, 2180
BseMI GCAATG 6 cut(s) 241, 1659, 1943, 2052, 2880, 3583
BseNI ACTGG 9 cut(s) 495, 1388, 1821, 3349, 3407, 3416, 3761, 3968, 3974
BseRI GAGGAG 8 cut(s) 164, 167, 170, 220, 1024, 2082, 3093, 4136
BseYI CCCAGC 2 cut(s) 1713, 3098
BsgI GTGCAG 2 cut(s) 740, 1185
Bsh1236I CGCG 2 cut(s) 8, 104
Bsh1285I CGRYCG 1 cut(s) 77
BshNI GGYRCC 1 cut(s) 2540
BsiEI CGRYCG 1 cut(s) 77
BsiHKAI GWGCWC 4 cut(s) 162, 457, 1560, 2805
BslFI GGGAC 2 cut(s) 1263, 3337
BsmAI GTCTC 6 cut(s) 346, 1202, 2456, 3218, 3492, 3683
BsmBI CGTCTC 1 cut(s) 3683
BsmFI GGGAC 2 cut(s) 1263, 3337
BsmI GAATGC 2 cut(s) 896, 2824
Bso31I GGTCTC 3 cut(s) 2456, 3218, 3492
Bsp1286I GDGCHC 5 cut(s) 162, 457, 1560, 2805, 2853
Bsp13I TCCGGA 2 cut(s) 614, 797
BspEI TCCGGA 2 cut(s) 614, 797
BspFNI CGCG 2 cut(s) 8, 104
BspHI TCATGA 4 cut(s) 900, 1143, 3447, 3888
BspLI GGNNCC 6 cut(s) 448, 820, 1270, 2542, 3325, 4142
BspMAI CTGCAG 1 cut(s) 3643
BspMI ACCTGC 1 cut(s) 1822
BspOI GCTAGC 1 cut(s) 3576
BspPI GGATC 4 cut(s) 288, 1787, 2307, 4012
BspT107I GGYRCC 1 cut(s) 2540
BspTNI GGTCTC 3 cut(s) 2456, 3218, 3492
BsrBI CCGCTC 3 cut(s) 126, 181, 564
BsrDI GCAATG 6 cut(s) 241, 1659, 1943, 2052, 2880, 3583
BsrI ACTGG 9 cut(s) 495, 1388, 1821, 3349, 3407, 3416, 3761, 3968, 3974
BssNAI GTATAC 1 cut(s) 1859
BssSI CACGAG 1 cut(s) 1434
BssT1I CCWWGG 5 cut(s) 808, 1264, 1521, 1963, 3327
Bst1107I GTATAC 1 cut(s) 1859
Bst2BI CACGAG 1 cut(s) 1434
Bst2UI CCWGG 9 cut(s) 823, 926, 1710, 2508, 2728, 2838, 3153, 3321, 3852
Bst6I CTCTTC 4 cut(s) 2211, 2216, 2454, 4154
BstAPI GCANNNNNTGC 4 cut(s) 754, 1574, 1817, 3384
BstBAI YACGTR 2 cut(s) 2422, 2483
BstC8I GCNNGC 8 cut(s) 71, 128, 646, 1200, 1570, 2433, 3385, 3574
BstDSI CCRYGG 1 cut(s) 6
BstEII GGTNACC 2 cut(s) 2621, 3157
BstENI CCTNNNNNAGG 3 cut(s) 3296, 3318, 4047
BstFNI CGCG 2 cut(s) 8, 104
BstH2I RGCGCY 2 cut(s) 2091, 2192
BstHHI GCGC 3 cut(s) 106, 2090, 2191
BstMAI GTCTC 6 cut(s) 346, 1202, 2456, 3218, 3492, 3683
BstMCI CGRYCG 1 cut(s) 77
BstNI CCWGG 9 cut(s) 823, 926, 1710, 2508, 2728, 2838, 3153, 3321, 3852
BstNSI RCATGY 2 cut(s) 217, 1572
BstPAI GACNNNNGTC 2 cut(s) 83, 1178
BstPI GGTNACC 2 cut(s) 2621, 3157
BstSFI CTRYAG 3 cut(s) 3597, 3639, 4116
BstUI CGCG 2 cut(s) 8, 104
BstV2I GAAGAC 3 cut(s) 30, 2450, 3722
BstX2I RGATCY 2 cut(s) 661, 4004
BstXI CCANNNNNNTGG 3 cut(s) 468, 2887, 3981
BstYI RGATCY 2 cut(s) 661, 4004
BstZ17I GTATAC 1 cut(s) 1859
Bsu36I CCTNAGG 1 cut(s) 2935
BsuI GTATCC 2 cut(s) 2254, 3743
BtgI CCRYGG 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 2212
BtrI CACGTC 1 cut(s) 112
BtsI GCAGTG 2 cut(s) 626, 4068
BtsIMutI CAGTG 8 cut(s) 488, 626, 2234, 2542, 2697, 3380, 3400, 4068
BveI ACCTGC 1 cut(s) 1822
Cac8I GCNNGC 8 cut(s) 71, 128, 646, 1200, 1570, 2433, 3385, 3574
CaiI CAGNNNCTG 2 cut(s) 884, 1424
CciI TCATGA 4 cut(s) 900, 1143, 3447, 3888
CfoI GCGC 3 cut(s) 106, 2090, 2191
Cfr42I CCGCGG 1 cut(s) 9
CseI GACGC 1 cut(s) 2723
CsiI ACCWGGT 1 cut(s) 821
DraI TTTAAA 1 cut(s) 1684
DriI GACNNNNNGTC 2 cut(s) 1256, 1996
EaeI YGGCCR 6 cut(s) 3, 15, 694, 1459, 2041, 3853
Eam1104I CTCTTC 4 cut(s) 2211, 2216, 2454, 4154
Eam1105I GACNNNNNGTC 2 cut(s) 1256, 1996
EarI CTCTTC 4 cut(s) 2211, 2216, 2454, 4154
EciI GGCGGA 1 cut(s) 1658
Ecl136II GAGCTC 3 cut(s) 160, 1558, 2803
Eco130I CCWWGG 5 cut(s) 808, 1264, 1521, 1963, 3327
Eco147I AGGCCT 1 cut(s) 2148
Eco24I GRGCYC 4 cut(s) 162, 1560, 2805, 2853
Eco31I GGTCTC 3 cut(s) 2456, 3218, 3492
Eco32I GATATC 1 cut(s) 976
Eco47III AGCGCT 2 cut(s) 2089, 2190
Eco53kI GAGCTC 3 cut(s) 160, 1558, 2803
Eco57I CTGAAG 1 cut(s) 2178
Eco81I CCTNAGG 1 cut(s) 2935
Eco91I GGTNACC 2 cut(s) 2621, 3157
EcoICRI GAGCTC 3 cut(s) 160, 1558, 2803
EcoNI CCTNNNNNAGG 3 cut(s) 3296, 3318, 4047
EcoO109I RGGNCCY 5 cut(s) 726, 1268, 3289, 3331, 4141
EcoO65I GGTNACC 2 cut(s) 2621, 3157
EcoRI GAATTC 3 cut(s) 472, 1289, 1746
EcoRII CCWGG 9 cut(s) 821, 924, 1708, 2506, 2726, 2836, 3151, 3319, 3850
EcoRV GATATC 1 cut(s) 976
EcoT14I CCWWGG 5 cut(s) 808, 1264, 1521, 1963, 3327
EcoT22I ATGCAT 3 cut(s) 439, 898, 3670
EcoT38I GRGCYC 4 cut(s) 162, 1560, 2805, 2853
ErhI CCWWGG 5 cut(s) 808, 1264, 1521, 1963, 3327
Esp3I CGTCTC 1 cut(s) 3683
FalI AAGNNNNNCTT 6 cut(s) 1556, 1588, 1826, 1858, 3371, 3403
FaqI GGGAC 2 cut(s) 1263, 3337
FauI CCCGC 2 cut(s) 119, 2582
FauNDI CATATG 3 cut(s) 1213, 1492, 2692
FbaI TGATCA 2 cut(s) 939, 3525
FblI GTMKAC 3 cut(s) 77, 1260, 1858
FriOI GRGCYC 4 cut(s) 162, 1560, 2805, 2853
FspBI CTAG 9 cut(s) 393, 849, 933, 2649, 2949, 3030, 3107, 3573, 3927
GlaI GCGC 3 cut(s) 105, 2089, 2190
GsaI CCCAGC 2 cut(s) 1717, 3102
GsuI CTGGAG 4 cut(s) 512, 3433, 3508, 3957
HaeII RGCGCY 2 cut(s) 2091, 2192
HgaI GACGC 1 cut(s) 2723
HhaI GCGC 3 cut(s) 106, 2090, 2191
Hin6I GCGC 3 cut(s) 104, 2088, 2189
HinP1I GCGC 3 cut(s) 104, 2088, 2189
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HindIII AAGCTT 2 cut(s) 3048, 3125
HphI GGTGA 9 cut(s) 513, 776, 1435, 1537, 2019, 2679, 2869, 3014, 4028
Hpy166II GTNNAC 8 cut(s) 78, 1028, 1261, 1678, 1859, 2111, 2413, 2669
Hpy8I GTNNAC 8 cut(s) 78, 1028, 1261, 1678, 1859, 2111, 2413, 2669
Hpy99I CGWCG 3 cut(s) 82, 529, 2313
HpyCH4IV ACGT 8 cut(s) 111, 802, 951, 1039, 2421, 2482, 3001, 3699
HpySE526I ACGT 8 cut(s) 111, 802, 951, 1039, 2421, 2482, 3001, 3699
HspAI GCGC 3 cut(s) 104, 2088, 2189
Kpn2I TCCGGA 2 cut(s) 614, 797
Ksp22I TGATCA 2 cut(s) 939, 3525
KspI CCGCGG 1 cut(s) 9
LweI GCATC 7 cut(s) 424, 620, 871, 883, 1684, 2935, 4005
MabI ACCWGGT 1 cut(s) 821
MaeI CTAG 9 cut(s) 393, 849, 933, 2649, 2949, 3030, 3107, 3573, 3927
MaeII ACGT 8 cut(s) 111, 802, 951, 1039, 2421, 2482, 3001, 3699
MbiI CCGCTC 3 cut(s) 126, 181, 564
MfeI CAATTG 2 cut(s) 2961, 3870
MflI RGATCY 2 cut(s) 661, 4004
MhlI GDGCHC 5 cut(s) 162, 457, 1560, 2805, 2853
MlsI TGGCCA 4 cut(s) 696, 1461, 2043, 3855
MluNI TGGCCA 4 cut(s) 696, 1461, 2043, 3855
MlyI GAGTC 5 cut(s) 348, 510, 2006, 2282, 2440
MmeI TCCRAC 6 cut(s) 485, 493, 796, 1045, 2809, 3180
Mox20I TGGCCA 4 cut(s) 696, 1461, 2043, 3855
Mph1103I ATGCAT 3 cut(s) 439, 898, 3670
MroI TCCGGA 2 cut(s) 614, 797
MroXI GAANNNNTTC 3 cut(s) 714, 3905, 4070
MscI TGGCCA 4 cut(s) 696, 1461, 2043, 3855
MslI CAYNNNNRTG 5 cut(s) 762, 914, 2885, 2918, 3797
Msp20I TGGCCA 4 cut(s) 696, 1461, 2043, 3855
MspA1I CMGCKG 4 cut(s) 8, 69, 121, 2658
MunI CAATTG 2 cut(s) 2961, 3870
Mva1269I GAATGC 2 cut(s) 896, 2824
MvaI CCWGG 9 cut(s) 823, 926, 1710, 2508, 2728, 2838, 3153, 3321, 3852
MvnI CGCG 2 cut(s) 8, 104
NciI CCSGG 1 cut(s) 89
NdeI CATATG 3 cut(s) 1213, 1492, 2692
NheI GCTAGC 1 cut(s) 3572
NlaIV GGNNCC 6 cut(s) 448, 820, 1270, 2542, 3325, 4142
NmuCI GTSAC 6 cut(s) 1171, 1354, 2391, 2695, 3088, 4016
NsiI ATGCAT 3 cut(s) 439, 898, 3670
NspI RCATGY 2 cut(s) 217, 1572
OliI CACNNNNGTG 1 cut(s) 762
PaeI GCATGC 1 cut(s) 1572
PagI TCATGA 4 cut(s) 900, 1143, 3447, 3888
PaqCI CACCTGC 1 cut(s) 1822
PceI AGGCCT 1 cut(s) 2148
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 2 cut(s) 896, 2824
PdmI GAANNNNTTC 3 cut(s) 714, 3905, 4070
PfeI GAWTC 8 cut(s) 271, 342, 863, 1308, 1766, 2632, 2708, 3019
PflMI CCANNNNNTGG 1 cut(s) 3948
PfoI TCCNGGA 2 cut(s) 87, 2836
PleI GAGTC 5 cut(s) 348, 510, 2005, 2282, 2440
PpsI GAGTC 5 cut(s) 348, 510, 2005, 2282, 2440
Ppu21I YACGTR 2 cut(s) 2422, 2483
PpuMI RGGWCCY 4 cut(s) 726, 3289, 3331, 4141
PshAI GACNNNNGTC 2 cut(s) 83, 1178
Psp124BI GAGCTC 3 cut(s) 162, 1560, 2805
Psp5II RGGWCCY 4 cut(s) 726, 3289, 3331, 4141
Psp6I CCWGG 9 cut(s) 821, 924, 1708, 2506, 2726, 2836, 3151, 3319, 3850
PspEI GGTNACC 2 cut(s) 2621, 3157
PspFI CCCAGC 2 cut(s) 1713, 3098
PspGI CCWGG 9 cut(s) 821, 924, 1708, 2506, 2726, 2836, 3151, 3319, 3850
PspN4I GGNNCC 6 cut(s) 448, 820, 1270, 2542, 3325, 4142
PspPPI RGGWCCY 4 cut(s) 726, 3289, 3331, 4141
PsrI GAACNNNNNNTAC 4 cut(s) 1388, 1420, 3410, 3442
PstI CTGCAG 1 cut(s) 3643
PstNI CAGNNNCTG 2 cut(s) 884, 1424
PsuI RGATCY 2 cut(s) 661, 4004
PvuII CAGCTG 1 cut(s) 69
RseI CAYNNNNRTG 5 cut(s) 762, 914, 2885, 2918, 3797
SacI GAGCTC 3 cut(s) 162, 1560, 2805
SacII CCGCGG 1 cut(s) 9
SalI GTCGAC 1 cut(s) 76
ScaI AGTACT 2 cut(s) 1382, 3353
SchI GAGTC 5 cut(s) 348, 510, 2006, 2282, 2440
SduI GDGCHC 5 cut(s) 162, 457, 1560, 2805, 2853
SexAI ACCWGGT 1 cut(s) 821
SfaNI GCATC 7 cut(s) 424, 620, 871, 883, 1684, 2935, 4005
SfcI CTRYAG 3 cut(s) 3597, 3639, 4116
Sfr303I CCGCGG 1 cut(s) 9
SgrBI CCGCGG 1 cut(s) 9
SmiMI CAYNNNNRTG 5 cut(s) 762, 914, 2885, 2918, 3797
SmlI CTYRAG 7 cut(s) 161, 314, 956, 2135, 2448, 4008, 4076
SmoI CTYRAG 7 cut(s) 161, 314, 956, 2135, 2448, 4008, 4076
SpeI ACTAGT 1 cut(s) 932
SphI GCATGC 1 cut(s) 1572
SseBI AGGCCT 1 cut(s) 2148
SspI AATATT 2 cut(s) 2165, 3137
SspMI CTAG 9 cut(s) 393, 849, 933, 2649, 2949, 3030, 3107, 3573, 3927
SstI GAGCTC 3 cut(s) 162, 1560, 2805
StuI AGGCCT 1 cut(s) 2148
StyI CCWWGG 5 cut(s) 808, 1264, 1521, 1963, 3327
TaiI ACGT 8 cut(s) 114, 805, 954, 1042, 2424, 2485, 3004, 3702
TaqI TCGA 9 cut(s) 44, 77, 177, 527, 581, 1224, 2778, 3240, 4035
TatI WGTACW 6 cut(s) 1299, 1380, 1677, 3351, 3648, 3777
TauI GCSGC 5 cut(s) 8, 11, 133, 173, 2960
TfiI GAWTC 8 cut(s) 271, 342, 863, 1308, 1766, 2632, 2708, 3019
TscAI CASTG 8 cut(s) 495, 633, 2241, 2542, 2704, 3380, 3407, 4068
TseFI GTSAC 6 cut(s) 1171, 1354, 2391, 2695, 3088, 4016
Tsp45I GTSAC 6 cut(s) 1171, 1354, 2391, 2695, 3088, 4016
TspGWI ACGGA 2 cut(s) 1874, 2779
TspRI CASTG 8 cut(s) 495, 633, 2241, 2542, 2704, 3380, 3407, 4068
Van91I CCANNNNNTGG 1 cut(s) 3948
XagI CCTNNNNNAGG 3 cut(s) 3296, 3318, 4047
XapI RAATTY 8 cut(s) 472, 701, 710, 1139, 1289, 1746, 2066, 3770
XbaI TCTAGA 1 cut(s) 848
XceI RCATGY 2 cut(s) 217, 1572
XcmI CCANNNNNNNNNTGG 2 cut(s) 2365, 2917
XmiI GTMKAC 3 cut(s) 77, 1260, 1858
XmnI GAANNNNTTC 3 cut(s) 714, 3905, 4070
XspI CTAG 9 cut(s) 393, 849, 933, 2649, 2949, 3030, 3107, 3573, 3927
ZrmI AGTACT 2 cut(s) 1382, 3353
Zsp2I ATGCAT 3 cut(s) 439, 898, 3670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.