Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000245

Physical Location & Seq

Genomic Coordinates Reverse (-)

20530606 .. 20532223

Gene Structure 1618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23779

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTATTCAGAGTTGCCTTATGCATTTGCTCAGGTGGCCATTGAGACGATTTATGTTGCTATACAAACCATCATTTATTCCCTTCTTTTATTTACCATGATCGGCTACGAATTTAAAGTTGAGAAATTTTTGTATTTCTACTACTTTATATTCATGTGTTTTACATACTTCTCAATGTATGGAATGATGGTGGTTGCCCCAACTCCTAGCCATCAAATCGCTGCAATTGTCATGGGCTTCTTCATGAGTTTCTGGAATTTGTTCTCCGGTTTCCTCGTCCCCAGACCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

97

Amino Acids

11.49

Weight (kDa)

6.52

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	1 - 96	4.6e-20	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66950 AT2G36380
fragaria_vesca	FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica	MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica	Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis	pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis	RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata	RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora	Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa	Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha	Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana	Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	3 cut(s)	110, 125, 256
Alw26I	GTCTC	1 cut(s)	38
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	3 cut(s)	110, 125, 256
Asp700I	GAANNNNTTC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	3 cut(s)	77, 181, 219
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	207
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	38
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	243
BssMI	GATC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	102
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	38
CciI	TCATGA	1 cut(s)	243
CviAII	CATG	4 cut(s)	97, 154, 232, 244
CviJI	RGCY	4 cut(s)	38, 105, 210, 237
CviKI_1	RGCY	4 cut(s)	38, 105, 210, 237
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
DraI	TTTAAA	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	4 cut(s)	100, 157, 235, 247
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	4 cut(s)	96, 153, 231, 243
Fnu4HI	GCNGC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	267
Hin1II	CATG	4 cut(s)	100, 157, 235, 247
HpaII	CCGG	1 cut(s)	267
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	244, 253
HpyAV	CCTTC	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	23, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	100, 157, 235, 247
Kzo9I	GATC	1 cut(s)	99
LpnPI	CCDG	3 cut(s)	17, 238, 280
Lsp1109I	GCAGC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	207
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	1 cut(s)	232
MfeI	CAATTG	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	4 cut(s)	110, 125, 225, 256
MluNI	TGGCCA	1 cut(s)	38
MnlI	CCTC	1 cut(s)	284
Mox20I	TGGCCA	1 cut(s)	38
Mph1103I	ATGCAT	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	4 cut(s)	100, 157, 235, 247
NsiI	ATGCAT	1 cut(s)	25
PagI	TCATGA	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	99
SetI	ASST	1 cut(s)	36
SgeI	CNNG	9 cut(s)	44, 109, 166, 219, 244, 256, 265, 279, 287
Sse9I	AATT	4 cut(s)	110, 125, 225, 256
SspMI	CTAG	1 cut(s)	207
TasI	AATT	4 cut(s)	110, 125, 225, 256
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	142, 232
XapI	RAATTY	3 cut(s)	110, 125, 256
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.