Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000245

Physical Location & Seq

Genomic Coordinates Forward (+)

32072173 .. 32073015

Gene Structure 843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56735

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAAGGTGGCCATTGAGACGATTTATGTTGCTATACAAACCATCATTATTTATTCCCTTCTTTTATTTACCATGATCGGCTACGAATTTAAAGTTGAGAAATTTTTGTATTTCTACCACTTTATATTCATGTGTTTTACGTACTTCTCAATGTATGGAATGATGGTGGTTGCCCTAACTCCTGGCCATCAAATCGCTGCAATTGTCATGGGCTTCTTCATGAGTTTCTGGAATTTGTTCTCCGGTTTCCTGGTCCCCAGACCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

89

Amino Acids

10.52

Weight (kDa)

8.79

Isoelectric Point (pI)

23.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	2 - 88	1.7e-15	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66950 AT2G36380
fragaria_vesca	FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica	MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica	Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis	pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis	RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata	RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora	Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa	Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha	Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana	Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	9, 184
AcsI	RAATTY	3 cut(s)	86, 101, 232
AfaI	GTAC	1 cut(s)	143
AjnI	CCWGG	2 cut(s)	181, 249
Alw26I	GTCTC	1 cut(s)	11
AoxI	GGCC	2 cut(s)	9, 184
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	3 cut(s)	86, 101, 232
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	253
BalI	TGGCCA	2 cut(s)	11, 186
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	3 cut(s)	50, 157, 195
BciT130I	CCWGG	2 cut(s)	183, 251
BcoDI	GTCTC	1 cut(s)	11
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	2 cut(s)	183, 251
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	2 cut(s)	183, 251
BsaAI	YACGTR	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	242
BseBI	CCWGG	2 cut(s)	183, 251
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	2 cut(s)	11, 186
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	11
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	2 cut(s)	11, 186
Bsp143I	GATC	1 cut(s)	75
BspANI	GGCC	2 cut(s)	11, 186
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	255
BssMI	GATC	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	183, 251
BstBAI	YACGTR	1 cut(s)	141
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	75
BstNI	CCWGG	2 cut(s)	183, 251
BstSCI	CCNGG	2 cut(s)	181, 249
BstSNI	TACGTA	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	11, 186
CciI	TCATGA	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	4 cut(s)	73, 130, 208, 220
CviJI	RGCY	4 cut(s)	11, 81, 186, 213
CviKI_1	RGCY	4 cut(s)	11, 81, 186, 213
CviQI	GTAC	1 cut(s)	142
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
DraI	TTTAAA	1 cut(s)	91
EaeI	YGGCCR	2 cut(s)	9, 184
Eco105I	TACGTA	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	181, 249
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	4 cut(s)	76, 133, 211, 223
FaiI	YATR	8 cut(s)	27, 35, 74, 125, 131, 156, 209, 221
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	4 cut(s)	72, 129, 207, 219
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	11, 186
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	4 cut(s)	76, 133, 211, 223
HpaII	CCGG	1 cut(s)	243
Hpy188III	TCNNGA	2 cut(s)	220, 229
HpyAV	CCTTC	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	4 cut(s)	76, 133, 211, 223
Kzo9I	GATC	1 cut(s)	75
LpnPI	CCDG	6 cut(s)	168, 195, 214, 236, 256, 263
Lsp1109I	GCAGC	1 cut(s)	184
MaeII	ACGT	1 cut(s)	140
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	1 cut(s)	208
MfeI	CAATTG	1 cut(s)	201
MlsI	TGGCCA	2 cut(s)	11, 186
MluCI	AATT	4 cut(s)	86, 101, 201, 232
MluNI	TGGCCA	2 cut(s)	11, 186
Mox20I	TGGCCA	2 cut(s)	11, 186
MroXI	GAANNNNTTC	1 cut(s)	236
MscI	TGGCCA	2 cut(s)	11, 186
MseI	TTAA	1 cut(s)	90
Msp20I	TGGCCA	2 cut(s)	11, 186
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	183, 251
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	2 cut(s)	183, 251
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	4 cut(s)	76, 133, 211, 223
NlaIV	GGNNCC	1 cut(s)	255
PagI	TCATGA	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	181, 249
PspGI	CCWGG	2 cut(s)	181, 249
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	253
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	183, 251
SetI	ASST	2 cut(s)	9, 143
SinI	GGWCC	1 cut(s)	253
SnaBI	TACGTA	1 cut(s)	141
Sse9I	AATT	4 cut(s)	86, 101, 201, 232
StyD4I	CCNGG	2 cut(s)	181, 249
TaiI	ACGT	1 cut(s)	143
TasI	AATT	4 cut(s)	86, 101, 201, 232
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	3 cut(s)	17, 118, 208
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	3 cut(s)	86, 101, 232
XmnI	GAANNNNTTC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.