FvH4_6g18150
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000245
Physical Location & Seq
Reverse (-)
11958966 .. 11966940
7975 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18150.t1

Sequence Viewer

Length: 4350 bp
ATGGCGTCGGCTTTGGCCGGAGACGATCTGGCACGGTCGACGAGCAGCCGGAGGAGCTATACTTCACATGGGAGCAAGCGGAGCTGGGCCTCTACAAGTTTCCGGGAAGTATGGCAAGCCCCGCCGGACGTGTTCAACCGGAGTGGCCGGCAGGACGAGGATGAAGAGCTCCGGTGGGCAGCCATAGAGCGGCTTCCGACTTATGATAGACTGAGAAGAGGGATGCTCCGGCAGGTACTCGACAATGGACGAGTGGTCACTGATGAAGTGGATGTTACGAGGCTTGGAGTGCAAGACAAGAAGGTGTTGATGGAGAACATACTCAAAGTTGTGGAAGATGATAATGAAAGGTTTCTTAGAAGACTTCGAGACAGAACCGACAGAGTTGGGATTGAAATTCCGAAGATTGAAGTTAGATATGAGCATCTGTCGATTGAAGGAGATGTGTATGTTGGGAGTAGAGCACTGCCTACTCTGCTTAATGCCACCTTGAACAGCATAGAGAGTGTTCTGGGTTTGATTCGTCTTTCTCCATCAAAGAAGAGAAAGATCCAGATACTTAAACATGTCAGTGGAATAGTCAGACCCTCTAGGATGACCCTGCTTTTGGGTCCTCCAGGTGCAGGTAAAACAACATTGCTGTTGGCACTTGCAGGGAAGCTTGATGACGATCTGAGGGTATCTGGGAACATCACTTACTGTGGTCATGAATTCAGTGAGTTTGTTCCCCAGAGGACATGTGCTTATATCAGTCAACATGATCTCCACTACGGAGAAATGACAGTGAGGGAGACATTGGATTTTTCCGGACGATGTTTGGGTGTGGGGACTAGATATGAAATGTTGGCTGAACTTTCCAGAAGAGAAAAGGAAGCAGGAATCAAGCCAGATCCTGAGATTGATGCATTCATGAAAGCCACTTCAGTTTCAGGCCAGAAGACTAGTTTGGTCACAGATTATGTTCTCAAGATTCTTGGTTTGGATATCTGTTCTGATATCATGGTTGGTGATGATATGAGAAGGGGTATTTCTGGTGGCCAGAAAAAGCGTGTCACAACTGGGGAAATGTTGGTAGGACCAGCAAAGGTGCTATTGATGGATGAAATTTCAACAGGGTTAGACAGTTCCACAACTTTTCAGATATGCAGGTACATGAGGCAAATGGTACATATAATGGATGTGACAATGGTCATCTCTCTTCTTCAACCAGCACCAGAGACATTTGAGCTGTTTGATGACCTTATCTTACTTTCAGAAGGTCAGATTGTGTACCAAGGTCCGCGTGACCGTGTTCTTGAGTTCTTTGAATACATGGGTTTCAAATGCCCAGAGAGGAAAGGAGTTGCTGACTTTCTGCAAGAAGTAACATCAAAGAAGGATCAAGAACAATACTGGTTCAAGAAAAGTGAACCTTACAGATACATTGATGTTGCTGAGTTTGTTGAGTGCTTCAGCAATTTCCAGTGTGGCCAACAGATTGCATCGGAACTTGGGGTTCCTTATGAGAAGTCAAGAGCTCACCCAGCTGCATTAGTCAAAGAGAAATATGGTATTTCAAATTGGGAACTGTTCAAGGCTTGTTTTGCAAGGGAGTGGCTTCTAATGAAGCGCAATTCTTTTGTGTATGTATTCAAGACCACTCAGATAACAATCATGTCTGTAATTGCCTTCACAGTGTTCCTTAGAACTCAAATGCCAGTGGGCACTGTACAAGATGGAGGGAAGTTTTTCGGAGCGCTGTTTTTCAGTCTGATCAATGTCATGTTCAATGGAATGGCAGAACTGGCAATGACTGTTTTCAGGCTTCCTGTGTTTTATAAACAGAGGGATTTCTTGTTTTATCCTGCTTGGGCTTTTGGATTACCCATTTGGGTCCTTAGGATCCCCCTATCTTTTATGGAATCGGCAATATGGATTATTCTCACTTATTACACCATTGGATTTGCTCCAGCTGCTAGCAGATTTTTCAAACAGTTTTTGGCTTTTTTTGGCATACATCAAATGGCACTGTCCCTCTTTCGGTTCATTGCTGCTCTTGGAAGAACACAAACAGTTGCAAATACTCTCGGTACCTTTACCTTGCTTATGGTGTTTGTCCTGGGAGGATTCATTGTTGCCAAGAATGACATTGAGCCTTGGATGATATGGGGCTACTATATATCTCCTATGATGTATGGACAAAATGCAATTGTCATGAATGAATTCCTCGATAAAAGATGGAGTGCGCCAAATACAGATCCAAGAATTAATGCACCTACAGTTGGGAAAGTCCTCCTTAAGTCCAGAGGATTCTTCACAGATGAATATTGGTTCTGGATATGTATTGGAGCACTATTTGGATTTTCTCTTCTTTTTAACATCTTATTCGTTGCAGCATTGACATTTCTGAATCCTCTTGGAGATACGAAAGCTGTTACAGCTGATGAAGAAAGTGAAAAAAAGAAGAAAAAGTCATCAACTGAAGGTCTCGATATGGCATTGAGAAGTTCTTCAGAGAATGCACCAACGAAAGGAATGGTTTTGCCCTTCCAACCCCTTCCACTTGCATTTAACCATGTGAACTACTACGTTGATATGCCAGCTGAAATGAAGAGTCAAGGAATTGATCAAGATCGCCTTCAGCTTCTGCGAGATGTCAGTGGTGCTTTTAGACCAGGAGTATTGACAGCACTTGTAGGTGTCAGTGGTGCTGGAAAAACAACTCTTATGGACGTCTTGGCTGGGAGAAAGACGGGTGGTTATATTGAAGGGACCATTAACATCTCTGGTTATCCAAAGAACCAAGAAACATTTGCTCGTGTTAGCGGTTATTGTGAGCAGAATGACATCCATTCCCCACATGTAACTGTGTACGAATCTCTGCTGTATTCAGCCTGGCTCCGTCTTTCTTCAGACGTAAAGACCCAAACAAGAAAGATGTTTGTTGAGGAAGTGATGGAGTTGGTTGAGCTTAATCCCATTAGAGATGCTCTAGTCGGTCTTCCTGGACTAGATGGTCTTTCAACAGAACAAAGGAAGAGACTAACCATAGCCGTGGAGCTGGTAGCCAACCCCTCTATTATTTTCATGGATGAACCAACATCTGGACTTGATGCCAGGGCTGCTGCCATCGTTATGCGTACTGTGAGAAACACGGTGAACACTGGAAGAACTGTTGTCTGCACTATTCATCAGCCAAGCATAGATATTTTTGAAGCCTTTGATGAGCTGCTTCTGATGAAAAGAGGAGGGCAAGTTATATATGCTGGACCTCTAGGTCGCCAATCTCACAAGCTTGTAGAATATTTTGAAGCCATTCCCGGGGTCACTAAGATTAGGGATGGTTACAATCCTGCTACATGGATGCTTGAGGTTACTGCTCCTTCAGTTGAGACTCAACTGGATGTGGACTTCGCAGACATTTATGCCAACTCCTCACTTTACCAGAGGAATCAAGAGCTTATCAAAGAGCTCAGTACTCCGGTGCCAGGGTCCAAGGATCTCTACTTCCCAACCAAATACTCCCAACCATTTTCTGTTCAATGTAAAGCTTGTTTCTGGAAAATGCATTGGTCTTATTGGAGAAACCCCCAGTACAACGCTATCAGGTTCTTCATGACAATAGTCATCGGTGGTTTATTTGGTCTTATCTTCTGGAACAAGGGACAACAAACAACCCAGCAACAAGATCTGATGAATCTTTTAGGAGCCATGTATGCTGCTGTGCTATTCCTTGGAGCTACCAATGCTTCTGCAGTGCAATCAGTTGTCGCAATTGAAAGAACAGTTTTCTATCGTGAAAGGGCGGCTGGGATGTACTCTGAACTTCCTTACGCATTCGCTCAGGTGGCCATAGAGACAATCTATGTGGCGATTCAAACTATTATCTACACTATGATCCTCTACTCTATGATTGGCTTTGAGTGGAAGATAGCCAAATTCCTCTGGTTCTACTACTACATACTTCTGTGCTTCATCTACTTCACAATGTATGGGATGATGGTTGTTGCACTCACTCCAGGCCACCAGATTGCTGCAATCGTTATGTCCTTTTTCCTCAGTTTCTGGAATTTGTTTTCCGGGTTTCTCATTCCAAGACCACAAATCCCAATCTGGTGGAGGTGGTACTACTGGGCTTCACCTGTGGCTTGGACGCTTTACGGCCTTGTGACCTCTCAAGTGGGTGACAAGAATGCTGATCTTGTGCTACCCGGATATGGCACTACGCCATTGAAGAGTTTCCTCAAGGATCAGCTGGGTTTTGATTATGACTTCCTACCGGCTGTCGCGGCTGCGCATGTTGGCTGGGTTCTCCTTTTCTTCTTTGTGTTTGCATATGGAATCAAGTACCTCAACTTTCAGAGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1450

Amino Acids

164.43

Weight (kDa)

8.31

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 113 - 162 7.2e-09 ABC-transporter N-terminal
ABC_tran PF00005 187 - 369 4.2e-16 ABC transporter
ABC2_membrane_7 PF19055 402 - 453 4.4e-06 ABC-2 type transporter
ABC2_membrane PF01061 523 - 735 5e-47 ABC-2 type transporter
PDR_assoc PF08370 740 - 805 1.7e-26 Plant PDR ABC transporter associated
ABC_tran PF00005 876 - 1028 2.3e-21 ABC transporter
ABC2_membrane PF01061 1174 - 1386 1.5e-57 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1818
AasI GACNNNNNNGTC 2 cut(s) 2994, 3255
AatII GACGTC 1 cut(s) 2715
Acc16I TGCGCA 1 cut(s) 4275
Acc36I ACCTGC 3 cut(s) 223, 614, 1137
Acc65I GGTACC 1 cut(s) 2069
AccB1I GGYRCC 2 cut(s) 2069, 3463
AccB7I CCANNNNNTGG 1 cut(s) 3083
AccBSI CCGCTC 1 cut(s) 190
AccI GTMKAC 1 cut(s) 38
AccII CGCG 2 cut(s) 1282, 4268
AccIII TCCGGA 1 cut(s) 806
AciI CCGC 7 cut(s) 79, 122, 190, 1280, 2805, 3785, 4268
AclWI GGATC 9 cut(s) 544, 884, 1386, 1876, 1889, 2231, 3486, 3871, 4236
AcoI YGGCCR 5 cut(s) 15, 145, 1036, 1468, 3828
AcsI RAATTY 6 cut(s) 396, 710, 1104, 2201, 3917, 4048
AcuI CTGAAG 7 cut(s) 906, 1435, 2475, 2481, 2603, 2874, 3348
AcyI GRCGYC 2 cut(s) 5, 2712
AfeI AGCGCT 1 cut(s) 1737
AflII CTTAAG 1 cut(s) 2276
AflIII ACRYGT 4 cut(s) 129, 565, 737, 2839
AhdI GACNNNNNGTC 1 cut(s) 254
AhlI ACTAGT 1 cut(s) 941
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 8 cut(s) 616, 2097, 2653, 2873, 2983, 3095, 3466, 3997
AjuI GAANNNNNNNTTGG 2 cut(s) 929, 961
Alw21I GWGCWC 5 cut(s) 171, 466, 1519, 2332, 3453
Alw26I GTCTC 8 cut(s) 15, 363, 785, 1211, 2471, 3013, 3365, 3830
AlwI GGATC 9 cut(s) 544, 884, 1386, 1876, 1889, 2231, 3486, 3871, 4236
AlwNI CAGNNNCTG 3 cut(s) 893, 2626, 4044
Ama87I CYCGRG 1 cut(s) 3299
Aor13HI TCCGGA 1 cut(s) 806
Aor51HI AGCGCT 1 cut(s) 1737
AoxI GGCC 9 cut(s) 15, 87, 145, 931, 1036, 1468, 3828, 4000, 4141
ApoI RAATTY 6 cut(s) 396, 710, 1104, 2201, 3917, 4048
ArsI GACNNNNNNTTYG 2 cut(s) 589, 621
AseI ATTAAT 1 cut(s) 2247
Asp700I GAANNNNTTC 6 cut(s) 351, 1727, 2201, 2488, 3294, 4217
Asp718I GGTACC 1 cut(s) 2069
AspLEI GCGC 4 cut(s) 1611, 1738, 2227, 4276
AspS9I GGNCC 8 cut(s) 87, 611, 1076, 1277, 1873, 2751, 3248, 3471
AsuC2I CCSGG 5 cut(s) 104, 3300, 3301, 4060, 4191
AsuHPI GGTGA 5 cut(s) 1019, 1511, 3148, 4110, 4175
AsuNHI GCTAGC 1 cut(s) 1955
AvaI CYCGRG 1 cut(s) 3299
AvaII GGWCC 7 cut(s) 611, 1076, 1277, 1873, 2751, 3248, 3471
AxyI CCTNAGG 1 cut(s) 1877
BaeGI GKGCMC 1 cut(s) 1706
BalI TGGCCA 3 cut(s) 1038, 1470, 3830
BamHI GGATCC 1 cut(s) 1881
BanI GGYRCC 2 cut(s) 2069, 3463
BanII GRGCYC 3 cut(s) 171, 1519, 3453
BauI CACGAG 1 cut(s) 2796
BbsI GAAGAC 3 cut(s) 367, 944, 2972
Bbv12I GWGCWC 5 cut(s) 171, 466, 1519, 2332, 3453
BceAI ACGGC 2 cut(s) 3017, 4156
BciT130I CCWGG 8 cut(s) 618, 2099, 2655, 2875, 2985, 3097, 3468, 3999
BclI TGATCA 2 cut(s) 1752, 2605
BcnI CCSGG 5 cut(s) 104, 3300, 3301, 4060, 4191
BcoDI GTCTC 8 cut(s) 15, 363, 785, 1211, 2471, 3013, 3365, 3830
BcuI ACTAGT 1 cut(s) 941
BfaI CTAG 7 cut(s) 591, 831, 942, 1956, 2972, 2990, 3254
BfmI CTRYAG 2 cut(s) 2256, 3732
BfoI RGCGCY 1 cut(s) 1739
BfrI CTTAAG 1 cut(s) 2276
BfuAI ACCTGC 3 cut(s) 223, 614, 1137
BglII AGATCT 1 cut(s) 3667
BmcAI AGTACT 1 cut(s) 3457
Bme18I GGWCC 7 cut(s) 611, 1076, 1277, 1873, 2751, 3248, 3471
BmeRI GACNNNNNGTC 1 cut(s) 254
BmeT110I CYCGRG 1 cut(s) 3299
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 8 cut(s) 87, 611, 1076, 1277, 1873, 2751, 3248, 3471
BmrI ACTGGG 3 cut(s) 1068, 3565, 4120
BmsI GCATC 7 cut(s) 213, 433, 892, 1490, 2956, 3082, 3333
BmtI GCTAGC 1 cut(s) 1959
BmuI ACTGGG 3 cut(s) 1068, 3565, 4120
BoxI GACNNNNGTC 2 cut(s) 1187, 3602
BpiI GAAGAC 3 cut(s) 367, 944, 2972
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BpmI CTGGAG 3 cut(s) 600, 1932, 3981
Bpu10I CCTNAGC 1 cut(s) 3822
BpuEI CTTGAG 5 cut(s) 950, 1316, 3368, 4140, 4208
BpuMI CCSGG 5 cut(s) 104, 3300, 3301, 4060, 4191
BsaBI GATNNNNATC 3 cut(s) 669, 1649, 2610
BsaHI GRCGYC 2 cut(s) 5, 2712
BsaI GGTCTC 1 cut(s) 2471
BsaWI WCCGGW 4 cut(s) 138, 171, 806, 3460
BsaXI ACNNNNNCTCC 4 cut(s) 747, 777, 3219, 3249
Bse118I RCCGGY 2 cut(s) 147, 4258
Bse1I ACTGG 9 cut(s) 1063, 1397, 1462, 1697, 1788, 3148, 3384, 3571, 4115
Bse21I CCTNAGG 1 cut(s) 1877
Bse3DI GCAATG 3 cut(s) 635, 1794, 2025
Bse8I GATNNNNATC 3 cut(s) 669, 1649, 2610
BseAI TCCGGA 1 cut(s) 806
BseBI CCWGG 8 cut(s) 618, 2099, 2655, 2875, 2985, 3097, 3468, 3999
BseJI GATNNNNATC 3 cut(s) 669, 1649, 2610
BseMI GCAATG 3 cut(s) 635, 1794, 2025
BseMII CTCAG 8 cut(s) 203, 665, 885, 1425, 1655, 3466, 3836, 4051
BseNI ACTGG 9 cut(s) 1063, 1397, 1462, 1697, 1788, 3148, 3384, 3571, 4115
BseRI GAGGAG 3 cut(s) 67, 3240, 3403
BseSI GKGCMC 1 cut(s) 1706
BseYI CCCAGC 7 cut(s) 84, 1522, 2720, 3657, 3788, 4234, 4284
BsgI GTGCAG 2 cut(s) 642, 3145
Bsh1236I CGCG 2 cut(s) 1282, 4268
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 9 cut(s) 17, 89, 147, 933, 1038, 1470, 3830, 4002, 4143
BshNI GGYRCC 2 cut(s) 2069, 3463
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 5 cut(s) 171, 466, 1519, 2332, 3453
BsiHKCI CYCGRG 1 cut(s) 3299
BslFI GGGAC 4 cut(s) 841, 1996, 2764, 3657
BsmAI GTCTC 8 cut(s) 15, 363, 785, 1211, 2471, 3013, 3365, 3830
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 4 cut(s) 841, 1996, 2764, 3657
BsmI GAATGC 4 cut(s) 905, 2503, 3815, 4177
BsnI GGCC 9 cut(s) 17, 89, 147, 933, 1038, 1470, 3830, 4002, 4143
Bso31I GGTCTC 1 cut(s) 2471
BsoBI CYCGRG 1 cut(s) 3299
Bsp1286I GDGCHC 6 cut(s) 171, 466, 1519, 1706, 2332, 3453
Bsp13I TCCGGA 1 cut(s) 806
Bsp1407I TGTACA 1 cut(s) 1708
BspACI CCGC 7 cut(s) 79, 122, 190, 1280, 2805, 3785, 4268
BspANI GGCC 9 cut(s) 17, 89, 147, 933, 1038, 1470, 3830, 4002, 4143
BspCNI CTCAG 8 cut(s) 204, 666, 886, 1426, 1654, 3465, 3835, 4050
BspEI TCCGGA 1 cut(s) 806
BspFNI CGCG 2 cut(s) 1282, 4268
BspHI TCATGA 4 cut(s) 706, 909, 2193, 3594
BspMAI CTGCAG 1 cut(s) 3736
BspMI ACCTGC 3 cut(s) 223, 614, 1137
BspOI GCTAGC 1 cut(s) 1959
BspPI GGATC 9 cut(s) 544, 884, 1386, 1876, 1889, 2231, 3486, 3871, 4236
BspQI GCTCTTC 1 cut(s) 159
BspT107I GGYRCC 2 cut(s) 2069, 3463
BspTI CTTAAG 1 cut(s) 2276
BspTNI GGTCTC 1 cut(s) 2471
BsrBI CCGCTC 1 cut(s) 190
BsrDI GCAATG 3 cut(s) 635, 1794, 2025
BsrFI RCCGGY 2 cut(s) 147, 4258
BsrGI TGTACA 1 cut(s) 1708
BsrI ACTGG 9 cut(s) 1063, 1397, 1462, 1697, 1788, 3148, 3384, 3571, 4115
BssAI RCCGGY 2 cut(s) 147, 4258
BssNI GRCGYC 2 cut(s) 5, 2712
BssSI CACGAG 1 cut(s) 2796
BssT1I CCWWGG 4 cut(s) 1273, 2135, 3474, 3712
Bst2BI CACGAG 1 cut(s) 2796
Bst2UI CCWGG 8 cut(s) 618, 2099, 2655, 2875, 2985, 3097, 3468, 3999
Bst6I CTCTTC 9 cut(s) 159, 211, 536, 856, 1203, 2352, 2585, 3011, 4208
BstACI GRCGYC 2 cut(s) 5, 2712
BstAFI CTTAAG 1 cut(s) 2276
BstAUI TGTACA 1 cut(s) 1708
BstC8I GCNNGC 5 cut(s) 77, 117, 149, 1957, 2580
BstDSI CCRYGG 1 cut(s) 3033
BstFNI CGCG 2 cut(s) 1282, 4268
BstH2I RGCGCY 1 cut(s) 1739
BstHHI GCGC 4 cut(s) 1611, 1738, 2227, 4276
BstMAI GTCTC 8 cut(s) 15, 363, 785, 1211, 2471, 3013, 3365, 3830
BstMCI CGRYCG 1 cut(s) 38
BstNI CCWGG 8 cut(s) 618, 2099, 2655, 2875, 2985, 3097, 3468, 3999
BstNSI RCATGY 4 cut(s) 569, 741, 2843, 4280
BstPAI GACNNNNGTC 2 cut(s) 1187, 3602
BstSFI CTRYAG 2 cut(s) 2256, 3732
BstSLI GKGCMC 1 cut(s) 1706
BstUI CGCG 2 cut(s) 1282, 4268
BstV2I GAAGAC 3 cut(s) 367, 944, 2972
BstX2I RGATCY 6 cut(s) 549, 889, 1881, 2236, 3478, 3667
BstXI CCANNNNNNTGG 2 cut(s) 3034, 4095
BstYI RGATCY 6 cut(s) 549, 889, 1881, 2236, 3478, 3667
Bsu36I CCTNAGG 1 cut(s) 1877
BsuRI GGCC 9 cut(s) 17, 89, 147, 933, 1038, 1470, 3830, 4002, 4143
BtgI CCRYGG 1 cut(s) 3033
BtrI CACGTC 1 cut(s) 130
BtsI GCAGTG 2 cut(s) 464, 3741
BveI ACCTGC 3 cut(s) 223, 614, 1137
Cac8I GCNNGC 5 cut(s) 77, 117, 149, 1957, 2580
CaiI CAGNNNCTG 3 cut(s) 893, 2626, 4044
CciI TCATGA 4 cut(s) 706, 909, 2193, 3594
CfoI GCGC 4 cut(s) 1611, 1738, 2227, 4276
Cfr10I RCCGGY 2 cut(s) 147, 4258
Cfr13I GGNCC 8 cut(s) 87, 611, 1076, 1277, 1873, 2751, 3248, 3471
Cfr9I CCCGGG 1 cut(s) 3299
CseI GACGC 1 cut(s) 4141
CspCI CAANNNNNGTGG 4 cut(s) 124, 159, 3828, 3863
DrdI GACNNNNNNGTC 2 cut(s) 2994, 3255
DriI GACNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 2 cut(s) 2994, 3255
EaeI YGGCCR 5 cut(s) 15, 145, 1036, 1468, 3828
Eam1104I CTCTTC 9 cut(s) 159, 211, 536, 856, 1203, 2352, 2585, 3011, 4208
Eam1105I GACNNNNNGTC 1 cut(s) 254
EarI CTCTTC 9 cut(s) 159, 211, 536, 856, 1203, 2352, 2585, 3011, 4208
Ecl136II GAGCTC 3 cut(s) 169, 1517, 3451
Eco130I CCWWGG 4 cut(s) 1273, 2135, 3474, 3712
Eco24I GRGCYC 3 cut(s) 171, 1519, 3453
Eco31I GGTCTC 1 cut(s) 2471
Eco32I GATATC 2 cut(s) 985, 997
Eco47I GGWCC 7 cut(s) 611, 1076, 1277, 1873, 2751, 3248, 3471
Eco47III AGCGCT 1 cut(s) 1737
Eco53kI GAGCTC 3 cut(s) 169, 1517, 3451
Eco57I CTGAAG 7 cut(s) 906, 1435, 2475, 2481, 2603, 2874, 3348
Eco81I CCTNAGG 1 cut(s) 1877
Eco88I CYCGRG 1 cut(s) 3299
EcoICRI GAGCTC 3 cut(s) 169, 1517, 3451
EcoO109I RGGNCCY 2 cut(s) 611, 1873
EcoRI GAATTC 2 cut(s) 710, 2201
EcoRII CCWGG 8 cut(s) 616, 2097, 2653, 2873, 2983, 3095, 3466, 3997
EcoRV GATATC 2 cut(s) 985, 997
EcoT14I CCWWGG 4 cut(s) 1273, 2135, 3474, 3712
EcoT22I ATGCAT 2 cut(s) 907, 3549
EcoT38I GRGCYC 3 cut(s) 171, 1519, 3453
ErhI CCWWGG 4 cut(s) 1273, 2135, 3474, 3712
Esp3I CGTCTC 1 cut(s) 15
FalI AAGNNNNNCTT 6 cut(s) 1396, 1428, 2259, 2291, 2601, 2633
FaqI GGGAC 4 cut(s) 841, 1996, 2764, 3657
FauI CCCGC 1 cut(s) 129
FauNDI CATATG 1 cut(s) 4315
FbaI TGATCA 2 cut(s) 1752, 2605
FblI GTMKAC 1 cut(s) 38
FriOI GRGCYC 3 cut(s) 171, 1519, 3453
FspBI CTAG 7 cut(s) 591, 831, 942, 1956, 2972, 2990, 3254
FspI TGCGCA 1 cut(s) 4275
GlaI GCGC 4 cut(s) 1610, 1737, 2226, 4275
GsaI CCCAGC 7 cut(s) 88, 1526, 2724, 3661, 3792, 4238, 4288
GsuI CTGGAG 3 cut(s) 600, 1932, 3981
HaeII RGCGCY 1 cut(s) 1739
HaeIII GGCC 9 cut(s) 17, 89, 147, 933, 1038, 1470, 3830, 4002, 4143
HgaI GACGC 1 cut(s) 4141
HhaI GCGC 4 cut(s) 1611, 1738, 2227, 4276
Hin1I GRCGYC 2 cut(s) 5, 2712
Hin6I GCGC 4 cut(s) 1609, 1736, 2225, 4274
HinP1I GCGC 4 cut(s) 1609, 1736, 2225, 4274
HincII GTYRAC 2 cut(s) 39, 755
HindII GTYRAC 2 cut(s) 39, 755
HindIII AAGCTT 3 cut(s) 659, 3272, 3528
HphI GGTGA 5 cut(s) 1019, 1511, 3148, 4110, 4175
Hpy166II GTNNAC 8 cut(s) 39, 755, 1270, 1409, 2560, 2851, 3139, 3388
Hpy8I GTNNAC 8 cut(s) 39, 755, 1270, 1409, 2560, 2851, 3139, 3388
Hpy99I CGWCG 2 cut(s) 10, 43
HpyCH4IV ACGT 4 cut(s) 129, 2568, 2712, 2895
HpySE526I ACGT 4 cut(s) 129, 2568, 2712, 2895
Hsp92I GRCGYC 2 cut(s) 5, 2712
HspAI GCGC 4 cut(s) 1609, 1736, 2225, 4274
Kpn2I TCCGGA 1 cut(s) 806
KpnI GGTACC 1 cut(s) 2073
KroI GCCGGC 1 cut(s) 147
KroNI GCCGGC 1 cut(s) 149
Ksp22I TGATCA 2 cut(s) 1752, 2605
LguI GCTCTTC 1 cut(s) 159
LweI GCATC 7 cut(s) 213, 433, 892, 1490, 2956, 3082, 3333
MaeI CTAG 7 cut(s) 591, 831, 942, 1956, 2972, 2990, 3254
MaeII ACGT 4 cut(s) 129, 2568, 2712, 2895
MbiI CCGCTC 1 cut(s) 190
MfeI CAATTG 2 cut(s) 2187, 3753
MflI RGATCY 6 cut(s) 549, 889, 1881, 2236, 3478, 3667
MhlI GDGCHC 6 cut(s) 171, 466, 1519, 1706, 2332, 3453
MlsI TGGCCA 3 cut(s) 1038, 1470, 3830
MluNI TGGCCA 3 cut(s) 1038, 1470, 3830
MlyI GAGTC 2 cut(s) 2602, 3367
MmeI TCCRAC 2 cut(s) 221, 2554
Mox20I TGGCCA 3 cut(s) 1038, 1470, 3830
Mph1103I ATGCAT 2 cut(s) 907, 3549
MroI TCCGGA 1 cut(s) 806
MroNI GCCGGC 1 cut(s) 147
MroXI GAANNNNTTC 6 cut(s) 351, 1727, 2201, 2488, 3294, 4217
MscI TGGCCA 3 cut(s) 1038, 1470, 3830
MseI TTAA 8 cut(s) 480, 561, 2247, 2277, 2355, 2550, 2757, 2952
MslI CAYNNNNRTG 3 cut(s) 570, 3032, 3113
Msp20I TGGCCA 3 cut(s) 1038, 1470, 3830
MspA1I CMGCKG 5 cut(s) 1526, 1952, 2420, 2582, 4234
MspCI CTTAAG 1 cut(s) 2276
MunI CAATTG 2 cut(s) 2187, 3753
Mva1269I GAATGC 4 cut(s) 905, 2503, 3815, 4177
MvaI CCWGG 8 cut(s) 618, 2099, 2655, 2875, 2985, 3097, 3468, 3999
MvnI CGCG 2 cut(s) 1282, 4268
NaeI GCCGGC 1 cut(s) 149
NciI CCSGG 5 cut(s) 104, 3300, 3301, 4060, 4191
NdeI CATATG 1 cut(s) 4315
NgoMIV GCCGGC 1 cut(s) 147
NheI GCTAGC 1 cut(s) 1955
NmuCI GTSAC 8 cut(s) 256, 949, 1051, 1180, 1283, 3304, 4147, 4163
NsbI TGCGCA 1 cut(s) 4275
NsiI ATGCAT 2 cut(s) 907, 3549
NspI RCATGY 4 cut(s) 569, 741, 2843, 4280
PagI TCATGA 4 cut(s) 706, 909, 2193, 3594
PciI ACATGT 3 cut(s) 565, 737, 2839
PciSI GCTCTTC 1 cut(s) 159
PctI GAATGC 4 cut(s) 905, 2503, 3815, 4177
PdiI GCCGGC 1 cut(s) 149
PdmI GAANNNNTTC 6 cut(s) 351, 1727, 2201, 2488, 3294, 4217
PflMI CCANNNNNTGG 1 cut(s) 3083
PfoI TCCNGGA 2 cut(s) 102, 2983
PleI GAGTC 2 cut(s) 2601, 3367
PpsI GAGTC 2 cut(s) 2601, 3367
PpuMI RGGWCCY 2 cut(s) 611, 1873
PscI ACATGT 3 cut(s) 565, 737, 2839
PshAI GACNNNNGTC 2 cut(s) 1187, 3602
PshBI ATTAAT 1 cut(s) 2247
PsiI TTATAA 1 cut(s) 1818
Psp124BI GAGCTC 3 cut(s) 171, 1519, 3453
Psp5II RGGWCCY 2 cut(s) 611, 1873
Psp6I CCWGG 8 cut(s) 616, 2097, 2653, 2873, 2983, 3095, 3466, 3997
PspFI CCCAGC 7 cut(s) 84, 1522, 2720, 3657, 3788, 4234, 4284
PspGI CCWGG 8 cut(s) 616, 2097, 2653, 2873, 2983, 3095, 3466, 3997
PspPI GGNCC 8 cut(s) 87, 611, 1076, 1277, 1873, 2751, 3248, 3471
PspPPI RGGWCCY 2 cut(s) 611, 1873
PsrI GAACNNNNNNTAC 2 cut(s) 680, 712
PstI CTGCAG 1 cut(s) 3736
PstNI CAGNNNCTG 3 cut(s) 893, 2626, 4044
PsuI RGATCY 6 cut(s) 549, 889, 1881, 2236, 3478, 3667
PvuII CAGCTG 5 cut(s) 1526, 1952, 2420, 2582, 4234
RseI CAYNNNNRTG 3 cut(s) 570, 3032, 3113
SacI GAGCTC 3 cut(s) 171, 1519, 3453
SalI GTCGAC 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 8 cut(s) 480, 561, 2247, 2277, 2355, 2550, 2757, 2952
Sau96I GGNCC 8 cut(s) 87, 611, 1076, 1277, 1873, 2751, 3248, 3471
ScaI AGTACT 1 cut(s) 3457
SchI GAGTC 2 cut(s) 2602, 3367
SduI GDGCHC 6 cut(s) 171, 466, 1519, 1706, 2332, 3453
SfaNI GCATC 7 cut(s) 213, 433, 892, 1490, 2956, 3082, 3333
SfcI CTRYAG 2 cut(s) 2256, 3732
SinI GGWCC 7 cut(s) 611, 1076, 1277, 1873, 2751, 3248, 3471
SmaI CCCGGG 1 cut(s) 3301
SmiMI CAYNNNNRTG 3 cut(s) 570, 3032, 3113
SmlI CTYRAG 6 cut(s) 965, 1295, 2276, 3347, 4155, 4223
SmoI CTYRAG 6 cut(s) 965, 1295, 2276, 3347, 4155, 4223
SpeI ACTAGT 1 cut(s) 941
SsiI CCGC 7 cut(s) 79, 122, 190, 1280, 2805, 3785, 4268
SspI AATATT 2 cut(s) 2306, 3284
SspMI CTAG 7 cut(s) 591, 831, 942, 1956, 2972, 2990, 3254
SstI GAGCTC 3 cut(s) 171, 1519, 3453
StyI CCWWGG 4 cut(s) 1273, 2135, 3474, 3712
TaiI ACGT 4 cut(s) 132, 2571, 2715, 2898
TaqI TCGA 6 cut(s) 38, 240, 367, 431, 2208, 2469
TaqII GACCGA 1 cut(s) 2966
TatI WGTACW 4 cut(s) 1708, 3455, 3573, 3795
TauI GCSGC 3 cut(s) 193, 3788, 4271
Tru1I TTAA 8 cut(s) 480, 561, 2247, 2277, 2355, 2550, 2757, 2952
Tru9I TTAA 8 cut(s) 480, 561, 2247, 2277, 2355, 2550, 2757, 2952
TseFI GTSAC 8 cut(s) 256, 949, 1051, 1180, 1283, 3304, 4147, 4163
Tsp45I GTSAC 8 cut(s) 256, 949, 1051, 1180, 1283, 3304, 4147, 4163
TspGWI ACGGA 2 cut(s) 786, 2870
TspMI CCCGGG 1 cut(s) 3299
Van91I CCANNNNNTGG 1 cut(s) 3083
Vha464I CTTAAG 1 cut(s) 2276
VpaK11BI GGWCC 7 cut(s) 611, 1076, 1277, 1873, 2751, 3248, 3471
VspI ATTAAT 1 cut(s) 2247
XapI RAATTY 6 cut(s) 396, 710, 1104, 2201, 3917, 4048
XceI RCATGY 4 cut(s) 569, 741, 2843, 4280
XmaI CCCGGG 1 cut(s) 3299
XmiI GTMKAC 1 cut(s) 38
XmnI GAANNNNTTC 6 cut(s) 351, 1727, 2201, 2488, 3294, 4217
XspI CTAG 7 cut(s) 591, 831, 942, 1956, 2972, 2990, 3254
ZraI GACGTC 1 cut(s) 2713
ZrmI AGTACT 1 cut(s) 3457
Zsp2I ATGCAT 2 cut(s) 907, 3549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.