Rroxscaffold_1G00025240

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
31727003 .. 31729788
2786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025240.1

Sequence Viewer

Length: 1797 bp
ATGGCGGCGGCAGCAATGGCCGGAGAAGACTTAATAAGGCAGTCGAGCAGCCGGAGGAGCTCGCTGTCGAGCAGCCGGAGGAGCTGGCGGTCGACGAGTGTCCGAGAAATGTGGAACGCGCCGGACGTGTTCCAGAGGAGCGTCCGGCAGCCGGCGCTGGACGAGGAGGAGGAGCTCAAGTGGGCGGCCATAGAGCGGTTGCCGACTTATGATAGGTTGAGGAGAGGCATGTTGAGGAATGTGATGAGCAATGGAAGGGTTGTGGCTGAAGAAGTTGACGTTGCGCATCTTGGGGATCAAGATAAGAAGCAGTTGATGGAGAGCATACTCAAGGTTATTGAGGAGGATAATGAAAAGTTCTTGAAGAAGCTCAGGGCCAGAAATGACAGGGTTGGCATCGATATTCCTAAAGTTGAGGTTAGATTCCAGAATTTATCAATAGATGGAGATGCTTTTGTAGGCACTAGAGCGCTTCCAACTCTATGGAATTCCACCTTGAACACAATAGAGGTAACTGGGAAAGTGACTTACTGCGGCCATGAATTTAACGAATTTGTACCTCAGAGAACCTCTGCTTATATTAGCCAGCATGATCTTCATTATGGTGAGATGACAGTTCGTGAAACCTTTGATTTCTCCGGACGTTGCCTAGGAGTTGGAACAAGGTATGATATACTAGCAGAGTTGTCTAGACGGGAGAAAGATGCAGGTATCAAACCAGATCCTGCGATTGATGCATACATGAAAGCCACTTCTGTGGCGGGCCAGGAAACAAGTTTGATCACAGATTATGTCCTCAAGATACTTGGATTAGACATCTGTGCTGATATTATGGTGGGTGATGACATGAGAAGGGGAATATCCGGTGGACAAAAGAAGCGTGTCACGACTGGAGAAATGTTGGTTGGACCAGCAAAAGCATTTTTCATGGATGAAATATCAACGGGGTTGGACAGTTCCACAACCTTTCAGATTATCAAATACATGAGACAGATGGTTCACATTATGGATGTGTCAATGGTCATCTCTCTCTTGCAGCCTGCACCTGAGACGTACGATCTTTTTGATGATATTATCCTTCTTTCCGAGGGTCAGATTGTTTATCAGGGCCCACGTGAGAATGTCCTCGAGTTCTTTGAATATATGGGATTCAAATGCCCTGACAGAAAAGGTGTTGCAGACTTCTTGCAAGAAGTGACCTCAAGGAAGGACCAGGAACAATACTGGTGTAAGAAGAACCAACCTTACAGATTAGTCACAGTATCTGATTTTGCTCGGGCGTTCAGCTCCTTCCATGTTGGCCAACGGCTTGGGGAAGAACTAAGAGTTCCTTATGATAAAAGAAATGCCCATCCTGCTGCTTTGGTCAAGGAAAAGTATGGAATATCCAATAAGGAGCTCTTCAAGGCATGCTTTGCAAGGGAATGGCTTCTAATGAAGCGGAACTCTTTTGTGTACATATTTAAAACTACACAGATTGCCATCATGGCTACAATTGCTTTGACCGTATTCTTAAGAACAGAAATGAAACCTGGGGAACTAGATGGTGCAGCAAAGTATTGGGGGGCAATGTTTTTCAGTCTCATTAACGTCATGTTTAATGGAGTGGCAGAGCTTGCAATGACAGTTTTCCGGCTTCCAGTGTTCTTTAAACAGAGGGATGCCTTGTTCTATCCAGCGTGGGCTTTTGCCTTGCCCATTTGGGTGACCAGAATTCCTGTTTCAGTGTTGGAATCTGCGATATGGATCATTTTTACCTATTACACCATAGGATTTGCACCTGATCCTAGTAGGTGA

Protein Analysis

598

Amino Acids

68.24

Weight (kDa)

7.06

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 115 - 163 3.1e-09 ABC-transporter N-terminal
ABC2_membrane_7 PF19055 346 - 397 3.3e-06 ABC-2 type transporter
ABC2_membrane PF01061 467 - 597 4.7e-24 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 285
Acc36I ACCTGC 1 cut(s) 698
AccBSI CCGCTC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 92
AccII CGCG 1 cut(s) 119
AccIII TCCGGA 1 cut(s) 638
AciI CCGC 8 cut(s) 5, 8, 88, 185, 196, 534, 761, 1441
AclWI GGATC 4 cut(s) 303, 716, 1754, 1778
AcoI YGGCCR 4 cut(s) 18, 186, 535, 1300
AcsI RAATTY 5 cut(s) 430, 487, 542, 551, 1713
AcuI CTGAAG 1 cut(s) 288
AcvI CACGTG 1 cut(s) 1115
AfaI GTAC 3 cut(s) 558, 1055, 1457
AfeI AGCGCT 1 cut(s) 471
AfiI CCNNNNNNNGG 2 cut(s) 151, 195
AflII CTTAAG 1 cut(s) 1513
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 5 cut(s) 364, 499, 1139, 1153, 1405
AjiI CACGTC 1 cut(s) 127
AjnI CCWGG 3 cut(s) 765, 1212, 1531
AjuI GAANNNNNNNTTGG 2 cut(s) 888, 920
AleI CACNNNNGTG 1 cut(s) 755
AloI GAACNNNNNNTCC 2 cut(s) 1652, 1684
AluBI AGCT 7 cut(s) 60, 84, 175, 370, 1287, 1399, 1615
AluI AGCT 7 cut(s) 60, 84, 175, 370, 1287, 1399, 1615
Alw21I GWGCWC 3 cut(s) 62, 177, 1401
Alw26I GTCTC 3 cut(s) 982, 1043, 1586
AlwI GGATC 4 cut(s) 303, 716, 1754, 1778
AlwNI CAGNNNCTG 2 cut(s) 725, 1265
Ama87I CYCGRG 2 cut(s) 1127, 1275
Aor13HI TCCGGA 1 cut(s) 638
Aor51HI AGCGCT 1 cut(s) 471
AoxI GGCC 7 cut(s) 18, 186, 375, 535, 763, 1108, 1300
ApaI GGGCCC 1 cut(s) 1112
ApeKI GCWGC 7 cut(s) 11, 48, 72, 148, 1036, 1358, 1550
ApoI RAATTY 5 cut(s) 430, 487, 542, 551, 1713
Asp700I GAANNNNTTC 1 cut(s) 1428
AspA2I CCTAGG 1 cut(s) 649
AspLEI GCGC 4 cut(s) 121, 157, 286, 472
AspS9I GGNCC 6 cut(s) 375, 763, 908, 1108, 1109, 1210
AsuHPI GGTGA 3 cut(s) 617, 851, 1717
AvaI CYCGRG 2 cut(s) 1127, 1275
AvaII GGWCC 2 cut(s) 908, 1210
AvrII CCTAGG 1 cut(s) 649
BaeGI GKGCMC 1 cut(s) 1112
BalI TGGCCA 1 cut(s) 1302
BanII GRGCYC 4 cut(s) 62, 177, 1112, 1401
BbrPI CACGTG 1 cut(s) 1115
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 3 cut(s) 62, 177, 1401
BbvI GCAGC 7 cut(s) 23, 60, 84, 160, 1048, 1345, 1562
BccI CCATC 6 cut(s) 310, 437, 988, 1359, 1490, 1538
BceAI ACGGC 1 cut(s) 1322
BciT130I CCWGG 3 cut(s) 767, 1214, 1533
BclI TGATCA 1 cut(s) 780
BcoDI GTCTC 3 cut(s) 982, 1043, 1586
BfaI CTAG 6 cut(s) 465, 650, 677, 690, 1541, 1788
BfoI RGCGCY 2 cut(s) 158, 473
BfrI CTTAAG 1 cut(s) 1513
BfuAI ACCTGC 1 cut(s) 698
BglI GCCNNNNNGGC 1 cut(s) 1487
BlnI CCTAGG 1 cut(s) 649
Bme1390I CCNGG 3 cut(s) 767, 1214, 1533
Bme18I GGWCC 2 cut(s) 908, 1210
BmeT110I CYCGRG 2 cut(s) 1127, 1275
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 6 cut(s) 375, 763, 908, 1108, 1109, 1210
BmiI GGNNCC 1 cut(s) 1110
BmrFI CCNGG 3 cut(s) 767, 1214, 1533
BmrI ACTGGG 1 cut(s) 525
BmsI GCATC 6 cut(s) 295, 405, 439, 694, 724, 1651
BmuI ACTGGG 1 cut(s) 525
BoxI GACNNNNGTC 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 912
Bpu10I CCTNAGC 1 cut(s) 371
BpuEI CTTGAG 4 cut(s) 161, 314, 782, 1186
Bsa29I ATCGAT 1 cut(s) 399
BsaAI YACGTR 1 cut(s) 1115
BsaBI GATNNNNATC 2 cut(s) 1481, 1745
BsaJI CCNNGG 3 cut(s) 649, 1086, 1532
BsaWI WCCGGW 2 cut(s) 638, 863
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 195
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 4 cut(s) 520, 895, 1229, 1640
Bse3DI GCAATG 4 cut(s) 21, 256, 1575, 1626
Bse8I GATNNNNATC 2 cut(s) 1481, 1745
BseAI TCCGGA 1 cut(s) 638
BseBI CCWGG 3 cut(s) 767, 1214, 1533
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 3 cut(s) 649, 1086, 1532
BseGI GGATG 4 cut(s) 937, 1015, 1351, 1666
BseJI GATNNNNATC 2 cut(s) 1481, 1745
BseLI CCNNNNNNNGG 2 cut(s) 151, 195
BseMI GCAATG 4 cut(s) 21, 256, 1575, 1626
BseMII CTCAG 3 cut(s) 385, 575, 1038
BseNI ACTGG 4 cut(s) 520, 895, 1229, 1640
BseRI GAGGAG 8 cut(s) 70, 94, 151, 179, 182, 185, 235, 356
BseSI GKGCMC 1 cut(s) 1112
BseXI GCAGC 7 cut(s) 23, 60, 84, 160, 1048, 1345, 1562
BsgI GTGCAG 2 cut(s) 1026, 1569
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 92
BshFI GGCC 7 cut(s) 20, 188, 377, 537, 765, 1110, 1302
BshVI ATCGAT 1 cut(s) 399
BsiEI CGRYCG 1 cut(s) 92
BsiHKAI GWGCWC 3 cut(s) 62, 177, 1401
BsiHKCI CYCGRG 2 cut(s) 1127, 1275
BsiSI CCGG 9 cut(s) 21, 52, 76, 122, 145, 152, 639, 864, 1633
BsiWI CGTACG 1 cut(s) 1053
BslI CCNNNNNNNGG 2 cut(s) 151, 195
BsmAI GTCTC 3 cut(s) 982, 1043, 1586
BsmBI CGTCTC 1 cut(s) 1043
BsnI GGCC 7 cut(s) 20, 188, 377, 537, 765, 1110, 1302
BsoBI CYCGRG 2 cut(s) 1127, 1275
Bsp120I GGGCCC 1 cut(s) 1108
Bsp1286I GDGCHC 4 cut(s) 62, 177, 1112, 1401
Bsp13I TCCGGA 1 cut(s) 638
Bsp1407I TGTACA 1 cut(s) 1455
Bsp143I GATC 7 cut(s) 295, 592, 721, 780, 1057, 1746, 1783
BspACI CCGC 8 cut(s) 5, 8, 88, 185, 196, 534, 761, 1441
BspANI GGCC 7 cut(s) 20, 188, 377, 537, 765, 1110, 1302
BspCNI CTCAG 3 cut(s) 384, 574, 1039
BspDI ATCGAT 1 cut(s) 399
BspEI TCCGGA 1 cut(s) 638
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 1110
BspMI ACCTGC 1 cut(s) 698
BspPI GGATC 4 cut(s) 303, 716, 1754, 1778
BspQI GCTCTTC 1 cut(s) 1406
BspTI CTTAAG 1 cut(s) 1513
BsrBI CCGCTC 1 cut(s) 196
BsrDI GCAATG 4 cut(s) 21, 256, 1575, 1626
BsrFI RCCGGY 1 cut(s) 151
BsrGI TGTACA 1 cut(s) 1455
BsrI ACTGG 4 cut(s) 520, 895, 1229, 1640
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 3 cut(s) 649, 1086, 1532
BssMI GATC 7 cut(s) 295, 592, 721, 780, 1057, 1746, 1783
BssT1I CCWWGG 1 cut(s) 649
Bst2UI CCWGG 3 cut(s) 767, 1214, 1533
Bst4CI ACNGT 5 cut(s) 616, 956, 1261, 1507, 1627
Bst6I CTCTTC 1 cut(s) 1406
BstAFI CTTAAG 1 cut(s) 1513
BstAPI GCANNNNNTGC 2 cut(s) 1415, 1616
BstAUI TGTACA 1 cut(s) 1455
BstBAI YACGTR 1 cut(s) 1115
BstC8I GCNNGC 8 cut(s) 62, 86, 153, 587, 763, 1041, 1411, 1617
BstDEI CTNAG 4 cut(s) 371, 561, 1047, 1322
BstEII GGTNACC 1 cut(s) 1705
BstF5I GGATG 4 cut(s) 937, 1015, 1351, 1666
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 2 cut(s) 158, 473
BstHHI GCGC 4 cut(s) 121, 157, 286, 472
BstKTI GATC 7 cut(s) 298, 595, 724, 783, 1060, 1749, 1786
BstMAI GTCTC 3 cut(s) 982, 1043, 1586
BstMBI GATC 7 cut(s) 295, 592, 721, 780, 1057, 1746, 1783
BstMCI CGRYCG 1 cut(s) 92
BstNI CCWGG 3 cut(s) 767, 1214, 1533
BstNSI RCATGY 2 cut(s) 232, 1413
BstPAI GACNNNNGTC 1 cut(s) 98
BstPI GGTNACC 1 cut(s) 1705
BstSCI CCNGG 3 cut(s) 765, 1212, 1531
BstSLI GKGCMC 1 cut(s) 1112
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 7 cut(s) 23, 60, 84, 160, 1048, 1345, 1562
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 721
BstXI CCANNNNNNTGG 3 cut(s) 483, 757, 1310
BstYI RGATCY 1 cut(s) 721
Bsu15I ATCGAT 1 cut(s) 399
BsuRI GGCC 7 cut(s) 20, 188, 377, 537, 765, 1110, 1302
BsuTUI ATCGAT 1 cut(s) 399
BtrI CACGTC 1 cut(s) 127
BtsCI GGATG 4 cut(s) 937, 1015, 1351, 1666
BtsIMutI CAGTG 2 cut(s) 1647, 1731
BveI ACCTGC 1 cut(s) 698
Cac8I GCNNGC 8 cut(s) 62, 86, 153, 587, 763, 1041, 1411, 1617
CaiI CAGNNNCTG 2 cut(s) 725, 1265
CfoI GCGC 4 cut(s) 121, 157, 286, 472
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 6 cut(s) 375, 763, 908, 1108, 1109, 1210
ClaI ATCGAT 1 cut(s) 399
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 557, 1054, 1456
CviQI GTAC 3 cut(s) 557, 1054, 1456
DdeI CTNAG 4 cut(s) 371, 561, 1047, 1322
DpnI GATC 7 cut(s) 297, 594, 723, 782, 1059, 1748, 1785
DpnII GATC 7 cut(s) 295, 592, 721, 780, 1057, 1746, 1783
DraI TTTAAA 2 cut(s) 1465, 1651
EaeI YGGCCR 4 cut(s) 18, 186, 535, 1300
Eam1104I CTCTTC 1 cut(s) 1406
EarI CTCTTC 1 cut(s) 1406
Ecl136II GAGCTC 3 cut(s) 60, 175, 1399
Eco130I CCWWGG 1 cut(s) 649
Eco24I GRGCYC 4 cut(s) 62, 177, 1112, 1401
Eco47I GGWCC 2 cut(s) 908, 1210
Eco47III AGCGCT 1 cut(s) 471
Eco53kI GAGCTC 3 cut(s) 60, 175, 1399
Eco57I CTGAAG 1 cut(s) 288
Eco72I CACGTG 1 cut(s) 1115
Eco88I CYCGRG 2 cut(s) 1127, 1275
Eco91I GGTNACC 1 cut(s) 1705
EcoICRI GAGCTC 3 cut(s) 60, 175, 1399
EcoO109I RGGNCCY 1 cut(s) 1108
EcoO65I GGTNACC 1 cut(s) 1705
EcoRI GAATTC 2 cut(s) 487, 1713
EcoRII CCWGG 3 cut(s) 765, 1212, 1531
EcoT14I CCWWGG 1 cut(s) 649
EcoT22I ATGCAT 1 cut(s) 739
EcoT38I GRGCYC 4 cut(s) 62, 177, 1112, 1401
ErhI CCWWGG 1 cut(s) 649
Esp3I CGTCTC 1 cut(s) 1043
FalI AAGNNNNNCTT 6 cut(s) 1315, 1347, 1385, 1417, 1397, 1429
FauI CCCGC 1 cut(s) 754
FbaI TGATCA 1 cut(s) 780
FblI GTMKAC 1 cut(s) 92
FokI GGATG 4 cut(s) 944, 1022, 1338, 1673
FriOI GRGCYC 4 cut(s) 62, 177, 1112, 1401
FspBI CTAG 6 cut(s) 465, 650, 677, 690, 1541, 1788
FspI TGCGCA 1 cut(s) 285
GlaI GCGC 4 cut(s) 120, 156, 285, 471
GsuI CTGGAG 1 cut(s) 912
HaeII RGCGCY 2 cut(s) 158, 473
HaeIII GGCC 7 cut(s) 20, 188, 377, 537, 765, 1110, 1302
HapII CCGG 9 cut(s) 21, 52, 76, 122, 145, 152, 639, 864, 1633
HgaI GACGC 1 cut(s) 130
HhaI GCGC 4 cut(s) 121, 157, 286, 472
Hin6I GCGC 4 cut(s) 119, 155, 284, 470
HinP1I GCGC 4 cut(s) 119, 155, 284, 470
HincII GTYRAC 2 cut(s) 93, 277
HindII GTYRAC 2 cut(s) 93, 277
HinfI GANTC 3 cut(s) 423, 1149, 1733
HpaII CCGG 9 cut(s) 21, 52, 76, 122, 145, 152, 639, 864, 1633
HphI GGTGA 3 cut(s) 617, 851, 1717
Hpy166II GTNNAC 5 cut(s) 93, 277, 869, 1000, 1456
Hpy188I TCNGA 6 cut(s) 104, 564, 972, 1087, 1095, 1267
Hpy188III TCNNGA 9 cut(s) 133, 299, 361, 427, 620, 639, 690, 799, 886
Hpy8I GTNNAC 5 cut(s) 93, 277, 869, 1000, 1456
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 5 cut(s) 249, 846, 1088, 1201, 1300
HpyCH4III ACNGT 5 cut(s) 616, 956, 1261, 1507, 1627
HpyCH4IV ACGT 6 cut(s) 126, 279, 643, 1052, 1114, 1590
HpyF3I CTNAG 4 cut(s) 371, 561, 1047, 1322
HpySE526I ACGT 6 cut(s) 126, 279, 643, 1052, 1114, 1590
HspAI GCGC 4 cut(s) 119, 155, 284, 470
Kpn2I TCCGGA 1 cut(s) 638
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 780
Kzo9I GATC 7 cut(s) 295, 592, 721, 780, 1057, 1746, 1783
LguI GCTCTTC 1 cut(s) 1406
LmnI GCTCC 6 cut(s) 57, 81, 138, 172, 1292, 1396
Lsp1109I GCAGC 7 cut(s) 23, 60, 84, 160, 1048, 1345, 1562
LweI GCATC 6 cut(s) 295, 405, 439, 694, 724, 1651
MaeI CTAG 6 cut(s) 465, 650, 677, 690, 1541, 1788
MaeII ACGT 6 cut(s) 126, 279, 643, 1052, 1114, 1590
MaeIII GTNAC 6 cut(s) 511, 523, 883, 1195, 1255, 1705
MalI GATC 7 cut(s) 297, 594, 723, 782, 1059, 1748, 1785
MbiI CCGCTC 1 cut(s) 196
MboI GATC 7 cut(s) 295, 592, 721, 780, 1057, 1746, 1783
MboII GAAGA 7 cut(s) 38, 281, 376, 587, 1246, 1328, 1393
MfeI CAATTG 1 cut(s) 1494
MflI RGATCY 1 cut(s) 721
MhlI GDGCHC 4 cut(s) 62, 177, 1112, 1401
MlsI TGGCCA 1 cut(s) 1302
MluCI AATT 6 cut(s) 430, 487, 542, 551, 1494, 1713
MluNI TGGCCA 1 cut(s) 1302
MmeI TCCRAC 5 cut(s) 500, 637, 886, 930, 1710
Mox20I TGGCCA 1 cut(s) 1302
Mph1103I ATGCAT 1 cut(s) 739
MroI TCCGGA 1 cut(s) 638
MroNI GCCGGC 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 1428
MscI TGGCCA 1 cut(s) 1302
MseI TTAA 7 cut(s) 32, 546, 1464, 1514, 1587, 1599, 1650
MslI CAYNNNNRTG 3 cut(s) 603, 755, 1703
Msp20I TGGCCA 1 cut(s) 1302
MspCI CTTAAG 1 cut(s) 1513
MspI CCGG 9 cut(s) 21, 52, 76, 122, 145, 152, 639, 864, 1633
MspR9I CCNGG 3 cut(s) 767, 1214, 1533
MunI CAATTG 1 cut(s) 1494
MvaI CCWGG 3 cut(s) 767, 1214, 1533
MvnI CGCG 1 cut(s) 119
NaeI GCCGGC 1 cut(s) 153
NdeII GATC 7 cut(s) 295, 592, 721, 780, 1057, 1746, 1783
NgoMIV GCCGGC 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 1110
NmuCI GTSAC 5 cut(s) 523, 883, 1195, 1255, 1705
NsbI TGCGCA 1 cut(s) 285
NsiI ATGCAT 1 cut(s) 739
NspI RCATGY 2 cut(s) 232, 1413
OliI CACNNNNGTG 1 cut(s) 755
PaeI GCATGC 1 cut(s) 1413
PaeR7I CTCGAG 1 cut(s) 1127
PciSI GCTCTTC 1 cut(s) 1406
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PdiI GCCGGC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 1428
PfeI GAWTC 3 cut(s) 423, 1149, 1733
Pfl23II CGTACG 1 cut(s) 1053
PmaCI CACGTG 1 cut(s) 1115
PmlI CACGTG 1 cut(s) 1115
Ppu21I YACGTR 1 cut(s) 1115
PshAI GACNNNNGTC 1 cut(s) 98
Psp124BI GAGCTC 3 cut(s) 62, 177, 1401
Psp6I CCWGG 3 cut(s) 765, 1212, 1531
PspCI CACGTG 1 cut(s) 1115
PspEI GGTNACC 1 cut(s) 1705
PspGI CCWGG 3 cut(s) 765, 1212, 1531
PspLI CGTACG 1 cut(s) 1053
PspN4I GGNNCC 1 cut(s) 1110
PspOMI GGGCCC 1 cut(s) 1108
PspPI GGNCC 6 cut(s) 375, 763, 908, 1108, 1109, 1210
PspXI VCTCGAGB 1 cut(s) 1127
PsrI GAACNNNNNNTAC 2 cut(s) 1229, 1261
PstNI CAGNNNCTG 2 cut(s) 725, 1265
PsuI RGATCY 1 cut(s) 721
RsaI GTAC 3 cut(s) 558, 1055, 1457
RsaNI GTAC 3 cut(s) 557, 1054, 1456
RseI CAYNNNNRTG 3 cut(s) 603, 755, 1703
SacI GAGCTC 3 cut(s) 62, 177, 1401
SalI GTCGAC 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 1406
SaqAI TTAA 7 cut(s) 32, 546, 1464, 1514, 1587, 1599, 1650
Sau3AI GATC 7 cut(s) 295, 592, 721, 780, 1057, 1746, 1783
Sau96I GGNCC 6 cut(s) 375, 763, 908, 1108, 1109, 1210
ScrFI CCNGG 3 cut(s) 767, 1214, 1533
SduI GDGCHC 4 cut(s) 62, 177, 1112, 1401
SfaNI GCATC 6 cut(s) 295, 405, 439, 694, 724, 1651
Sfr274I CTCGAG 1 cut(s) 1127
SinI GGWCC 2 cut(s) 908, 1210
SlaI CTCGAG 1 cut(s) 1127
SmiMI CAYNNNNRTG 3 cut(s) 603, 755, 1703
SmlI CTYRAG 6 cut(s) 176, 329, 797, 1127, 1201, 1513
SmoI CTYRAG 6 cut(s) 176, 329, 797, 1127, 1201, 1513
SphI GCATGC 1 cut(s) 1413
Sse9I AATT 6 cut(s) 430, 487, 542, 551, 1494, 1713
SsiI CCGC 8 cut(s) 5, 8, 88, 185, 196, 534, 761, 1441
SspMI CTAG 6 cut(s) 465, 650, 677, 690, 1541, 1788
SstI GAGCTC 3 cut(s) 62, 177, 1401
StyD4I CCNGG 3 cut(s) 765, 1212, 1531
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 5 cut(s) 616, 956, 1261, 1507, 1627
TaiI ACGT 6 cut(s) 129, 282, 646, 1055, 1117, 1593
TaqI TCGA 5 cut(s) 44, 68, 92, 399, 1128
TasI AATT 6 cut(s) 430, 487, 542, 551, 1494, 1713
TatI WGTACW 1 cut(s) 1455
TauI GCSGC 4 cut(s) 8, 11, 188, 537
TfiI GAWTC 3 cut(s) 423, 1149, 1733
Tru1I TTAA 7 cut(s) 32, 546, 1464, 1514, 1587, 1599, 1650
Tru9I TTAA 7 cut(s) 32, 546, 1464, 1514, 1587, 1599, 1650
TscAI CASTG 2 cut(s) 1647, 1731
TseFI GTSAC 5 cut(s) 523, 883, 1195, 1255, 1705
TseI GCWGC 7 cut(s) 11, 48, 72, 148, 1036, 1358, 1550
Tsp45I GTSAC 5 cut(s) 523, 883, 1195, 1255, 1705
TspDTI ATGAA 8 cut(s) 366, 555, 587, 758, 916, 948, 1451, 1541
TspRI CASTG 2 cut(s) 1647, 1731
Vha464I CTTAAG 1 cut(s) 1513
VpaK11BI GGWCC 2 cut(s) 908, 1210
XapI RAATTY 5 cut(s) 430, 487, 542, 551, 1713
XbaI TCTAGA 1 cut(s) 689
XceI RCATGY 2 cut(s) 232, 1413
XhoI CTCGAG 1 cut(s) 1127
XmaJI CCTAGG 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 92
XmnI GAANNNNTTC 1 cut(s) 1428
XspI CTAG 6 cut(s) 465, 650, 677, 690, 1541, 1788
Zsp2I ATGCAT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.