Rmu_co8427767.1_g000001
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8427767.1
OG0000245
Physical Location & Seq
Forward (+)
246 .. 1467
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8427767.1_g000001.1.cds

Sequence Viewer

Length: 952 bp
atggttggtgatgcattacaaagaggtatttcgggtggccaaaagaaaaggctgacaacaggagagatgattgtcggtcccacaaaagcgctatttatggatgaaatatcaactggattagacagctctacgacttttcagatagtcacatatctgcagcagttggtgcacataacagatacaactgcattggtgtcacttctacaaccagcacctgagacattcgatttatttgatgatgtgatactaatggcagaggggaagatagtttaccatggtcctcggagtcatgcacttcagtttttcgaagattgtggttttaagtgccctccaagaaagggtgctgcagattatcttcaggaggtaatctcaaagaaggatcaagcacaatactggaagcatgataacattccctatgattatgtttctgtggacaaattctctcagcttttcagagcaagttacttgggaaagaagttaattgatgagctctcaaaaccatatgagaaatcaccgggccaggataaggctttatcatttagcatctactctgtcagaaaatgggaattgttcaaagcttgtatgggtagagagctgcttcttatgaaacgaaattcctttgtttatgtattcaaaacagcgcagcttgtcatcactgcacttttgacaacgacagtattcatacgtactcagatggatgtggatttgacaagtgcaaattattttatgggtgcattgttctatacacttgtgagacttatgaccaatggagttgcagaactgtccttgactatcactagactaccagtggttgataagcaaagagccttctatctttatccagcatggtcctattcaattccagcctctctcctgaagattccattttcactgagtgatgcggtgttgtggacagcaataacttactatggtgttgggtatagccctgaaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

317

Amino Acids

35.83

Weight (kDa)

8.23

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 902
AclWI GGATC 1 cut(s) 387
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 2 cut(s) 437, 613
AcuI CTGAAG 3 cut(s) 281, 341, 896
AdeI CACNNNGTG 1 cut(s) 896
AfaI GTAC 1 cut(s) 688
AfeI AGCGCT 1 cut(s) 90
AfiI CCNNNNNNNGG 2 cut(s) 338, 526
AgsI TTSAA 3 cut(s) 574, 634, 858
AjnI CCWGG 1 cut(s) 519
AluBI AGCT 6 cut(s) 126, 448, 490, 578, 595, 646
AluI AGCT 6 cut(s) 126, 448, 490, 578, 595, 646
Alw21I GWGCWC 2 cut(s) 171, 492
Alw26I GTCTC 2 cut(s) 212, 748
Alw44I GTGCAC 1 cut(s) 167
AlwI GGATC 1 cut(s) 387
AlwNI CAGNNNCTG 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 90
AoxI GGCC 2 cut(s) 37, 517
ApaLI GTGCAC 1 cut(s) 167
ApeKI GCWGC 4 cut(s) 157, 344, 595, 643
ApoI RAATTY 2 cut(s) 437, 613
AspLEI GCGC 2 cut(s) 91, 643
AspS9I GGNCC 4 cut(s) 77, 278, 517, 849
AsuC2I CCSGG 1 cut(s) 516
AsuHPI GGTGA 2 cut(s) 20, 504
AsuII TTCGAA 1 cut(s) 306
AvaII GGWCC 3 cut(s) 77, 278, 849
BaeGI GKGCMC 2 cut(s) 171, 329
BalI TGGCCA 1 cut(s) 39
BanII GRGCYC 1 cut(s) 492
BarI GAAGNNNNNNTAC 2 cut(s) 254, 286
Bbv12I GWGCWC 2 cut(s) 171, 492
BbvI GCAGC 4 cut(s) 169, 331, 582, 655
BccI CCATC 1 cut(s) 688
BciT130I CCWGG 1 cut(s) 521
BcnI CCSGG 1 cut(s) 516
BcoDI GTCTC 2 cut(s) 212, 748
BfaI CTAG 1 cut(s) 798
BfmI CTRYAG 2 cut(s) 155, 345
BfoI RGCGCY 1 cut(s) 92
BisI GCNGC 4 cut(s) 158, 345, 596, 644
BlsI GCNGC 4 cut(s) 159, 346, 597, 645
Bme1390I CCNGG 2 cut(s) 516, 521
Bme18I GGWCC 3 cut(s) 77, 278, 849
BmgT120I GGNCC 4 cut(s) 77, 278, 517, 849
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 2 cut(s) 516, 521
BmsI GCATC 2 cut(s) 552, 889
BplI GAGNNNNNCTC 2 cut(s) 353, 385
Bpu14I TTCGAA 1 cut(s) 306
BpuMI CCSGG 1 cut(s) 516
BsaAI YACGTR 1 cut(s) 686
BsaJI CCNNGG 2 cut(s) 274, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 338, 526
Bse1I ACTGG 3 cut(s) 118, 398, 806
BseBI CCWGG 1 cut(s) 521
BseDI CCNNGG 2 cut(s) 274, 281
BseGI GGATG 2 cut(s) 106, 703
BseLI CCNNNNNNNGG 2 cut(s) 338, 526
BseMII CTCAG 4 cut(s) 207, 458, 704, 884
BseNI ACTGG 3 cut(s) 118, 398, 806
BseSI GKGCMC 2 cut(s) 171, 329
BseXI GCAGC 4 cut(s) 169, 331, 582, 655
BsgI GTGCAG 1 cut(s) 642
BshFI GGCC 2 cut(s) 39, 519
BsiHKAI GWGCWC 2 cut(s) 171, 492
BsiSI CCGG 1 cut(s) 515
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 338, 526
BsmAI GTCTC 2 cut(s) 212, 748
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 2 cut(s) 39, 519
Bsp119I TTCGAA 1 cut(s) 306
Bsp1286I GDGCHC 3 cut(s) 171, 329, 492
Bsp143I GATC 1 cut(s) 379
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 1 cut(s) 902
BspANI GGCC 2 cut(s) 39, 519
BspCNI CTCAG 4 cut(s) 208, 457, 703, 885
BspLI GGNNCC 1 cut(s) 79
BspMAI CTGCAG 2 cut(s) 159, 349
BspPI GGATC 1 cut(s) 387
BspT104I TTCGAA 1 cut(s) 306
BsrI ACTGG 3 cut(s) 118, 398, 806
BssECI CCNNGG 2 cut(s) 274, 281
BssMI GATC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 521
Bst4CI ACNGT 2 cut(s) 676, 783
BstAPI GCANNNNNTGC 1 cut(s) 166
BstBAI YACGTR 1 cut(s) 686
BstBI TTCGAA 1 cut(s) 306
BstDEI CTNAG 4 cut(s) 216, 444, 690, 893
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 2 cut(s) 106, 703
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 2 cut(s) 91, 643
BstKTI GATC 1 cut(s) 382
BstMAI GTCTC 2 cut(s) 212, 748
BstMBI GATC 1 cut(s) 379
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 514, 519
BstSFI CTRYAG 2 cut(s) 155, 345
BstSLI GKGCMC 2 cut(s) 171, 329
BstSNI TACGTA 1 cut(s) 686
BstV1I GCAGC 4 cut(s) 169, 331, 582, 655
BsuRI GGCC 2 cut(s) 39, 519
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 2 cut(s) 106, 703
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 3 cut(s) 654, 813, 890
CaiI CAGNNNCTG 1 cut(s) 215
CfoI GCGC 2 cut(s) 91, 643
Cfr13I GGNCC 4 cut(s) 77, 278, 517, 849
Csp6I GTAC 1 cut(s) 687
CviAII CATG 4 cut(s) 275, 290, 401, 846
CviQI GTAC 1 cut(s) 687
DdeI CTNAG 4 cut(s) 216, 444, 690, 893
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
DraIII CACNNNGTG 1 cut(s) 896
EaeI YGGCCR 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 490
Eco105I TACGTA 1 cut(s) 686
Eco130I CCWWGG 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 492
Eco47I GGWCC 3 cut(s) 77, 278, 849
Eco47III AGCGCT 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 3 cut(s) 281, 341, 896
EcoICRI GAGCTC 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 519
EcoT14I CCWWGG 1 cut(s) 274
EcoT22I ATGCAT 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 4 cut(s) 278, 293, 404, 849
FaqI GGGAC 1 cut(s) 63
FatI CATG 4 cut(s) 274, 289, 400, 845
FauNDI CATATG 1 cut(s) 502
Fnu4HI GCNGC 4 cut(s) 158, 345, 596, 644
FokI GGATG 2 cut(s) 113, 710
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 4 cut(s) 158, 345, 596, 644
FspBI CTAG 1 cut(s) 798
GlaI GCGC 2 cut(s) 90, 642
GluI GCNGC 4 cut(s) 158, 345, 596, 644
HaeII RGCGCY 1 cut(s) 92
HaeIII GGCC 2 cut(s) 39, 519
HapII CCGG 1 cut(s) 515
HhaI GCGC 2 cut(s) 91, 643
Hin1II CATG 4 cut(s) 278, 293, 404, 849
Hin6I GCGC 2 cut(s) 89, 641
HinP1I GCGC 2 cut(s) 89, 641
HindIII AAGCTT 1 cut(s) 576
HinfI GANTC 2 cut(s) 286, 880
HpaII CCGG 1 cut(s) 515
HphI GGTGA 2 cut(s) 20, 504
Hpy166II GTNNAC 4 cut(s) 169, 271, 433, 912
Hpy188I TCNGA 5 cut(s) 141, 285, 455, 557, 693
Hpy188III TCNNGA 2 cut(s) 359, 874
Hpy8I GTNNAC 4 cut(s) 169, 271, 433, 912
HpyAV CCTTC 2 cut(s) 370, 838
HpyCH4III ACNGT 2 cut(s) 676, 783
HpyCH4IV ACGT 1 cut(s) 685
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 4 cut(s) 216, 444, 690, 893
HpySE526I ACGT 1 cut(s) 685
Hsp92II CATG 4 cut(s) 278, 293, 404, 849
HspAI GCGC 2 cut(s) 89, 641
Kzo9I GATC 1 cut(s) 379
Lsp1109I GCAGC 4 cut(s) 169, 331, 582, 655
LweI GCATC 2 cut(s) 552, 889
MaeI CTAG 1 cut(s) 798
MaeII ACGT 1 cut(s) 685
MaeIII GTNAC 3 cut(s) 145, 195, 461
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 4 cut(s) 274, 320, 347, 889
MhlI GDGCHC 3 cut(s) 171, 329, 492
MlsI TGGCCA 1 cut(s) 39
MluCI AATT 6 cut(s) 437, 480, 566, 613, 718, 858
MluNI TGGCCA 1 cut(s) 39
MlyI GAGTC 1 cut(s) 295
MnlI CCTC 6 cut(s) 17, 250, 291, 339, 355, 877
Mox20I TGGCCA 1 cut(s) 39
Mph1103I ATGCAT 1 cut(s) 16
MscI TGGCCA 1 cut(s) 39
MseI TTAA 2 cut(s) 321, 479
Msp20I TGGCCA 1 cut(s) 39
MspI CCGG 1 cut(s) 515
MspR9I CCNGG 2 cut(s) 516, 521
MvaI CCWGG 1 cut(s) 521
MwoI GCNNNNNNNGC 1 cut(s) 166
NciI CCSGG 1 cut(s) 516
NcoI CCATGG 1 cut(s) 274
NdeI CATATG 1 cut(s) 502
NdeII GATC 1 cut(s) 379
NlaIII CATG 4 cut(s) 278, 293, 404, 849
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 2 cut(s) 145, 195
NsiI ATGCAT 1 cut(s) 16
NspV TTCGAA 1 cut(s) 306
PfeI GAWTC 1 cut(s) 880
PkrI GCNGC 4 cut(s) 159, 346, 597, 645
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
Ppu21I YACGTR 1 cut(s) 686
Psp124BI GAGCTC 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 519
PspGI CCWGG 1 cut(s) 519
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 4 cut(s) 77, 278, 517, 849
PstI CTGCAG 2 cut(s) 159, 349
PstNI CAGNNNCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 688
RsaNI GTAC 1 cut(s) 687
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 2 cut(s) 321, 479
SatI GCNGC 4 cut(s) 158, 345, 596, 644
Sau3AI GATC 1 cut(s) 379
Sau96I GGNCC 4 cut(s) 77, 278, 517, 849
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 2 cut(s) 516, 521
SduI GDGCHC 3 cut(s) 171, 329, 492
SfaNI GCATC 2 cut(s) 552, 889
SfcI CTRYAG 2 cut(s) 155, 345
SfuI TTCGAA 1 cut(s) 306
SinI GGWCC 3 cut(s) 77, 278, 849
SnaBI TACGTA 1 cut(s) 686
Sse9I AATT 6 cut(s) 437, 480, 566, 613, 718, 858
SsiI CCGC 1 cut(s) 902
SspMI CTAG 1 cut(s) 798
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 2 cut(s) 514, 519
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 2 cut(s) 676, 783
TaiI ACGT 1 cut(s) 688
TaqI TCGA 2 cut(s) 225, 306
TaqII GACCGA 1 cut(s) 65
TasI AATT 6 cut(s) 437, 480, 566, 613, 718, 858
TfiI GAWTC 1 cut(s) 880
Tru1I TTAA 2 cut(s) 321, 479
Tru9I TTAA 2 cut(s) 321, 479
TscAI CASTG 3 cut(s) 661, 813, 897
TseFI GTSAC 2 cut(s) 145, 195
TseI GCWGC 4 cut(s) 157, 344, 595, 643
Tsp45I GTSAC 2 cut(s) 145, 195
TspDTI ATGAA 3 cut(s) 117, 620, 670
TspRI CASTG 3 cut(s) 661, 813, 897
VneI GTGCAC 1 cut(s) 167
VpaK11BI GGWCC 3 cut(s) 77, 278, 849
XapI RAATTY 2 cut(s) 437, 613
XspI CTAG 1 cut(s) 798
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.