Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010632.1

Orthogroup ID

OG0000245

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1072

Gene Structure 1072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010632.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 700 bp

agagaaacaacaagatattattaaccttctgggagcaacatattctgctgttcttttccttggagcgggaaatgcttctgctgtgcaatctgtggtttcgattgagagaacagttttctaccgagaaagagcagcaggaatgtattcagagttgccttatgcatttgctcaggtggccattgagacgatttatgttgctatacaaacattcatttattcccttcttctatttaccatgatcggctatgaatttaaagttgagaaatttttgtatttctactactttatattcatgtgttttacatacatgtcaatgtatggaatgatggtggttgccctaactcccggccatcaaattgctgcaattgtcatgtccttcttcatgagtttctggaatttgttctccggtttcctcctcgctagaccgctactcccgatatggtggaggtggtactactggggttctccaattgcttggacaatttacggtgtccaatcatctcaattcggtgaccggacggataagtttgtcgaactttctgatggaagctcagaaagattagatctattcctcaagaagaattggggttatgaccacgacttcctcataccagttgtcgttgctcatgttggttgggtcctcctcttcttctttgtctttgcttatggtatcaagtaccttaacttccagaggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

232

Amino Acids

27.13

Weight (kDa)

7.09

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66950 AT2G36380
fragaria_vesca	FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica	MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica	Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis	pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis	RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata	RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora	Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa	Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha	Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana	Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	66
AciI	CCGC	2 cut(s)	66, 426
AcoI	YGGCCR	2 cut(s)	175, 347
AcsI	RAATTY	3 cut(s)	249, 264, 395
AfaI	GTAC	2 cut(s)	453, 678
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	307
AluBI	AGCT	1 cut(s)	550
AluI	AGCT	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	177
AoxI	GGCC	2 cut(s)	175, 347
ApeKI	GCWGC	2 cut(s)	132, 360
ApoI	RAATTY	3 cut(s)	249, 264, 395
Asp700I	GAANNNNTTC	3 cut(s)	74, 143, 399
AspS9I	GGNCC	1 cut(s)	638
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	522
AvaII	GGWCC	1 cut(s)	638
BalI	TGGCCA	1 cut(s)	177
BarI	GAAGNNNNNNTAC	1 cut(s)	669
BbvI	GCAGC	2 cut(s)	144, 347
BccI	CCATC	3 cut(s)	320, 358, 537
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	1 cut(s)	421
BglII	AGATCT	1 cut(s)	563
BisI	GCNGC	2 cut(s)	133, 361
BlsI	GCNGC	2 cut(s)	134, 362
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	1 cut(s)	638
BmgT120I	GGNCC	1 cut(s)	638
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	1 cut(s)	346
BmrI	ACTGGG	1 cut(s)	467
BmuI	ACTGGG	1 cut(s)	467
Bpu10I	CCTNAGC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	558
BpuMI	CCSGG	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	59
BsaWI	WCCGGW	2 cut(s)	405, 514
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	462, 612
BseDI	CCNNGG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	2 cut(s)	183, 565
BseNI	ACTGG	2 cut(s)	462, 612
BseRI	GAGGAG	2 cut(s)	405, 633
BseXI	GCAGC	2 cut(s)	144, 347
BshFI	GGCC	2 cut(s)	177, 349
BsiSI	CCGG	3 cut(s)	346, 406, 515
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	177
BsmBI	CGTCTC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	177, 349
Bsp143I	GATC	2 cut(s)	238, 563
BspACI	CCGC	2 cut(s)	66, 426
BspANI	GGCC	2 cut(s)	177, 349
BspCNI	CTCAG	2 cut(s)	182, 564
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	1 cut(s)	639
BsrBI	CCGCTC	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	462, 612
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	2 cut(s)	238, 563
BssT1I	CCWWGG	1 cut(s)	59
Bst4CI	ACNGT	2 cut(s)	113, 489
Bst6I	CTCTTC	1 cut(s)	651
BstDEI	CTNAG	2 cut(s)	169, 551
BstEII	GGTNACC	1 cut(s)	510
BstKTI	GATC	2 cut(s)	241, 566
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	2 cut(s)	238, 563
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 174
BstNSI	RCATGY	1 cut(s)	311
BstPI	GGTNACC	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	344
BstV1I	GCAGC	2 cut(s)	144, 347
BstX2I	RGATCY	1 cut(s)	563
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	177, 349
CciI	TCATGA	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	638
Csp6I	GTAC	2 cut(s)	452, 677
CviAII	CATG	6 cut(s)	236, 293, 308, 371, 383, 627
CviJI	RGCY	4 cut(s)	177, 244, 349, 550
CviKI_1	RGCY	4 cut(s)	177, 244, 349, 550
CviQI	GTAC	2 cut(s)	452, 677
DdeI	CTNAG	2 cut(s)	169, 551
DpnI	GATC	2 cut(s)	240, 565
DpnII	GATC	2 cut(s)	238, 563
DraI	TTTAAA	1 cut(s)	254
EaeI	YGGCCR	2 cut(s)	175, 347
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
Eco130I	CCWWGG	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	638
Eco91I	GGTNACC	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	638
EcoO65I	GGTNACC	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	59
EcoT22I	ATGCAT	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	59
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	6 cut(s)	239, 296, 311, 374, 386, 630
FatI	CATG	6 cut(s)	235, 292, 307, 370, 382, 626
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	133, 361
Fsp4HI	GCNGC	2 cut(s)	133, 361
FspBI	CTAG	1 cut(s)	421
GluI	GCNGC	2 cut(s)	133, 361
HaeIII	GGCC	2 cut(s)	177, 349
HapII	CCGG	3 cut(s)	346, 406, 515
Hin1II	CATG	6 cut(s)	239, 296, 311, 374, 386, 630
HpaII	CCGG	3 cut(s)	346, 406, 515
HphI	GGTGA	1 cut(s)	522
Hpy188I	TCNGA	3 cut(s)	149, 542, 554
Hpy188III	TCNNGA	5 cut(s)	383, 392, 434, 575, 689
HpyAV	CCTTC	3 cut(s)	36, 231, 386
HpyCH4III	ACNGT	2 cut(s)	113, 489
HpyCH4V	TGCA	3 cut(s)	86, 162, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 174
HpyF3I	CTNAG	2 cut(s)	169, 551
Hsp92II	CATG	6 cut(s)	239, 296, 311, 374, 386, 630
Kzo9I	GATC	2 cut(s)	238, 563
LmnI	GCTCC	2 cut(s)	33, 63
LpnPI	CCDG	9 cut(s)	15, 121, 156, 359, 377, 419, 443, 528, 625
Lsp1109I	GCAGC	2 cut(s)	144, 347
MaeI	CTAG	1 cut(s)	421
MaeIII	GTNAC	1 cut(s)	510
MalI	GATC	2 cut(s)	240, 565
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	2 cut(s)	238, 563
MboII	GAAGA	5 cut(s)	216, 371, 590, 638, 641
MfeI	CAATTG	2 cut(s)	364, 469
MflI	RGATCY	1 cut(s)	563
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	9 cut(s)	249, 264, 355, 364, 395, 469, 481, 504, 581
MluNI	TGGCCA	1 cut(s)	177
MnlI	CCTC	8 cut(s)	423, 426, 439, 582, 615, 651, 654, 685
Mox20I	TGGCCA	1 cut(s)	177
Mph1103I	ATGCAT	1 cut(s)	164
MroXI	GAANNNNTTC	3 cut(s)	74, 143, 399
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	3 cut(s)	22, 253, 682
MslI	CAYNNNNRTG	1 cut(s)	312
Msp20I	TGGCCA	1 cut(s)	177
MspI	CCGG	3 cut(s)	346, 406, 515
MspR9I	CCNGG	1 cut(s)	346
MunI	CAATTG	2 cut(s)	364, 469
MwoI	GCNNNNNNNGC	2 cut(s)	72, 174
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	2 cut(s)	238, 563
NlaIII	CATG	6 cut(s)	239, 296, 311, 374, 386, 630
NlaIV	GGNNCC	1 cut(s)	639
NmuCI	GTSAC	1 cut(s)	510
NsiI	ATGCAT	1 cut(s)	164
NspI	RCATGY	1 cut(s)	311
PagI	TCATGA	1 cut(s)	382
PciI	ACATGT	1 cut(s)	307
PdmI	GAANNNNTTC	3 cut(s)	74, 143, 399
PkrI	GCNGC	2 cut(s)	134, 362
PpuMI	RGGWCCY	1 cut(s)	638
PscI	ACATGT	1 cut(s)	307
Psp5II	RGGWCCY	1 cut(s)	638
PspEI	GGTNACC	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	1 cut(s)	638
PspPPI	RGGWCCY	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	563
RsaI	GTAC	2 cut(s)	453, 678
RsaNI	GTAC	2 cut(s)	452, 677
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	22, 253, 682
SatI	GCNGC	2 cut(s)	133, 361
Sau3AI	GATC	2 cut(s)	238, 563
Sau96I	GGNCC	1 cut(s)	638
ScrFI	CCNGG	1 cut(s)	346
SetI	ASST	5 cut(s)	28, 175, 450, 552, 682
SinI	GGWCC	1 cut(s)	638
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
Sse9I	AATT	9 cut(s)	249, 264, 355, 364, 395, 469, 481, 504, 581
SsiI	CCGC	2 cut(s)	66, 426
SspMI	CTAG	1 cut(s)	421
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	113, 489
TaqI	TCGA	2 cut(s)	99, 532
TasI	AATT	9 cut(s)	249, 264, 355, 364, 395, 469, 481, 504, 581
Tru1I	TTAA	3 cut(s)	22, 253, 682
Tru9I	TTAA	3 cut(s)	22, 253, 682
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	2 cut(s)	132, 360
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	4 cut(s)	200, 262, 281, 371
TspGWI	ACGGA	1 cut(s)	534
VpaK11BI	GGWCC	1 cut(s)	638
XapI	RAATTY	3 cut(s)	249, 264, 395
XceI	RCATGY	1 cut(s)	311
XmnI	GAANNNNTTC	3 cut(s)	74, 143, 399
XspI	CTAG	1 cut(s)	421
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.