Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000245

Physical Location & Seq

Genomic Coordinates Forward (+)

3336760 .. 3337260

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG043000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATGGTTATGGGAGCTCTTTATTCTGCTTGCTTGTTTCTTGGGGTCAATAATGCTTCTTCAGTTCAGCCAATTGTTTCGATTGAGAGGACAGTATTTTATCGAGAGAAAGCAGCTGGAATGTATTCTCCTTTCGCTTATGCAGCGGCCCAGGTAAGTCCCTTTACAGTACTGAGTATTAAGATTAATTATCAAATTGTATTTCTGGAAAGCAGCGGCCCAGGTAAGTCCCTTTACATATATATATCTTCTCTGCCTTCTACTGCCATGCAGGGCTTTATAGAGATCCCATACATTGCTGTACAGACAATAGTATATGGATTTTCATGTATTATGCTCTCTCTCTCTCTCTCTATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATTTTTTTTATATCACAAGGCTTACAGCCTTATGCCTTACGCCTCGAAACTTACGCCTTTGCAAGGCTATCCCGAAAACGCCTCAGGTTGCGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

166

Amino Acids

18.26

Weight (kDa)

8.82

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	3 - 60	3.1e-10	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66950 AT2G36380
fragaria_vesca	FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica	MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica	Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis	pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis	RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata	RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora	Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa	Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha	Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana	Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	146, 216
AclWI	GGATC	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	2 cut(s)	171, 303
AfiI	CCNNNNNNNGG	1 cut(s)	466
AjnI	CCWGG	2 cut(s)	150, 220
AluBI	AGCT	2 cut(s)	17, 116
AluI	AGCT	2 cut(s)	17, 116
Alw21I	GWGCWC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	280
AoxI	GGCC	2 cut(s)	147, 217
ApeKI	GCWGC	3 cut(s)	113, 143, 213
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	2 cut(s)	148, 218
AxyI	CCTNAGG	1 cut(s)	486
BanII	GRGCYC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	3 cut(s)	125, 155, 225
BciT130I	CCWGG	2 cut(s)	152, 222
BisI	GCNGC	5 cut(s)	114, 144, 147, 214, 217
BlsI	GCNGC	5 cut(s)	115, 145, 148, 215, 218
BmcAI	AGTACT	1 cut(s)	171
Bme1390I	CCNGG	2 cut(s)	152, 222
BmgT120I	GGNCC	2 cut(s)	148, 218
BmrFI	CCNGG	2 cut(s)	152, 222
BsaJI	CCNNGG	2 cut(s)	150, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse21I	CCTNAGG	1 cut(s)	486
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	152, 222
BseDI	CCNNGG	2 cut(s)	150, 220
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	164, 500
BseXI	GCAGC	3 cut(s)	125, 155, 225
BshFI	GGCC	2 cut(s)	149, 219
BsiHKAI	GWGCWC	1 cut(s)	19
BslFI	GGGAC	2 cut(s)	144, 214
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmFI	GGGAC	2 cut(s)	144, 214
BsnI	GGCC	2 cut(s)	149, 219
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp1407I	TGTACA	1 cut(s)	301
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	2 cut(s)	146, 216
BspANI	GGCC	2 cut(s)	149, 219
BspCNI	CTCAG	2 cut(s)	165, 499
BspPI	GGATC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	294
BsrGI	TGTACA	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	150, 220
BssMI	GATC	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	152, 222
Bst4CI	ACNGT	2 cut(s)	94, 169
BstAUI	TGTACA	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	3 cut(s)	173, 486, 498
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	2 cut(s)	152, 222
BstSCI	CCNGG	2 cut(s)	150, 220
BstV1I	GCAGC	3 cut(s)	125, 155, 225
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
Bsu36I	CCTNAGG	1 cut(s)	486
BsuRI	GGCC	2 cut(s)	149, 219
Cac8I	GCNNGC	1 cut(s)	31
CfoI	GCGC	1 cut(s)	496
Cfr13I	GGNCC	2 cut(s)	148, 218
Csp6I	GTAC	2 cut(s)	170, 302
CviAII	CATG	2 cut(s)	268, 327
CviJI	RGCY	9 cut(s)	17, 70, 116, 149, 219, 276, 424, 431, 470
CviKI_1	RGCY	9 cut(s)	17, 70, 116, 149, 219, 276, 424, 431, 470
CviQI	GTAC	2 cut(s)	170, 302
DdeI	CTNAG	3 cut(s)	173, 486, 498
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	45
Eco81I	CCTNAGG	1 cut(s)	486
EcoICRI	GAGCTC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	150, 220
EcoT38I	GRGCYC	1 cut(s)	19
FaeI	CATG	2 cut(s)	271, 330
FaqI	GGGAC	2 cut(s)	144, 214
FatI	CATG	2 cut(s)	267, 326
Fnu4HI	GCNGC	5 cut(s)	114, 144, 147, 214, 217
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	5 cut(s)	114, 144, 147, 214, 217
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	5 cut(s)	114, 144, 147, 214, 217
HaeIII	GGCC	2 cut(s)	149, 219
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	2 cut(s)	271, 330
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
Hpy188III	TCNNGA	3 cut(s)	104, 206, 475
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	2 cut(s)	94, 169
HpyCH4V	TGCA	3 cut(s)	143, 271, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	3 cut(s)	173, 486, 498
Hsp92II	CATG	2 cut(s)	271, 330
HspAI	GCGC	1 cut(s)	494
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	8 cut(s)	102, 137, 164, 191, 207, 234, 257, 473
Lsp1109I	GCAGC	3 cut(s)	125, 155, 225
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	2 cut(s)	51, 240
MfeI	CAATTG	1 cut(s)	72
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	4 cut(s)	72, 187, 195, 403
MnlI	CCTC	3 cut(s)	81, 456, 495
MroXI	GAANNNNTTC	1 cut(s)	124
MseI	TTAA	2 cut(s)	180, 186
MspA1I	CMGCKG	3 cut(s)	116, 146, 216
MspR9I	CCNGG	2 cut(s)	152, 222
MunI	CAATTG	1 cut(s)	72
MvaI	CCWGG	2 cut(s)	152, 222
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	2 cut(s)	271, 330
PdmI	GAANNNNTTC	1 cut(s)	124
PkrI	GCNGC	5 cut(s)	115, 145, 148, 215, 218
PshBI	ATTAAT	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	2 cut(s)	150, 220
PspGI	CCWGG	2 cut(s)	150, 220
PspPI	GGNCC	2 cut(s)	148, 218
PsuI	RGATCY	1 cut(s)	285
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	171, 303
RsaNI	GTAC	2 cut(s)	170, 302
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	180, 186
SatI	GCNGC	5 cut(s)	114, 144, 147, 214, 217
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	2 cut(s)	148, 218
ScaI	AGTACT	1 cut(s)	171
ScrFI	CCNGG	2 cut(s)	152, 222
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	5 cut(s)	19, 118, 156, 226, 492
Sse9I	AATT	4 cut(s)	72, 187, 195, 403
SsiI	CCGC	2 cut(s)	146, 216
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	2 cut(s)	150, 220
TaaI	ACNGT	2 cut(s)	94, 169
TaqI	TCGA	3 cut(s)	80, 103, 448
TasI	AATT	4 cut(s)	72, 187, 195, 403
TatI	WGTACW	2 cut(s)	169, 301
TauI	GCSGC	2 cut(s)	149, 219
Tru1I	TTAA	2 cut(s)	180, 186
Tru9I	TTAA	2 cut(s)	180, 186
TseI	GCWGC	3 cut(s)	113, 143, 213
TspDTI	ATGAA	1 cut(s)	315
VspI	ATTAAT	1 cut(s)	186
XagI	CCTNNNNNAGG	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	124
ZrmI	AGTACT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.